| #!/bin/bash | |
| ## How to install ascp, in a gist. | |
| ## The URI below is not persistent! | |
| ## Check for latest link: https://www.ibm.com/aspera/connect/ | |
| wget -qO- https://ak-delivery04-mul.dhe.ibm.com/sar/CMA/OSA/0a07f/0/ibm-aspera-connect_4.1.0.46-linux_x86_64.tar.gz | tar xvz | |
| ## run it | |
| chmod +x ibm-aspera-connect_4.1.0.46-linux_x86_64.sh |
SAM and BAM filtering one-liners
@author: David Fredman, david.fredmanAAAAAA@gmail.com (sans poly-A tail)
@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/
Please extend with additional/faster/better solutions via a pull request!
BWA mapping (using piping for minimal disk I/O)