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Splits a fixedStep .wig file at its headers
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#!/bin/bash | |
## BASED ON : https://www.baeldung.com/linux/split-file-at-line-numbers | |
INPUT_FILE="out/experimental_reads.wig" # The input file | |
LINE_NUMBERS=( $(cat $INPUT_FILE | grep -n "g" | cut -f 1 -d":" | tr '\n' ' ') ) # The given line numbers (array) | |
START=1 # The offset to calculate lines | |
IDX=1 # The index used in the name of generated files: file1, file2 ... | |
for i in "${LINE_NUMBERS[@]}" | |
do | |
# Extract the lines using the head and tail commands | |
tail -n +$START "$INPUT_FILE" | head -n $(( i-START+1 )) > "file$IDX.txt" | |
(( IDX++ )) | |
START=$(( i )) | |
done | |
# Extract the last given line - last line in the file | |
tail -n +$START "$INPUT_FILE" > "file$IDX.txt" |
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