run_script_e3sm.csh

#!/bin/csh
set echo verbose

set run_time = 00:15:00
set project  = 
set ntasks   = 1
set nthrds   = 1

## ====================================================================
#   Set CASE related variables
## ====================================================================
setenv CASE      test_def_cascade_09212018_1task
setenv MACH      cascade
setenv COMPILER  intel
setenv COMPSET   FC5AV1C-L
setenv RES       ne30_ne30
setenv MAKE_J    24
setenv mods      'none' #$locdir/mods_$CASE #'none' for no mods directory

## ====================================================================
#   Define directories
## ====================================================================
setenv PTMP      /dtemp/st49401/$LOGNAME/csmruns
setenv SRCROOT   /dtemp/st49401/sing201/users/blaz/E3SM
setenv CASEROOT  ~$LOGNAME/CSM/CMIP5/$CASE
setenv RUNDIR    {$PTMP}/$CASE/run
setenv BLDDIR    {$PTMP}/$CASE/bld

## ====================================================================
#   create new case
## ====================================================================
rm -rf $CASEROOT
cd  $SRCROOT/cime/scripts
echo '==== GIT STATUS OF THE SRC ===='
git st
git rev-parse HEAD
echo '==== GIT STATUS ENDS ===='
./create_newcase -case $CASEROOT -mach $MACH -res $RES -compset $COMPSET -compiler $COMPILER -project $project || echo 'create_newcase failed' && exit -1

## ====================================================================
#   Modify xml file through xmlchange commands
## ====================================================================

#batch options:
cd  $CASEROOT
if ( $?queue) then
    ./xmlchange --force -file env_batch.xml -id JOB_QUEUE           -val $queue     || exit -1
endif
if ( $?run_time ) then
    ./xmlchange -file env_batch.xml -id JOB_WALLCLOCK_TIME  -val $run_time  || exit -1
endif
if ( $?project ) then
    ./xmlchange -file env_batch.xml -id PROJECT_REQUIRED    -val TRUE       || exit -1
    ./xmlchange -file env_batch.xml -id PROJECT             -val $project   || exit -1
endif

#tasks and threads:
cd $CASEROOT
if ( $ntasks > 0 ) then
    foreach icomp ('NTASKS_ATM' 'NTASKS_LND' 'NTASKS_ICE' 'NTASKS_OCN' 'NTASKS_CPL' 'NTASKS_GLC' 'NTASKS_ROF' 'NTASKS_WAV' 'NTASKS_ESP')
        ./xmlchange -file env_mach_pes.xml -id $icomp  -val $ntasks || echo 'Error setting tasks for component:' $icomp && exit -1
    end
endif

if ( $nthrds > 0 ) then
    foreach icomp ('NTHRDS_ATM' 'NTHRDS_LND' 'NTHRDS_ICE' 'NTHRDS_OCN' 'NTHRDS_CPL' 'NTHRDS_GLC' 'NTHRDS_ROF' 'NTHRDS_WAV' 'NTHRDS_ESP')
        ./xmlchange -file env_mach_pes.xml -id $icomp  -val $nthrds || echo 'Error setting thrds for component:' $icomp && exit -1
    end
endif


#build-time options:
cd $CASEROOT
./xmlchange -file env_build.xml -id EXEROOT -val $BLDDIR || exit -1
#./xmlchange -file env_build.xml -id DEBUG   -val 'TRUE'  || exit -1

#run-time options:
cd $CASEROOT
./xmlchange -file env_run.xml -id  GMAKE_J        -val $MAKE_J || exit -1
./xmlchange -file env_run.xml -id  RESUBMIT       -val '0'      || exit -1
./xmlchange -file env_run.xml -id  STOP_N         -val '1'      || exit -1
./xmlchange -file env_run.xml -id  STOP_OPTION    -val 'nsteps' || exit -1
./xmlchange -file env_run.xml -id  REST_N         -val '1'      || exit -1
./xmlchange -file env_run.xml -id  REST_OPTION    -val 'nmonths'|| exit -1
./xmlchange -file env_run.xml -id  RUNDIR         -val $RUNDIR  || exit -1


cat <<EOF >! user_nl_cam
&camexp

/
EOF

cat <<EOF >! user_nl_clm
&clmexp

/
EOF

#------------------------
## configure/Build/Submit
#------------------------
#config:
cd $CASEROOT
./case.setup || echo 'case setup FAILED ' && exit -1


#build:
cd $CASEROOT
if ( $mods != 'none' ) then
    ln -sf ${mods}/* SourceMods/src.cam || echo 'Error while linking mods directory' && exit -1
endif

./case.build || echo 'case build FAILED' && exit -1

./case.submit || echo 'case submit FAILED' && exit -1