Troubleshooting output for Cygwin bundle install problems

gistfile1.txt

> bundle install --verbose
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Fetching gem metadata from https://rubygems.org/
Query List: ["rails", "sqlite3", "sass-rails", "coffee-rails", "uglifier", "jquery-rails"]
Query Gemcutter Dependency Endpoint API: rails sqlite3 sass-rails coffee-rails uglifier jquery-rails
Fetching from: https://rubygems.org/api/v1/dependencies?gems=rails,sqlite3,sass-rails,coffee-rails,uglifier,jquery-rails
HTTP Success
Query List: ["coffee-script", "railties", "actionpack", "sprockets", "thor", "bundler", "actionmailer", "activeresource", "activerecord", "activesupport", "rake", "actionwebservice", "sass", "tilt", "ffi", "therubyracer", "execjs", "multi_json", "json"]
Query Gemcutter Dependency Endpoint API: coffee-script railties actionpack sprockets thor bundler actionmailer activeresource activerecord activesupport rake actionwebservice sass tilt ffi therubyracer execjs multi_json json
Fetching from: https://rubygems.org/api/v1/dependencies?gems=coffee-script,railties,actionpack,sprockets,thor,bundler,actionmailer,activeresource,activerecord,activesupport,rake,actionwebservice,sass,tilt,ffi,therubyracer,execjs,multi_json,json
HTTP Success
Query List: ["mail", "text-format", "erubis", "journey", "rack-test", "rack", "builder", "rack-cache", "activemodel", "i18n", "rack-mount", "tzinfo", "arel", "memcache-client", "coffee-script-source", "bones", "rdoc", "rack-ssl", "hike", "libv8", "ref"]
Query Gemcutter Dependency Endpoint API: mail text-format erubis journey rack-test rack builder rack-cache activemodel i18n rack-mount tzinfo arel memcache-client coffee-script-source bones rdoc rack-ssl hike libv8 ref
Fetching from: https://rubygems.org/api/v1/dependencies?gems=mail,text-format,erubis,journey,rack-test,rack,builder,rack-cache,activemodel,i18n,rack-mount,tzinfo,arel,memcache-client,coffee-script-source,bones,rdoc,rack-ssl,hike,libv8,ref
HTTP Success
Query List: ["bcrypt-ruby", "little-plugger", "loquacious", "rspec", "bones-git", "bones-extras", "abstract", "mime-types", "tlsmail", "treetop", "hoe", "ZenTest", "RubyInline", "test-spec", "camping", "fcgi", "mongrel", "ruby-openid", "thin", "multimap", "minitest", "text-hyphen"]
Query Gemcutter Dependency Endpoint API: bcrypt-ruby little-plugger loquacious rspec bones-git bones-extras abstract mime-types tlsmail treetop hoe ZenTest RubyInline test-spec camping fcgi mongrel ruby-openid thin multimap minitest text-hyphen
Fetching from: https://rubygems.org/api/v1/dependencies?gems=bcrypt-ruby,little-plugger,loquacious,rspec,bones-git,bones-extras,abstract,mime-types,tlsmail,treetop,hoe,ZenTest,RubyInline,test-spec,camping,fcgi,mongrel,ruby-openid,thin,multimap,minitest,text-hyphen
HTTP Success
Query List: ["bones-rcov", "bones-rubyforge", "bones-rspec", "bones-zentest", "git", "markaby", "metaid", "mab", "rubyforge", "gemcutter", "archive-tar-minitar", "nokogiri", "rcov", "daemons", "fastthread", "gem_plugin", "cgi_multipart_eof_fix", "rspec-core", "rspec-expectations", "rspec-mocks", "cucumber", "diff-lcs", "syntax", "spicycode-rcov", "ruby-yadis", "flexmock", "mocha", "eventmachine", "eventmachine-le", "http_parser.rb", "preforker", "polyglot", "facets"]
Query Gemcutter Dependency Endpoint API: bones-rcov bones-rubyforge bones-rspec bones-zentest git markaby metaid mab rubyforge gemcutter archive-tar-minitar nokogiri rcov daemons fastthread gem_plugin cgi_multipart_eof_fix rspec-core rspec-expectations rspec-mocks cucumber diff-lcs syntax spicycode-rcov ruby-yadis flexmock mocha eventmachine eventmachine-le http_parser.rb preforker polyglot facets
Fetching from: https://rubygems.org/api/v1/dependencies?gems=bones-rcov,bones-rubyforge,bones-rspec,bones-zentest,git,markaby,metaid,mab,rubyforge,gemcutter,archive-tar-minitar,nokogiri,rcov,daemons,fastthread,gem_plugin,cgi_multipart_eof_fix,rspec-core,rspec-expectations,rspec-mocks,cucumber,diff-lcs,syntax,spicycode-rcov,ruby-yadis,flexmock,mocha,eventmachine,eventmachine-le,http_parser.rb,preforker,polyglot,facets
HTTP Success
Query List: ["term-ansicolor", "gherkin", "json_pure", "net-scp", "metaclass", "racc", "tenderlove-frex", "rake-compiler", "rexical", "weakling"]
Query Gemcutter Dependency Endpoint API: term-ansicolor gherkin json_pure net-scp metaclass racc tenderlove-frex rake-compiler rexical weakling
Fetching from: https://rubygems.org/api/v1/dependencies?gems=term-ansicolor,gherkin,json_pure,net-scp,metaclass,racc,tenderlove-frex,rake-compiler,rexical,weakling
HTTP Success
Query List: ["trollop", "spruz", "net-ssh"]
Query Gemcutter Dependency Endpoint API: trollop spruz net-ssh
Fetching from: https://rubygems.org/api/v1/dependencies?gems=trollop,spruz,net-ssh
HTTP Success
Query List: ["needle", "jruby-pageant", "echoe"]
Query Gemcutter Dependency Endpoint API: needle jruby-pageant echoe
Fetching from: https://rubygems.org/api/v1/dependencies?gems=needle,jruby-pageant,echoe
HTTP Success
Query List: ["highline", "allison"]
Query Gemcutter Dependency Endpoint API: highline allison
Fetching from: https://rubygems.org/api/v1/dependencies?gems=highline,allison
HTTP Success
Query List: ["termios"]
Query Gemcutter Dependency Endpoint API: termios
Fetching from: https://rubygems.org/api/v1/dependencies?gems=termios
HTTP Success
Query List: []
Unmet Dependencies: ["tenderlove-frex", "spicycode-rcov"]
Fetching gem metadata from https://rubygems.org/
Query List: ["tenderlove-frex", "spicycode-rcov"]
Query Gemcutter Dependency Endpoint API: tenderlove-frex spicycode-rcov
Fetching from: https://rubygems.org/api/v1/dependencies?gems=tenderlove-frex,spicycode-rcov
HTTP Success
Query List: []
Unfortunately, a fatal error has occurred. Please see the Bundler 
troubleshooting documentation at http://bit.ly/bundler-issues. Thanks! 
/home/sameer/.rvm/gems/ruby-1.9.3-p286/bin/ruby_noexec_wrapper:14: stack level too deep (SystemStackError)
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bundle config
Settings are listed in order of priority. The top value will be used.

bundle -v
Bundler version 1.2.1
ruby -v
ruby 1.9.3p286 (2012-10-12 revision 37165) [i386-cygwin]
gem -v
1.8.24
rvm -v

rvm 1.16.12 () by Wayne E. Seguin <wayneeseguin@gmail.com>, Michal Papis <mpapis@gmail.com> [https://rvm.io/]

gem list rubygems-bundler

*** LOCAL GEMS ***

rubygems-bundler (1.1.0)
gem list open_gem

*** LOCAL GEMS ***

Exactly the same problem for me

Same thing happened to me. I uninstalled ruby from the cygwin setup file, and when I ram ruby -v in CMD, it was still there!

Turns out, I have other instances of ruby.exe in the "PATH" environment variables. So check your environment variables, uninstall everything and see if there is another ruby file it is pointing to.