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February 26, 2018 06:03
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sga (brewsci/science/sga) on macOS 10.13.3 - Homebrew build logs
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| Homebrew build logs for brewsci/science/sga on macOS 10.13.3 | |
| Build date: 2018-02-25 21:58:47 |
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| HOMEBREW_VERSION: 1.5.4-46-gef1924e | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: ef1924e1f3f2becefe68e4ee6c3967eeee998fcf | |
| Last commit: 10 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: df5743ae7310adebb98ac8ed331246ecc98a344d | |
| Core tap last commit: 17 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_BINTRAY_KEY: set | |
| HOMEBREW_BINTRAY_USER: sjackman | |
| HOMEBREW_DEVELOPER: 1 | |
| HOMEBREW_GITHUB_API_TOKEN: set | |
| HOMEBREW_NO_AUTO_UPDATE: 1 | |
| HOMEBREW_VISUAL: gvim | |
| CPU: octa-core 64-bit haswell | |
| Homebrew Ruby: 2.3.3 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.3/bin/ruby | |
| Clang: 9.0 build 900 | |
| Git: 2.14.3 => /Applications/Xcode.app/Contents/Developer/usr/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Perl: /usr/bin/perl | |
| Python: /usr/local/opt/python/libexec/bin/python => /usr/local/Cellar/python/2.7.14_3/Frameworks/Python.framework/Versions/2.7/bin/python2.7 | |
| Ruby: /usr/local/bin/ruby => /usr/local/Cellar/ruby/2.5.0/bin/ruby | |
| Java: 9.0.4 | |
| macOS: 10.13.3-x86_64 | |
| Xcode: 9.2 | |
| CLT: 9.2.0.0.1.1510905681 | |
| X11: 2.7.11 => /opt/X11 |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry or file an issue; just ignore this. Thanks! | |
| Warning: Unbrewed dylibs were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected dylibs: | |
| /usr/local/lib/libtcl8.6.dylib | |
| /usr/local/lib/libtk8.6.dylib | |
| Warning: Unbrewed header files were found in /usr/local/include. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected header files: | |
| /usr/local/include/fakemysql.h | |
| /usr/local/include/fakepq.h | |
| /usr/local/include/fakesql.h | |
| /usr/local/include/itcl.h | |
| /usr/local/include/itcl2TclOO.h | |
| /usr/local/include/itclDecls.h | |
| /usr/local/include/itclInt.h | |
| /usr/local/include/itclIntDecls.h | |
| /usr/local/include/itclMigrate2TclCore.h | |
| /usr/local/include/itclTclIntStubsFcn.h | |
| /usr/local/include/mysqlStubs.h | |
| /usr/local/include/odbcStubs.h | |
| /usr/local/include/pqStubs.h | |
| /usr/local/include/tcl.h | |
| /usr/local/include/tclDecls.h | |
| /usr/local/include/tclOO.h | |
| /usr/local/include/tclOODecls.h | |
| /usr/local/include/tclPlatDecls.h | |
| /usr/local/include/tclThread.h | |
| /usr/local/include/tclTomMath.h | |
| /usr/local/include/tclTomMathDecls.h | |
| /usr/local/include/tdbc.h | |
| /usr/local/include/tdbcDecls.h | |
| /usr/local/include/tdbcInt.h | |
| /usr/local/include/tk.h | |
| /usr/local/include/tkDecls.h | |
| /usr/local/include/tkPlatDecls.h | |
| Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected .pc files: | |
| /usr/local/lib/pkgconfig/tcl.pc | |
| /usr/local/lib/pkgconfig/tk.pc | |
| Warning: Unbrewed static libraries were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected static libraries: | |
| /usr/local/lib/libtclstub8.6.a | |
| /usr/local/lib/libtkstub8.6.a | |
| Warning: You have unlinked kegs in your Cellar | |
| Leaving kegs unlinked can lead to build-trouble and cause brews that depend on | |
| those kegs to fail to run properly once built. Run `brew link` on these: | |
| numpy | |
| matplotlib | |
| scipy |
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| brewsci/bio/sga |
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| Formula: sga | |
| Tap: brewsci/science | |
| Path: /usr/local/Homebrew/Library/Taps/brewsci/homebrew-science/Formula/sga.rb |
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| 2018-02-25 21:58:32 -0800 | |
| ./autogen.sh | |
| + aclocal | |
| + autoconf | |
| + autoheader | |
| + automake -a | |
| configure.ac:12: installing './compile' | |
| configure.ac:5: installing './install-sh' | |
| configure.ac:5: installing './missing' | |
| Algorithm/Makefile.am: installing './depcomp' |
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| 2018-02-25 21:58:36 -0800 | |
| ./configure | |
| --disable-dependency-tracking | |
| --prefix=/usr/local/Cellar/sga/0.10.15_1 | |
| --with-bamtools=/usr/local/opt/bamtools | |
| --with-sparsehash=/usr/local/opt/google-sparsehash | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking whether build environment is sane... yes | |
| checking for a thread-safe mkdir -p... ./install-sh -c -d | |
| checking for gawk... no | |
| checking for mawk... no | |
| checking for nawk... no | |
| checking for awk... awk | |
| checking whether make sets $(MAKE)... yes | |
| checking whether make supports nested variables... yes | |
| checking whether the C++ compiler works... yes | |
| checking for C++ compiler default output file name... a.out | |
| checking for suffix of executables... | |
| checking whether we are cross compiling... no | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C++ compiler... yes | |
| checking whether clang++ accepts -g... yes | |
| checking for style of include used by make... GNU | |
| checking dependency style of clang++... none | |
| checking for gcc... clang | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether clang accepts -g... yes | |
| checking for clang option to accept ISO C89... none needed | |
| checking whether clang understands -c and -o together... yes | |
| checking dependency style of clang... none | |
| checking for ranlib... ranlib | |
| checking how to run the C++ preprocessor... clang++ -E | |
| checking for grep that handles long lines and -e... /usr/bin/grep | |
| checking for egrep... /usr/bin/grep -E | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking zlib.h usability... yes | |
| checking zlib.h presence... yes | |
| checking for zlib.h... yes | |
| checking for library containing gzopen... -lz | |
| checking for library containing clock_gettime... none required | |
| checking for OpenMP flag of C++ compiler... unknown | |
| checking for host type... warning: multi-threading is not available since OSX does not support un-named pthread semaphores. | |
| checking google/sparse_hash_set usability... yes | |
| checking google/sparse_hash_set presence... yes | |
| checking for google/sparse_hash_set... yes | |
| checking for google/sparse_hash_set... (cached) yes | |
| checking google/sparse_hash_map usability... yes | |
| checking google/sparse_hash_map presence... yes | |
| checking for google/sparse_hash_map... yes | |
| checking unordered_map usability... yes | |
| checking unordered_map presence... yes | |
| checking for unordered_map... yes | |
| checking tr1/unordered_map usability... no | |
| checking tr1/unordered_map presence... no | |
| checking for tr1/unordered_map... no | |
| checking ext/hash_map usability... yes | |
| checking ext/hash_map presence... yes | |
| checking for ext/hash_map... yes | |
| checking unordered_set usability... yes | |
| checking unordered_set presence... yes | |
| checking for unordered_set... yes | |
| checking tr1/unordered_set usability... no | |
| checking tr1/unordered_set presence... no | |
| checking for tr1/unordered_set... no | |
| checking ext/hash_set usability... yes | |
| checking ext/hash_set presence... yes | |
| checking for ext/hash_set... yes | |
| checking api/BamReader.h usability... yes | |
| checking api/BamReader.h presence... yes | |
| checking for api/BamReader.h... yes | |
| checking that generated files are newer than configure... done | |
| configure: creating ./config.status | |
| config.status: creating Makefile | |
| config.status: creating bin/Makefile | |
| config.status: creating Thirdparty/Makefile | |
| config.status: creating Util/Makefile | |
| config.status: creating SQG/Makefile | |
| config.status: creating Bigraph/Makefile | |
| config.status: creating Algorithm/Makefile | |
| config.status: creating StringGraph/Makefile | |
| config.status: creating Concurrency/Makefile | |
| config.status: creating SuffixTools/Makefile | |
| config.status: creating GraphDiff/Makefile | |
| config.status: creating Scaffold/Makefile | |
| config.status: creating SGA/Makefile | |
| config.status: creating config.h | |
| config.status: executing depfiles commands |
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| clang++ called with: --version | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native --version -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -v | |
| superenv executed: clang++ -v | |
| clang++ called with: -V | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -V -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -qversion | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -qversion -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -c conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: --version | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=native --version -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -v | |
| superenv executed: clang -v | |
| clang called with: -V | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=native -V -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -qversion | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=native -qversion -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -c conftest.c | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=native -c conftest.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -g conftest.c | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=native -c -g conftest.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -g -O2 conftest.c | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=native -c -g -O2 conftest.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c conftest.c -o conftest2.o | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=native -c conftest.c -o conftest2.o -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c conftest.c -o conftest2.o | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=native -c conftest.c -o conftest2.o -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -o conftest -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -o conftest -g -O2 conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest -g -O2 conftest.cpp -lz | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 conftest.cpp -lz -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest -g -O2 conftest.cpp -lz | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 conftest.cpp -lz -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest -g -O2 -fopenmp conftest.cpp -lz | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 -fopenmp conftest.cpp -lz -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest -g -O2 -openmp conftest.cpp -lz | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 -openmp conftest.cpp -lz -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest -g -O2 -mp conftest.cpp -lz | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 -mp conftest.cpp -lz -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest -g -O2 -xopenmp conftest.cpp -lz | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 -xopenmp conftest.cpp -lz -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest -g -O2 -omp conftest.cpp -lz | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 -omp conftest.cpp -lz -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest -g -O2 -qsmp=omp conftest.cpp -lz | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest -g -O2 -qsmp=omp conftest.cpp -lz -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -o conftest conftest.cpp -lz | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -Os -march=native -o conftest conftest.cpp -lz -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -pipe -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -Os -march=native -c -std=c++98 -O3 -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -E -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools conftest.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
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| 2018-02-25 21:58:47 -0800 | |
| make | |
| install | |
| Making install in bin | |
| make[2]: Nothing to be done for `install-data-am'. | |
| .././install-sh -c -d '/usr/local/Cellar/sga/0.10.15_1/bin' | |
| /usr/bin/install -c sga-astat.py sga-bam2de.pl sga-mergeDriver.pl '/usr/local/Cellar/sga/0.10.15_1/bin' | |
| Making install in Thirdparty | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o gzstream.o gzstream.C | |
| clang -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -std=gnu99 -O3 -c -o stdaln.o stdaln.c | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o overlapper.o overlapper.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o multiple_alignment.o multiple_alignment.cpp | |
| clang -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -std=gnu99 -O3 -c -o bcr.o bcr.c | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o MurmurHash3.o MurmurHash3.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o count_min_sketch.o count_min_sketch.cpp | |
| rm -f libthirdparty.a | |
| ar cru libthirdparty.a gzstream.o stdaln.o overlapper.o multiple_alignment.o bcr.o MurmurHash3.o count_min_sketch.o | |
| ranlib libthirdparty.a | |
| make[2]: Nothing to be done for `install-exec-am'. | |
| make[2]: Nothing to be done for `install-data-am'. | |
| Making install in Util | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Util.o `test -f 'Util.cpp' || echo './'`Util.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Alphabet.o `test -f 'Alphabet.cpp' || echo './'`Alphabet.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Contig.o `test -f 'Contig.cpp' || echo './'`Contig.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-ReadTable.o `test -f 'ReadTable.cpp' || echo './'`ReadTable.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-ReadInfoTable.o `test -f 'ReadInfoTable.cpp' || echo './'`ReadInfoTable.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-SeqReader.o `test -f 'SeqReader.cpp' || echo './'`SeqReader.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-DNAString.o `test -f 'DNAString.cpp' || echo './'`DNAString.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Match.o `test -f 'Match.cpp' || echo './'`Match.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Pileup.o `test -f 'Pileup.cpp' || echo './'`Pileup.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-BitChar.o `test -f 'BitChar.cpp' || echo './'`BitChar.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Interval.o `test -f 'Interval.cpp' || echo './'`Interval.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-SeqCoord.o `test -f 'SeqCoord.cpp' || echo './'`SeqCoord.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-MultiOverlap.o `test -f 'MultiOverlap.cpp' || echo './'`MultiOverlap.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-QualityVector.o `test -f 'QualityVector.cpp' || echo './'`QualityVector.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-SGAStats.o `test -f 'SGAStats.cpp' || echo './'`SGAStats.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Quality.o `test -f 'Quality.cpp' || echo './'`Quality.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-PrimerScreen.o `test -f 'PrimerScreen.cpp' || echo './'`PrimerScreen.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-BitVector.o `test -f 'BitVector.cpp' || echo './'`BitVector.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-CorrectionThresholds.o `test -f 'CorrectionThresholds.cpp' || echo './'`CorrectionThresholds.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-KmerDistribution.o `test -f 'KmerDistribution.cpp' || echo './'`KmerDistribution.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-ClusterReader.o `test -f 'ClusterReader.cpp' || echo './'`ClusterReader.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-MultiAlignment.o `test -f 'MultiAlignment.cpp' || echo './'`MultiAlignment.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-StdAlnTools.o `test -f 'StdAlnTools.cpp' || echo './'`StdAlnTools.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-VCFUtil.o `test -f 'VCFUtil.cpp' || echo './'`VCFUtil.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-QualityTable.o `test -f 'QualityTable.cpp' || echo './'`QualityTable.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-BloomFilter.o `test -f 'BloomFilter.cpp' || echo './'`BloomFilter.cpp | |
| clang++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-VariantIndex.o `test -f 'VariantIndex.cpp' || echo './'`VariantIndex.cpp | |
| VariantIndex.cpp:89:16: error: call to 'abs' is ambiguous | |
| if(abs(record.position - position) < distance) | |
| ^~~ | |
| /usr/include/stdlib.h:137:6: note: candidate function | |
| int abs(int) __pure2; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/stdlib.h:115:44: note: candidate function | |
| inline _LIBCPP_INLINE_VISIBILITY long abs( long __x) _NOEXCEPT {return labs(__x);} | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/stdlib.h:117:44: note: candidate function | |
| inline _LIBCPP_INLINE_VISIBILITY long long abs(long long __x) _NOEXCEPT {return llabs(__x);} | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/math.h:693:1: note: candidate function | |
| abs(float __lcpp_x) _NOEXCEPT {return ::fabsf(__lcpp_x);} | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/math.h:697:1: note: candidate function | |
| abs(double __lcpp_x) _NOEXCEPT {return ::fabs(__lcpp_x);} | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/math.h:701:1: note: candidate function | |
| abs(long double __lcpp_x) _NOEXCEPT {return ::fabsl(__lcpp_x);} | |
| ^ | |
| 1 error generated. | |
| make[1]: *** [libutil_a-VariantIndex.o] Error 1 | |
| make[1]: *** Waiting for unfinished jobs.... | |
| make: *** [install-recursive] Error 1 | |
| HOMEBREW_VERSION: 1.5.4-46-gef1924e | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: ef1924e1f3f2becefe68e4ee6c3967eeee998fcf | |
| Last commit: 10 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: df5743ae7310adebb98ac8ed331246ecc98a344d | |
| Core tap last commit: 17 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_ARCHFLAGS: | |
| HOMEBREW_BINTRAY_USER: sjackman | |
| HOMEBREW_CACHE: /Users/sjackman/Library/Caches/Homebrew | |
| HOMEBREW_CC: clang | |
| HOMEBREW_CCCFG: sa | |
| HOMEBREW_CXX: clang++ | |
| HOMEBREW_DEPENDENCIES: autoconf,automake,google-sparsehash,bamtools | |
| HOMEBREW_DEVELOPER: 1 | |
| HOMEBREW_ERROR_PIPE: /tmp/homebrew20180225-73907-1dz53ns/socket | |
| HOMEBREW_FORMULA_PREFIX: /usr/local/Cellar/sga/0.10.15_1 | |
| HOMEBREW_ISYSTEM_PATHS: /usr/local/include:/usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| HOMEBREW_LIBRARY_PATHS: /usr/local/lib:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| HOMEBREW_NO_AUTO_UPDATE: 1 | |
| HOMEBREW_OPT: /usr/local/opt | |
| HOMEBREW_OPTFLAGS: -march=native | |
| HOMEBREW_OPTIMIZATION_LEVEL: Os | |
| HOMEBREW_PREFER_CLT_PROXIES: 1 | |
| HOMEBREW_TEMP: /tmp | |
| HOMEBREW_VISUAL: gvim | |
| CPU: octa-core 64-bit haswell | |
| Homebrew Ruby: 2.3.3 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.3/bin/ruby | |
| Clang: 9.0 build 900 | |
| Git: 2.14.3 => /Applications/Xcode.app/Contents/Developer/usr/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Perl: N/A | |
| Python: /usr/local/opt/python/libexec/bin/python => /usr/local/Cellar/python/2.7.14_3/Frameworks/Python.framework/Versions/2.7/bin/python2.7 | |
| Ruby: N/A | |
| Java: 9.0.4 | |
| macOS: 10.13.3-x86_64 | |
| Xcode: 9.2 | |
| CLT: 9.2.0.0.1.1510905681 | |
| X11: 2.7.11 => /opt/X11 | |
| HOMEBREW_CC: clang | |
| HOMEBREW_CXX: clang++ | |
| MAKEFLAGS: -j8 | |
| CMAKE_PREFIX_PATH: /usr/local | |
| CMAKE_INCLUDE_PATH: /usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| PKG_CONFIG_PATH: /usr/local/opt/google-sparsehash/lib/pkgconfig:/usr/local/opt/bamtools/lib/pkgconfig | |
| PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.13 | |
| ACLOCAL_PATH: /usr/local/share/aclocal | |
| PATH: /usr/local/Homebrew/Library/Homebrew/shims/super:/usr/local/opt/autoconf/bin:/usr/local/opt/automake/bin:/usr/local/opt/bamtools/bin:/usr/bin:/bin:/usr/sbin:/sbin |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o overlapper.o overlapper.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o overlapper.o overlapper.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o gzstream.o gzstream.C | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o gzstream.o gzstream.C -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -std=gnu99 -O3 -c -o bcr.o bcr.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -std=gnu99 -c -o bcr.o bcr.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -std=gnu99 -O3 -c -o stdaln.o stdaln.c | |
| superenv removed: -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -std=gnu99 -c -o stdaln.o stdaln.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o count_min_sketch.o count_min_sketch.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o count_min_sketch.o count_min_sketch.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o multiple_alignment.o multiple_alignment.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o multiple_alignment.o multiple_alignment.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o MurmurHash3.o MurmurHash3.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o MurmurHash3.o MurmurHash3.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Alphabet.o Alphabet.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-Alphabet.o Alphabet.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-DNAString.o DNAString.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-DNAString.o DNAString.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Util.o Util.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-Util.o Util.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Match.o Match.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-Match.o Match.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-ReadTable.o ReadTable.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-ReadTable.o ReadTable.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-SeqReader.o SeqReader.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-SeqReader.o SeqReader.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-ReadInfoTable.o ReadInfoTable.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-ReadInfoTable.o ReadInfoTable.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Contig.o Contig.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-Contig.o Contig.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Pileup.o Pileup.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-Pileup.o Pileup.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-BitChar.o BitChar.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-BitChar.o BitChar.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Interval.o Interval.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-Interval.o Interval.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-SeqCoord.o SeqCoord.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-SeqCoord.o SeqCoord.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-MultiOverlap.o MultiOverlap.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-MultiOverlap.o MultiOverlap.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-QualityVector.o QualityVector.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-QualityVector.o QualityVector.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-SGAStats.o SGAStats.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-SGAStats.o SGAStats.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-Quality.o Quality.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-Quality.o Quality.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-PrimerScreen.o PrimerScreen.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-PrimerScreen.o PrimerScreen.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-BitVector.o BitVector.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-BitVector.o BitVector.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-CorrectionThresholds.o CorrectionThresholds.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-CorrectionThresholds.o CorrectionThresholds.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-KmerDistribution.o KmerDistribution.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-KmerDistribution.o KmerDistribution.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-ClusterReader.o ClusterReader.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-ClusterReader.o ClusterReader.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-MultiAlignment.o MultiAlignment.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-MultiAlignment.o MultiAlignment.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-StdAlnTools.o StdAlnTools.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-StdAlnTools.o StdAlnTools.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-VCFUtil.o VCFUtil.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-VCFUtil.o VCFUtil.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-QualityTable.o QualityTable.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-QualityTable.o QualityTable.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-BloomFilter.o BloomFilter.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-BloomFilter.o BloomFilter.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wall -Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-VariantIndex.o VariantIndex.cpp | |
| superenv removed: -Wall -Wextra -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I/usr/local/opt/google-sparsehash/include -I/usr/local/opt/bamtools/include -I/usr/local/opt/bamtools/include/bamtools -Wno-unknown-pragmas -std=c++98 -c -o libutil_a-VariantIndex.o VariantIndex.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
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