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July 27, 2017 10:47
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lrsim on macOS 10.12.5 - Homebrew build logs
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| Homebrew build logs for lrsim on macOS 10.12.5 | |
| Build date: 2017-07-27 12:47:27 |
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| HOMEBREW_VERSION: 1.2.5-14-g88b762f-dirty | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 88b762f78447842a6187e0fda49c9493f029cbef | |
| Last commit: 2 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 6dc02f05add7cb42a42a62083ac0b701943f5309 | |
| Core tap last commit: 19 minutes ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_REPOSITORY: /usr/local/Homebrew | |
| HOMEBREW_CELLAR: /usr/local/Cellar | |
| HOMEBREW_BOTTLE_DOMAIN: https://homebrew.bintray.com | |
| CPU: octa-core 64-bit haswell | |
| Homebrew Ruby: 2.0.0-p648 | |
| Clang: 8.1 build 802 | |
| Git: 2.11.0 => /Applications/Xcode.app/Contents/Developer/usr/bin/git | |
| Perl: /usr/local/bin/perl => /usr/local/Cellar/perl/5.24.1/bin/perl | |
| Python: /usr/bin/python | |
| Ruby: /usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby | |
| Java: 1.8.0_141 | |
| macOS: 10.12.5-x86_64 | |
| Xcode: 8.3.3 | |
| CLT: 8.3.2.0.1.1492020469 | |
| X11: N/A |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry and just ignore them. Thanks! | |
| Warning: You have uncommitted modifications to Homebrew | |
| If this is a surprise to you, then you should stash these modifications. | |
| Stashing returns Homebrew to a pristine state but can be undone | |
| should you later need to do so for some reason. | |
| cd /usr/local/Homebrew/Library && git stash && git clean -d -f |
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| lrsim |
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| 2017-07-27 12:47:27 +0200 | |
| make | |
| extractReads | |
| clang++ extractReads.cpp -o extractReads |
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| clang++ called with: extractReads.cpp -o extractReads | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -pipe -w -Os -march=native extractReads.cpp -o extractReads -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| 2017-07-27 12:47:27 +0200 | |
| make | |
| msort.o | |
| sort_funs.o | |
| stdhashc.o | |
| clang -c -o msort.o msort.c | |
| clang -c -o sort_funs.o sort_funs.c | |
| clang++ -c -o stdhashc.o stdhashc.cc | |
| In file included from stdhashc.cc:2: | |
| ./stdhash.hh:496:13: error: use of undeclared identifier 'direct_insert_aux' | |
| int ret = direct_insert_aux(key, this->n_capacity, this->keys, this->flags, &i); | |
| ^ | |
| this-> | |
| stdhashc.cc:72:34: note: in instantiation of member function 'hash_map_misc<unsigned int, int>::insert' requested here | |
| return ((hashii_cpp_t*)h->ptr)->insert(key, value); | |
| ^ | |
| ./stdhash.hh:295:13: note: must qualify identifier to find this declaration in dependent base class | |
| inline int direct_insert_aux(const keytype_t &key, hashint_t m, keytype_t *K, __lh3_flag_t *F, hashint_t *i) { | |
| ^ | |
| 1 error generated. | |
| make: *** [stdhashc.o] Error 1 | |
| make: *** Waiting for unfinished jobs.... | |
| HOMEBREW_VERSION: 1.2.5-14-g88b762f-dirty | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 88b762f78447842a6187e0fda49c9493f029cbef | |
| Last commit: 2 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 6dc02f05add7cb42a42a62083ac0b701943f5309 | |
| Core tap last commit: 19 minutes ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_REPOSITORY: /usr/local/Homebrew | |
| HOMEBREW_CELLAR: /usr/local/Cellar | |
| HOMEBREW_BOTTLE_DOMAIN: https://homebrew.bintray.com | |
| CPU: octa-core 64-bit haswell | |
| Homebrew Ruby: 2.0.0-p648 | |
| Clang: 8.1 build 802 | |
| Git: 2.11.0 => /Applications/Xcode.app/Contents/Developer/usr/bin/git | |
| Perl: /usr/bin/perl | |
| Python: N/A | |
| Ruby: /usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby | |
| Java: 1.8.0_141 | |
| macOS: 10.12.5-x86_64 | |
| Xcode: 8.3.3 | |
| CLT: 8.3.2.0.1.1492020469 | |
| X11: N/A | |
| HOMEBREW_CC: clang | |
| HOMEBREW_CXX: clang++ | |
| SDKROOT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk | |
| MAKEFLAGS: -j8 | |
| CMAKE_PREFIX_PATH: /usr/local | |
| CMAKE_INCLUDE_PATH: /usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| MACOSX_DEPLOYMENT_TARGET: 10.12 | |
| PKG_CONFIG_PATH: /usr/local/opt/xz/lib/pkgconfig:/usr/local/opt/htslib/lib/pkgconfig | |
| PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.12 | |
| ACLOCAL_PATH: /usr/local/share/aclocal | |
| PATH: /usr/local/Homebrew/Library/Homebrew/shims/super:/usr/local/opt/dwgsim/bin:/usr/local/opt/xz/bin:/usr/local/opt/htslib/bin:/usr/local/opt/samtools/bin:/usr/bin:/bin:/usr/sbin:/sbin |
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| clang called with: -c -o sort_funs.o sort_funs.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=native -c -o sort_funs.o sort_funs.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang++ called with: -c -o stdhashc.o stdhashc.cc | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -c -o stdhashc.o stdhashc.cc -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -o msort.o msort.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=native -c -o msort.o msort.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
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