Skip to content

Instantly share code, notes, and snippets.

@skurscheid

skurscheid/awkChromIDUCSCtoEnsembl.txt

Created October 27, 2016 22:52
Show Gist options
  • Save skurscheid/3ed16ae3079f7707455c5ca2e1498aa8 to your computer and use it in GitHub Desktop.
Save skurscheid/3ed16ae3079f7707455c5ca2e1498aa8 to your computer and use it in GitHub Desktop.
Download ZIP
manipulate BED files containing UCSC chromosome identifiers to conform with Ensembl annotation
Raw
awkChromIDUCSCtoEnsembl.txt
awk 'BEGIN {OFS = "\t";} {gsub("chr", "", $1); print $0}' < mm10_rRNA.bed >temp.bed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment