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slavailn/biomaRt_paralogs,R

Created May 17, 2021 05:00
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Get paralogs for the list of genes using biomaRt
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biomaRt_paralogs,R
# Get paralogs for the list of genes
library(biomaRt)
human <- useMart("ensembl", dataset = "hsapiens_gene_ensembl")
gene_id <- c("TPM1", "BOD1", "ADAP1")
results <- getBM(attributes = c("ensembl_gene_id",
"external_gene_name",
"hsapiens_paralog_ensembl_gene",
"hsapiens_paralog_associated_gene_name"),
filters = "external_gene_name",
values = gene_id,
mart = human)
results
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