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July 15, 2020 07:00
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RStudio diagnostics
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| RStudio Diagnostics Report | |
| ========================== | |
| WARNING: This report may contain sensitive security information and / or | |
| personally identifiable information. Please audit the below and redact any | |
| sensitive information before submitting your diagnostics report. | |
| Generated: Wed Jul 15 08:58:21 2020 | |
| RStudio Version | |
| -------------------------------------------------- | |
| 1.3.959 | |
| Session Information | |
| -------------------------------------------------- | |
| R version 3.6.3 (2020-02-29) | |
| Platform: x86_64-pc-linux-gnu (64-bit) | |
| Running under: Ubuntu 20.04 LTS | |
| Matrix products: default | |
| BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 | |
| LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0 | |
| locale: | |
| [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C | |
| [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 | |
| [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 | |
| [7] LC_PAPER=en_US.UTF-8 LC_NAME=C | |
| [9] LC_ADDRESS=C LC_TELEPHONE=C | |
| [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C | |
| attached base packages: | |
| [1] stats graphics grDevices utils datasets methods base | |
| loaded via a namespace (and not attached): | |
| [1] compiler_3.6.3 tools_3.6.3 | |
| System Information | |
| -------------------------------------------------- | |
| sysname : Linux | |
| release : 5.4.0-40-generic | |
| version : #44-Ubuntu SMP Tue Jun 23 00:01:04 UTC 2020 | |
| nodename : voltaire | |
| machine : x86_64 | |
| login : werner | |
| user : werner | |
| effective_user : werner | |
| Platform Information | |
| -------------------------------------------------- | |
| OS.type : unix | |
| file.sep : / | |
| dynlib.ext : .so | |
| GUI : X11 | |
| endian : little | |
| pkgType : source | |
| path.sep : : | |
| r_arch : | |
| Environment Variables | |
| -------------------------------------------------- | |
| _ : /usr/bin/rstudio | |
| _R_CHECK_COMPILATION_FLAGS_KNOWN_ : -Wformat -Werror=format-security -Wdate-time | |
| ANDROID_HOME : /home/werner/Android/Sdk | |
| AUTOJUMP_ERROR_PATH : /home/werner/.local/share/autojump/errors.log | |
| AUTOJUMP_SOURCED : 1 | |
| CLICOLOR : 1 | |
| CLICOLOR_FORCE : 1 | |
| CLUTTER_IM_MODULE : ibus | |
| COLORTERM : yes | |
| DBUS_SESSION_BUS_ADDRESS : unix:path=/run/user/1000/bus | |
| DEFAULTS_PATH : /usr/share/gconf/ubuntu.default.path | |
| DESKTOP_SESSION : ubuntu | |
| DISPLAY : :1 | |
| EDITOR : vim | |
| GDMSESSION : ubuntu | |
| GIT_ASKPASS : rpostback-askpass | |
| GJS_DEBUG_OUTPUT : stderr | |
| GJS_DEBUG_TOPICS : JS ERROR;JS LOG | |
| GNOME_DESKTOP_SESSION_ID : this-is-deprecated | |
| GNOME_SHELL_SESSION_MODE : ubuntu | |
| GNOME_TERMINAL_SCREEN : /org/gnome/Terminal/screen/041c3761_8986_4d25_8b7b_828e0b8992e5 | |
| GNOME_TERMINAL_SERVICE : :1.4759 | |
| GPG_AGENT_INFO : /run/user/1000/gnupg/S.gpg-agent:0:1 | |
| GTK_IM_MODULE : ibus | |
| GTK_MODULES : gail:atk-bridge | |
| HISTFILE : /home/werner/.zshhistory | |
| HISTSIZE : 50000 | |
| HOME : /home/werner | |
| IM_CONFIG_PHASE : 1 | |
| INVOCATION_ID : f35946878d504f5a89311c6d13340573 | |
| JAVA_HOME : /usr/lib/jvm/java-8-openjdk-amd64 | |
| JOURNAL_STREAM : 9:75929 | |
| LANG : en_US.UTF-8 | |
| LC_ADDRESS : de_DE.UTF-8 | |
| LC_ALL : en_US.UTF-8 | |
| LC_IDENTIFICATION : de_DE.UTF-8 | |
| LC_MEASUREMENT : de_DE.UTF-8 | |
| LC_MONETARY : de_DE.UTF-8 | |
| LC_NAME : de_DE.UTF-8 | |
| LC_NUMERIC : de_DE.UTF-8 | |
| LC_PAPER : de_DE.UTF-8 | |
| LC_TELEPHONE : de_DE.UTF-8 | |
| LC_TIME : de_DE.UTF-8 | |
| LD_LIBRARY_PATH : /usr/lib/R/lib::/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-8-openjdk-amd64/lib/server | |
| LESS : -R | |
| LN_S : ln -s | |
| LOGNAME : *** redacted *** | |
| LS_COLORS : no=00:fi=00:di=00;36:ln=01;36:pi=40;33:so=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:ex=01;32:*.tar=01;31:*.tgz=01;31:*.bz2=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.sit=01;31:*.hqx=01;31:*.jpg=01;35:*.png=01;35:*.gif=01;35:*.bmp=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mpg=01;35:*.avi=01;35:*.mov=01;35:*.app=01;33:*.c=00;33:*.php=00;33:*.pl=00;33:*.cgi=00;33: | |
| LSCOLORS : gxfxbEaEBxxEhEhBaDaCaD | |
| MAKE : make | |
| MANAGERPID : 7769 | |
| MANDATORY_PATH : /usr/share/gconf/ubuntu.mandatory.path | |
| NVM_BIN : /home/werner/.nvm/versions/node/v14.2.0/bin | |
| NVM_CD_FLAGS : -q | |
| NVM_DIR : /home/werner/.nvm | |
| OLDPWD : /home/werner/ | |
| PAGER : less | |
| PATH : /usr/lib/jvm/java-8-openjdk-amd64/bin:/home/werner/Documents/Software/android-studio/bin:/home/werner/Android/Sdk/tools:/home/werner/Android/Sdk/tools/bin:/home/werner/Android/Sdk/platform-tools:/home/werner/.autojump/bin:/home/werner/.pyenv/plugins/pyenv-virtualenv/shims:/home/werner/.pyenv/shims:/home/werner/.pyenv/bin:/home/werner/.rbenv/shims:/home/werner/.rbenv/bin:/home/werner/.rbenv/plugins/ruby-build/bin:/home/linuxbrew/.linuxbrew/sbin:/home/linuxbrew/.linuxbrew/bin:/home/werner/.local/bin:/home/werner/.nvm/versions/node/v14.2.0/bin:/home/werner/bin:/usr/local/bin:/usr/local/sbin:/usr/texbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/werner/.fzf/bin:/usr/lib/rstudio/bin/postback | |
| PWD : /home/werner/Downloads | |
| PYENV_SHELL : zsh | |
| PYENV_VIRTUALENV_INIT : 1 | |
| QT_ACCESSIBILITY : 1 | |
| QT_IM_MODULE : ibus | |
| QT4_IM_MODULE : ibus | |
| R_BROWSER : xdg-open | |
| R_BZIPCMD : /bin/bzip2 | |
| R_DOC_DIR : /usr/share/R/doc | |
| R_GZIPCMD : /bin/gzip -n | |
| R_HOME : /usr/lib/R | |
| R_INCLUDE_DIR : /usr/share/R/include | |
| R_LIBS_SITE : /usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library | |
| R_LIBS_USER : ~/R/x86_64-pc-linux-gnu-library/3.6 | |
| R_PAPERSIZE : letter | |
| R_PAPERSIZE_USER : a4 | |
| R_PDFVIEWER : /usr/bin/xdg-open | |
| R_PLATFORM : x86_64-pc-linux-gnu | |
| R_PRINTCMD : /usr/bin/lpr | |
| R_RD4PDF : times,inconsolata,hyper | |
| R_SESSION_TMPDIR : /tmp/RtmpJinDKj | |
| R_SHARE_DIR : /usr/share/R/share | |
| R_STRIP_SHARED_LIB : strip --strip-unneeded | |
| R_STRIP_STATIC_LIB : strip --strip-debug | |
| R_SYSTEM_ABI : linux,gcc,gxx,gfortran,gfortran | |
| R_TEXI2DVICMD : /usr/bin/texi2dvi | |
| R_UNZIPCMD : /usr/bin/unzip | |
| R_ZIPCMD : /usr/bin/zip | |
| RBENV_SHELL : zsh | |
| RMARKDOWN_MATHJAX_PATH : /usr/lib/rstudio/resources/mathjax-27 | |
| RS_PPM_FD_READ : 31 | |
| RS_PPM_FD_WRITE : 32 | |
| RS_RPOSTBACK_PATH : /usr/lib/rstudio/bin/rpostback | |
| RS_SHARED_SECRET : *** redacted *** | |
| RSTUDIO : 1 | |
| RSTUDIO_CONSOLE_COLOR : 256 | |
| RSTUDIO_CONSOLE_WIDTH : 80 | |
| RSTUDIO_PANDOC : /usr/lib/rstudio/bin/pandoc | |
| RSTUDIO_PROGRAM_MODE : desktop | |
| RSTUDIO_SESSION_PORT : 23635 | |
| RSTUDIO_USER_IDENTITY : werner | |
| RSTUDIO_WINUTILS : bin/winutils | |
| SAVEHIST : 10000 | |
| SED : /bin/sed | |
| SESSION_MANAGER : local/voltaire:@/tmp/.ICE-unix/8063,unix/voltaire:/tmp/.ICE-unix/8063 | |
| SHELL : /usr/bin/zsh | |
| SHLVL : 1 | |
| SPACESHIP_ROOT : /home/werner/.oh-my-zsh/custom/themes/spaceship-prompt | |
| SPACESHIP_VERSION : 3.9.0 | |
| SSH_AGENT_PID : 7993 | |
| SSH_AUTH_SOCK : *** redacted *** | |
| TAR : /bin/tar | |
| TERM : xterm-256color | |
| USER : werner | |
| USERNAME : *** redacted *** | |
| VIRTUAL_ENV_DISABLE_PROMPT : true | |
| VTE_VERSION : 6003 | |
| WINDOWPATH : 2 | |
| XAUTHORITY : /run/user/1000/gdm/Xauthority | |
| XDG_CONFIG_DIRS : /etc/xdg/xdg-ubuntu:/etc/xdg | |
| XDG_CURRENT_DESKTOP : ubuntu:GNOME | |
| XDG_DATA_DIRS : /usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop | |
| XDG_MENU_PREFIX : gnome- | |
| XDG_RUNTIME_DIR : /run/user/1000 | |
| XDG_SESSION_CLASS : user | |
| XDG_SESSION_DESKTOP : ubuntu | |
| XDG_SESSION_TYPE : x11 | |
| XMODIFIERS : @im=ibus | |
| R Version | |
| -------------------------------------------------- | |
| platform : x86_64-pc-linux-gnu | |
| arch : x86_64 | |
| os : linux-gnu | |
| system : x86_64, linux-gnu | |
| status : | |
| major : 3 | |
| minor : 6.3 | |
| year : 2020 | |
| month : 02 | |
| day : 29 | |
| svn rev : 77875 | |
| language : R | |
| version.string : R version 3.6.3 (2020-02-29) | |
| nickname : Holding the Windsock | |
| R Home | |
| -------------------------------------------------- | |
| /usr/lib/R | |
| R Search Path | |
| -------------------------------------------------- | |
| .GlobalEnv | |
| tools:rstudio | |
| package:stats | |
| package:graphics | |
| package:grDevices | |
| package:utils | |
| package:datasets | |
| package:methods | |
| Autoloads | |
| package:base | |
| R Library Paths | |
| -------------------------------------------------- | |
| /home/werner/R/x86_64-pc-linux-gnu-library/3.6 | |
| /usr/local/lib/R/site-library | |
| /usr/lib/R/site-library | |
| /usr/lib/R/library | |
| Loaded Packages | |
| -------------------------------------------------- | |
| base : /usr/lib/R/library/base | |
| compiler : /usr/lib/R/library/compiler | |
| datasets : /usr/lib/R/library/datasets | |
| graphics : /usr/lib/R/library/graphics | |
| grDevices : /usr/lib/R/library/grDevices | |
| methods : /usr/lib/R/library/methods | |
| stats : /usr/lib/R/library/stats | |
| tools : /usr/lib/R/library/tools | |
| utils : /usr/lib/R/library/utils | |
| Installed Packages | |
| -------------------------------------------------- | |
| Package LibPath Version | |
| 1 acepack /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.1 | |
| 2 askpass /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1 | |
| 3 assertthat /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.2.1 | |
| 4 backports /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1.6 | |
| 5 base64enc /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.1-3 | |
| 6 BH /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.72.0-3 | |
| 7 bitops /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0-6 | |
| 8 broom /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.5.6 | |
| 9 callr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 3.4.3 | |
| 10 caTools /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.18.0 | |
| 11 cellranger /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1.0 | |
| 12 checkmate /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.0.0 | |
| 13 cli /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.0.2 | |
| 14 clipr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.7.0 | |
| 15 clisymbols /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.2.0 | |
| 16 colorspace /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4-1 | |
| 17 conflicted /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.4 | |
| 18 corrr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.4.2 | |
| 19 crayon /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.3.4 | |
| 20 curl /home/werner/R/x86_64-pc-linux-gnu-library/3.6 4.3 | |
| 21 data.table /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.12.8 | |
| 22 DBI /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1.0 | |
| 23 dbplyr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.3 | |
| 24 dendextend /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.13.4 | |
| 25 desc /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.2.0 | |
| 26 digest /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.6.25 | |
| 27 dplyr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.8.5 | |
| 28 ellipsis /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.3.0 | |
| 29 evaluate /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.14 | |
| 30 fansi /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.4.1 | |
| 31 farver /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.0.3 | |
| 32 forcats /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.5.0 | |
| 33 foreach /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.5.0 | |
| 34 Formula /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.2-3 | |
| 35 fs /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.1 | |
| 36 gclus /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.3.2 | |
| 37 gdata /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.18.0 | |
| 38 generics /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.0.2 | |
| 39 geosphere /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.5-10 | |
| 40 getopt /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.20.3 | |
| 41 ggforce /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.3.1 | |
| 42 ggmap /home/werner/R/x86_64-pc-linux-gnu-library/3.6 3.0.0 | |
| 43 ggplot2 /home/werner/R/x86_64-pc-linux-gnu-library/3.6 3.3.0 | |
| 44 ggrepel /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.8.2 | |
| 45 glue /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.0 | |
| 46 gplots /home/werner/R/x86_64-pc-linux-gnu-library/3.6 3.0.3 | |
| 47 gridExtra /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.3 | |
| 48 gtable /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.3.0 | |
| 49 gtools /home/werner/R/x86_64-pc-linux-gnu-library/3.6 3.8.2 | |
| 50 haven /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.2.0 | |
| 51 highr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.8 | |
| 52 Hmisc /home/werner/R/x86_64-pc-linux-gnu-library/3.6 4.4-0 | |
| 53 hms /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.5.3 | |
| 54 htmlTable /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.13.3 | |
| 55 htmltools /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.4.0 | |
| 56 htmlwidgets /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.5.1 | |
| 57 httr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.1 | |
| 58 isoband /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.2.1 | |
| 59 iterators /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.12 | |
| 60 jpeg /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.1-8.1 | |
| 61 jsonlite /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.6.1 | |
| 62 knitr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.28 | |
| 63 labeling /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.3 | |
| 64 latticeExtra /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.6-29 | |
| 65 lifecycle /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.2.0 | |
| 66 lubridate /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.7.8 | |
| 67 magrittr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.5 | |
| 68 markdown /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1 | |
| 69 matrixStats /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.56.0 | |
| 70 memoise /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1.0 | |
| 71 mime /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.9 | |
| 72 mnormt /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.5-7 | |
| 73 modelr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.1.6 | |
| 74 munsell /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.5.0 | |
| 75 openssl /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.1 | |
| 76 optparse /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.6.6 | |
| 77 packrat /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.5.0 | |
| 78 pillar /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.3 | |
| 79 pkgbuild /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.7 | |
| 80 pkgconfig /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.0.3 | |
| 81 pkgload /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.2 | |
| 82 plogr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.2.0 | |
| 83 plyr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.8.6 | |
| 84 png /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.1-7 | |
| 85 polyclip /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.10-0 | |
| 86 praise /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.0 | |
| 87 prettyunits /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1.1 | |
| 88 processx /home/werner/R/x86_64-pc-linux-gnu-library/3.6 3.4.2 | |
| 89 progress /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.2.2 | |
| 90 ps /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.3.2 | |
| 91 psych /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.9.12.31 | |
| 92 purrr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.3.4 | |
| 93 qap /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.1-1 | |
| 94 R6 /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.4.1 | |
| 95 RColorBrewer /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1-2 | |
| 96 Rcpp /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.4.6 | |
| 97 RcppEigen /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.3.3.7.0 | |
| 98 readr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.3.1 | |
| 99 readxl /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.3.1 | |
| 100 registry /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.5-1 | |
| 101 rematch /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.1 | |
| 102 repr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1.0 | |
| 103 reprex /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.3.0 | |
| 104 reshape2 /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.4 | |
| 105 RgoogleMaps /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.5.3 | |
| 106 rjson /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.2.20 | |
| 107 rlang /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.4.5 | |
| 108 rmarkdown /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.1 | |
| 109 rprojroot /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.3-2 | |
| 110 rstudioapi /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.11 | |
| 111 rvest /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.3.5 | |
| 112 scales /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1.0 | |
| 113 selectr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.4-2 | |
| 114 seriation /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.2-8 | |
| 115 skimr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.1.1 | |
| 116 snakecase /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.11.0 | |
| 117 sp /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4-1 | |
| 118 stringi /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.6 | |
| 119 stringr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.4.0 | |
| 120 survival /home/werner/R/x86_64-pc-linux-gnu-library/3.6 3.1-12 | |
| 121 sys /home/werner/R/x86_64-pc-linux-gnu-library/3.6 3.3 | |
| 122 testthat /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.3.2 | |
| 123 tibble /home/werner/R/x86_64-pc-linux-gnu-library/3.6 3.0.1 | |
| 124 tidylog /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.1 | |
| 125 tidyr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.2 | |
| 126 tidyselect /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.0 | |
| 127 tidyverse /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.3.0 | |
| 128 tinytex /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.22 | |
| 129 TSP /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1-10 | |
| 130 tweenr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.0.1 | |
| 131 utf8 /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.1.4 | |
| 132 vctrs /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.2.4 | |
| 133 viridis /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.5.1 | |
| 134 viridisLite /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.3.0 | |
| 135 whisker /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.4 | |
| 136 withr /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.2.0 | |
| 137 xfun /home/werner/R/x86_64-pc-linux-gnu-library/3.6 0.13 | |
| 138 xml2 /home/werner/R/x86_64-pc-linux-gnu-library/3.6 1.3.2 | |
| 139 yaml /home/werner/R/x86_64-pc-linux-gnu-library/3.6 2.2.1 | |
| 140 base /usr/lib/R/library 3.6.3 | |
| 141 boot /usr/lib/R/library 1.3-24 | |
| 142 class /usr/lib/R/library 7.3-15 | |
| 143 cluster /usr/lib/R/library 2.1.0 | |
| 144 codetools /usr/lib/R/library 0.2-16 | |
| 145 compiler /usr/lib/R/library 3.6.3 | |
| 146 datasets /usr/lib/R/library 3.6.3 | |
| 147 foreign /usr/lib/R/library 0.8-75 | |
| 148 graphics /usr/lib/R/library 3.6.3 | |
| 149 grDevices /usr/lib/R/library 3.6.3 | |
| 150 grid /usr/lib/R/library 3.6.3 | |
| 151 KernSmooth /usr/lib/R/library 2.23-16 | |
| 152 lattice /usr/lib/R/library 0.20-40 | |
| 153 MASS /usr/lib/R/library 7.3-51.5 | |
| 154 Matrix /usr/lib/R/library 1.2-18 | |
| 155 methods /usr/lib/R/library 3.6.3 | |
| 156 mgcv /usr/lib/R/library 1.8-31 | |
| 157 nlme /usr/lib/R/library 3.1-144 | |
| 158 nnet /usr/lib/R/library 7.3-13 | |
| 159 parallel /usr/lib/R/library 3.6.3 | |
| 160 rpart /usr/lib/R/library 4.1-15 | |
| 161 spatial /usr/lib/R/library 7.3-11 | |
| 162 splines /usr/lib/R/library 3.6.3 | |
| 163 stats /usr/lib/R/library 3.6.3 | |
| 164 stats4 /usr/lib/R/library 3.6.3 | |
| 165 survival /usr/lib/R/library 3.1-8 | |
| 166 tcltk /usr/lib/R/library 3.6.3 | |
| 167 tools /usr/lib/R/library 3.6.3 | |
| 168 utils /usr/lib/R/library 3.6.3 | |
| R System Profile: /usr/lib/R/library/base/R/Rprofile | |
| -------------------------------------------------- | |
| ### This is the system Rprofile file. It is always run on startup. | |
| ### Additional commands can be placed in site or user Rprofile files | |
| ### (see ?Rprofile). | |
| ### Copyright (C) 1995-2015 The R Core Team | |
| ### Notice that it is a bad idea to use this file as a template for | |
| ### personal startup files, since things will be executed twice and in | |
| ### the wrong environment (user profiles are run in .GlobalEnv). | |
| .GlobalEnv <- globalenv() | |
| attach(NULL, name = "Autoloads") | |
| .AutoloadEnv <- as.environment(2) | |
| assign(".Autoloaded", NULL, envir = .AutoloadEnv) | |
| T <- TRUE | |
| F <- FALSE | |
| R.version <- structure(R.Version(), class = "simple.list") | |
| version <- R.version # for S compatibility | |
| ## for backwards compatibility only | |
| R.version.string <- R.version$version.string | |
| ## NOTA BENE: options() for non-base package functionality are in places like | |
| ## --------- ../utils/R/zzz.R | |
| options(keep.source = interactive()) | |
| options(warn = 0) | |
| # options(repos = c(CRAN="@CRAN@")) | |
| # options(BIOC = "http://www.bioconductor.org") | |
| options(timeout = 60) | |
| options(encoding = "native.enc") | |
| options(show.error.messages = TRUE) | |
| ## keep in sync with PrintDefaults() in ../../main/print.c : | |
| options(scipen = 0) | |
| options(max.print = 99999)# max. #{entries} in internal printMatrix() | |
| options(add.smooth = TRUE)# currently only used in 'plot.lm' | |
| options(stringsAsFactors = TRUE) | |
| if(!interactive() && is.null(getOption("showErrorCalls"))) | |
| options(showErrorCalls = TRUE) | |
| local({dp <- Sys.getenv("R_DEFAULT_PACKAGES") | |
| if(identical(dp, "")) ## it fact methods is done first | |
| dp <- c("datasets", "utils", "grDevices", "graphics", | |
| "stats", "methods") | |
| else if(identical(dp, "NULL")) dp <- character(0) | |
| else dp <- strsplit(dp, ",")[[1]] | |
| dp <- sub("[[:blank:]]*([[:alnum:]]+)", "\\1", dp) # strip whitespace | |
| options(defaultPackages = dp) | |
| }) | |
| ## Expand R_LIBS_* environment variables. | |
| Sys.setenv(R_LIBS_SITE = | |
| .expand_R_libs_env_var(Sys.getenv("R_LIBS_SITE"))) | |
| Sys.setenv(R_LIBS_USER = | |
| .expand_R_libs_env_var(Sys.getenv("R_LIBS_USER"))) | |
| local({ | |
| if(nzchar(tl <- Sys.getenv("R_SESSION_TIME_LIMIT_CPU"))) | |
| setSessionTimeLimit(cpu = tl) | |
| if(nzchar(tl <- Sys.getenv("R_SESSION_TIME_LIMIT_ELAPSED"))) | |
| setSessionTimeLimit(elapsed = tl) | |
| }) | |
| .First.sys <- function() | |
| { | |
| for(pkg in getOption("defaultPackages")) { | |
| res <- require(pkg, quietly = TRUE, warn.conflicts = FALSE, | |
| character.only = TRUE) | |
| if(!res) | |
| warning(gettextf('package %s in options("defaultPackages") was not found', sQuote(pkg)), | |
| call. = FALSE, domain = NA) | |
| } | |
| } | |
| ## called at C level in the startup process prior to .First.sys | |
| .OptRequireMethods <- function() | |
| { | |
| pkg <- "methods" # done this way to avoid R CMD check warning | |
| if(pkg %in% getOption("defaultPackages")) | |
| if(!require(pkg, quietly = TRUE, warn.conflicts = FALSE, | |
| character.only = TRUE)) | |
| warning('package "methods" in options("defaultPackages") was not found', | |
| call. = FALSE) | |
| } | |
| if(nzchar(Sys.getenv("R_BATCH"))) { | |
| .Last.sys <- function() | |
| { | |
| cat("> proc.time()\n") | |
| print(proc.time()) | |
| } | |
| ## avoid passing on to spawned R processes | |
| ## A system has been reported without Sys.unsetenv, so try this | |
| try(Sys.setenv(R_BATCH="")) | |
| } | |
| local({ | |
| if(nzchar(rv <- Sys.getenv("_R_RNG_VERSION_"))) | |
| suppressWarnings(RNGversion(rv)) | |
| }) | |
| ###-*- R -*- Unix Specific ---- | |
| .Library <- file.path(R.home(), "library") | |
| .Library.site <- Sys.getenv("R_LIBS_SITE") | |
| .Library.site <- if(!nchar(.Library.site)) file.path(R.home(), "site-library") else unlist(strsplit(.Library.site, ":")) | |
| .Library.site <- .Library.site[file.exists(.Library.site)] | |
| invisible(.libPaths(c(unlist(strsplit(Sys.getenv("R_LIBS"), ":")), | |
| unlist(strsplit(Sys.getenv("R_LIBS_USER"), ":") | |
| )))) | |
| local({ | |
| popath <- Sys.getenv("R_TRANSLATIONS", "") | |
| if(!nzchar(popath)) { | |
| paths <- file.path(.libPaths(), "translations", "DESCRIPTION") | |
| popath <- dirname(paths[file.exists(paths)][1]) | |
| } | |
| bindtextdomain("R", popath) | |
| bindtextdomain("R-base", popath) | |
| assign(".popath", popath, .BaseNamespaceEnv) | |
| }) | |
| local({ | |
| ## we distinguish between R_PAPERSIZE as set by the user and by configure | |
| papersize <- Sys.getenv("R_PAPERSIZE_USER") | |
| if(!nchar(papersize)) { | |
| lcpaper <- Sys.getlocale("LC_PAPER") # might be null: OK as nchar is 0 | |
| papersize <- if(nchar(lcpaper)) | |
| if(length(grep("(_US|_CA)", lcpaper))) "letter" else "a4" | |
| else Sys.getenv("R_PAPERSIZE") | |
| } | |
| options(papersize = papersize, | |
| printcmd = Sys.getenv("R_PRINTCMD"), | |
| dvipscmd = Sys.getenv("DVIPS", "dvips"), | |
| texi2dvi = Sys.getenv("R_TEXI2DVICMD"), | |
| browser = Sys.getenv("R_BROWSER"), | |
| pager = file.path(R.home(), "bin", "pager"), | |
| pdfviewer = Sys.getenv("R_PDFVIEWER"), | |
| useFancyQuotes = TRUE) | |
| }) | |
| ## non standard settings for the R.app GUI of the macOS port | |
| if(.Platform$GUI == "AQUA") { | |
| ## this is set to let RAqua use both X11 device and X11/TclTk | |
| if (Sys.getenv("DISPLAY") == "") | |
| Sys.setenv("DISPLAY" = ":0") | |
| ## this is to allow gfortran compiler to work | |
| Sys.setenv("PATH" = paste(Sys.getenv("PATH"),":/usr/local/bin",sep = "")) | |
| }## end "Aqua" | |
| ## de-dupe the environment on macOS (bug in Yosemite which affects things like PATH) | |
| if (grepl("^darwin", R.version$os)) local({ | |
| ## we have to de-dupe one at a time and re-check since the bug affects how | |
| ## environment modifications propagate | |
| while(length(dupes <- names(Sys.getenv())[table(names(Sys.getenv())) > 1])) { | |
| env <- dupes[1] | |
| value <- Sys.getenv(env) | |
| Sys.unsetenv(env) ## removes the dupes, good | |
| .Internal(Sys.setenv(env, value)) ## wrapper requries named vector, a pain, hence internal | |
| } | |
| }) | |
| local({ | |
| tests_startup <- Sys.getenv("R_TESTS") | |
| if(nzchar(tests_startup)) source(tests_startup) | |
| }) | |
| R Site Profile: /usr/lib/R/etc/Rprofile.site | |
| -------------------------------------------------- | |
| ## Emacs please make this -*- R -*- | |
| ## empty Rprofile.site for R on Debian | |
| ## | |
| ## Copyright (C) 2008 - 2018 Dirk Eddelbuettel and GPL'ed | |
| ## | |
| ## see help(Startup) for documentation on ~/.Rprofile and Rprofile.site | |
| # ## Example of .Rprofile | |
| # options(width=65, digits=5) | |
| # options(show.signif.stars=FALSE) | |
| # setHook(packageEvent("grDevices", "onLoad"), | |
| # function(...) grDevices::ps.options(horizontal=FALSE)) | |
| # set.seed(1234) | |
| # .First <- function() cat("\n Welcome to R!\n\n") | |
| # .Last <- function() cat("\n Goodbye!\n\n") | |
| # ## Example of Rprofile.site | |
| # local({ | |
| # # add MASS to the default packages, set a CRAN mirror | |
| # old <- getOption("defaultPackages"); r <- getOption("repos") | |
| # r["CRAN"] <- "http://my.local.cran" | |
| # options(defaultPackages = c(old, "MASS"), repos = r) | |
| #}) | |
| ## We set the cloud mirror, which is 'network-close' to everybody, as default | |
| local({ | |
| r <- getOption("repos") | |
| r["CRAN"] <- "https://cloud.r-project.org" | |
| options(repos = r) | |
| }) | |
| R User Profile: /home/werner/.Rprofile | |
| -------------------------------------------------- | |
| options(Ncpus = 6) | |
| message("*** Successfully loaded .Rprofile ***") | |
| R Site Environ: /usr/lib/R/etc/Renviron.site | |
| -------------------------------------------------- | |
| ## Emacs please make this -*- R -*- | |
| ## empty Renviron.site for R on Debian | |
| ## | |
| ## Copyright (C) 2008 - 2019 Dirk Eddelbuettel and GPL'ed | |
| ## | |
| ## see help(Startup) for documentation on ~/.Renviron and Renviron.site | |
| # ## Example ~/.Renviron on Unix | |
| # R_LIBS=~/R/library | |
| # PAGER=/usr/local/bin/less | |
| # ## Example .Renviron on Windows | |
| # R_LIBS=C:/R/library | |
| # MY_TCLTK="c:/Program Files/Tcl/bin" | |
| # ## Example of setting R_DEFAULT_PACKAGES (from R CMD check) | |
| # R_DEFAULT_PACKAGES='utils,grDevices,graphics,stats' | |
| # # this loads the packages in the order given, so they appear on | |
| # # the search path in reverse order. | |
| ## # We comment out this line in the default Renviron, you can re-enable it here | |
| ## # @R_PLATFORM@ can be eg x86_64-pc-linux-gnu, see /etc/R/Renviron for R_PLATFORM | |
| ## # @MAJ_MIN_VERSION@ is likely something like '3.4', see /etc/R/Renviron too | |
| ## # | |
| ## # Also note that you set this per-user via '%p' and '%v' for platform and version | |
| #R_LIBS_USER=${R_LIBS_USER-'~/R/@R_PLATFORM@-library/@MAJ_MIN_VERSION@'} | |
| ## edd May 2019 | |
| ## | |
| ## Debian (and its derivatives) impose a set of compiler flags to prevent some known | |
| ## security issues with compiled code. These flags then become defaults for R as well | |
| ## (see eg /etc/R/Makeconf) but nevertheless confuse R as warnings get triggers. Users, | |
| ## on the other hand, are often stumped about these. So with this variable we declare | |
| ## these options as known for the local checks on the machine this file is on. | |
| ## | |
| ## See Section 8 of the R Internals manual for many more options to customize tests. | |
| _R_CHECK_COMPILATION_FLAGS_KNOWN_='-Wformat -Werror=format-security -Wdate-time' | |
| R User Environ: /home/werner/.Renviron | |
| -------------------------------------------------- | |
| (File does not exist) | |
| R Temporary Directory | |
| -------------------------------------------------- | |
| /tmp/RtmpJinDKj | |
| Files in R Temporary Directory | |
| -------------------------------------------------- | |
| rs-graphics-dec80434-6c32-44fa-a73f-49adf160574f | |
| Log file: /home/werner/.rstudio-desktop/log/rdesktop.log | |
| -------------------------------------------------- | |
| (Not Found) | |
| Log file: /home/werner/.rstudio-desktop/log/rsession-werner.log | |
| -------------------------------------------------- | |
| (Not Found) | |
| User prefs: /home/werner/.config/rstudio/rstudio-prefs.json | |
| -------------------------------------------------- | |
| (Not Found) | |
| System prefs: /etc/xdg/xdg-ubuntu:/etc/xdg/rstudio/rstudio-prefs.json | |
| -------------------------------------------------- | |
| (Not Found) | |
| User state: /home/werner/.local/share/rstudio/rstudio-desktop.json | |
| -------------------------------------------------- | |
| { | |
| "context_id": "8CB895A", | |
| "theme": { | |
| "name": "Textmate (default)", | |
| "url": "theme/default/textmate.rstheme", | |
| "isDark": false | |
| }, | |
| "error_handler_type": "traceback" | |
| } |
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