Summary
I had a difficult time installing the units R package on the Partners ERIS servers.
I hope this post helps you to figure out how to work around the errors.
View pay-water-bill.py
| #!/usr/bin/env python3 | |
| # pay-water-bill.py | |
| # 2021-05-02 | |
| """ | |
| Pay your water bill in Baltimore City | |
| ===================================== | |
| Steps: |
View montage.py
| #!/usr/bin/env python | |
| """ | |
| montage.py | |
| 2020-12-23 | |
| Kamil Slowikowski | |
| Usage | |
| ----- | |
| Write montage.png from a list of PDF files, each panel 500px wide: |
View rsa-example.R
| #!/usr/bin/env Rscript | |
| # rsa-example.R | |
| # | |
| # Inspired by Alex Van de Sande | |
| # https://twitter.com/avsa/status/1318672796415819776 | |
| last_digit <- function(x) { | |
| x_char <- as.character(x) | |
| as.numeric(substr(x_char, nchar(x_char), nchar(x_char))) | |
| } |
slowkow
/ income.svg
Last active Oct 15, 2020
Trends in Income From 1975 to 2018 by Carter C. Price, Kathryn A. Edwards
View income.svg
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View writeMMgz.R
| #' @param x A sparse matrix from the Matrix package. | |
| #' @param file A filename that ends in ".gz". | |
| writeMMgz <- function(x, file) { | |
| mtype <- "real" | |
| if (is(x, "ngCMatrix")) { | |
| mtype <- "integer" | |
| } | |
| writeLines( | |
| c( | |
| sprintf("%%%%MatrixMarket matrix coordinate %s general", mtype), |
slowkow
/ needleman-wunsch.py
Created Feb 5, 2020
A simple version of the Needleman-Wunsch algorithm in Python.
View needleman-wunsch.py
| #!/usr/bin/env python | |
| """ | |
| The Needleman-Wunsch Algorithm | |
| ============================== | |
| This is a dynamic programming algorithm for finding the optimal alignment of | |
| two strings. | |
| Example | |
| ------- |
View read_cellranger.R
| # install.packages(c("Matrix", "rhdf5", "tidyverse")) | |
| library(Matrix) | |
| library(rhdf5) | |
| library(tidyverse) | |
| library(glue) | |
| my_h5_files <- Sys.glob( | |
| "path/to/cellranger-per-channel/output/*/filtered_feature_bc_matrix.h5" | |
| ) |
View pubmed-publications.html
| <!DOCTYPE html> | |
| <body> | |
| <!-- Copied directly from http://www.ephys.org/ by Damian J Williams --> | |
| <input placeholder="Kamil Slowikowski" name="name"/> | |
| <p id="demo"></p> | |
| <script> |
View README.md
Problem
We need to install a lot of R packages each time we upgrade to a new version of R.
Solution
- Before installing the new R, run
Rscript make_description.Rto write a list of all installed packages. - Install the new version of R.
- Use devtools to reinstall the packages.
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