Kamil Slowikowski slowkow

## montage.py
#!/usr/bin/env python
"""
montage.py
2020-12-23
Kamil Slowikowski

Usage
-----

Write montage.png from a list of PDF files, each panel 500px wide:

## rsa-example.R
#!/usr/bin/env Rscript
# rsa-example.R
#
# Inspired by Alex Van de Sande
# https://twitter.com/avsa/status/1318672796415819776

last_digit <- function(x) {
  x_char <- as.character(x)
  as.numeric(substr(x_char, nchar(x_char), nchar(x_char)))
}

## income.svg

      
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                slowkow
                / income.svg
            
            
              Last active Oct 15, 2020
            
              
                Trends in Income From 1975 to 2018 by Carter C. Price, Kathryn A. Edwards
              
          
      View income.svg
  
    
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## writeMMgz.R
#' @param x A sparse matrix from the Matrix package.
#' @param file A filename that ends in ".gz".
writeMMgz <- function(x, file) {
  mtype <- "real"
  if (is(x, "ngCMatrix")) {
    mtype <- "integer"
  }
  writeLines(
    c(
      sprintf("%%%%MatrixMarket matrix coordinate %s general", mtype),

## needleman-wunsch.py
#!/usr/bin/env python
"""
The Needleman-Wunsch Algorithm
==============================

This is a dynamic programming algorithm for finding the optimal alignment of
two strings.

Example
-------

## read_cellranger.R
# install.packages(c("Matrix", "rhdf5", "tidyverse"))
library(Matrix)
library(rhdf5)
library(tidyverse)
library(glue)

my_h5_files <- Sys.glob(
  "path/to/cellranger-per-channel/output/*/filtered_feature_bc_matrix.h5"
)

## install-units.md

      
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                / install-units.md
            
            
              Last active Oct 1, 2019
            
              
                Install the 'units' R package on Partners
              
          
      View install-units.md
  
      
    Summary
I had a difficult time installing the units R package on the Partners ERIS servers.
I hope this post helps you to figure out how to work around the errors.
Instructions

  
## pubmed-publications.html
<!DOCTYPE html>
<body>

<!-- Copied directly from http://www.ephys.org/ by Damian J Williams -->

<input placeholder="Kamil Slowikowski" name="name"/>

<p id="demo"></p>

<script>

## README.md

      
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                / README.md
            
            
              Last active May 15, 2019
            
              
                Generate a DESCRIPTION file with all of your installed packages
              
          
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    Problem
We need to install a lot of R packages each time we upgrade to a new version of R.
Solution

Before installing the new R, run Rscript make_description.R to write a list of all installed packages.
Install the new version of R.
Use devtools to reinstall the packages.


## out.pdf

      
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                / out.pdf
            
            
              Last active Feb 5, 2019
            
              
                Make a PCA plot in Bash with the OpenCPU API
              
          
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	#!/usr/bin/env python
	"""
	montage.py
	2020-12-23
	Kamil Slowikowski

	Usage
	-----

	Write montage.png from a list of PDF files, each panel 500px wide:
	#!/usr/bin/env Rscript
	# rsa-example.R
	#
	# Inspired by Alex Van de Sande
	# https://twitter.com/avsa/status/1318672796415819776

	last_digit <- function(x) {
	x_char <- as.character(x)
	as.numeric(substr(x_char, nchar(x_char), nchar(x_char)))
	}
	#' @param x A sparse matrix from the Matrix package.
	#' @param file A filename that ends in ".gz".
	writeMMgz <- function(x, file) {
	mtype <- "real"
	if (is(x, "ngCMatrix")) {
	mtype <- "integer"
	}
	writeLines(
	c(
	sprintf("%%%%MatrixMarket matrix coordinate %s general", mtype),
	#!/usr/bin/env python
	"""
	The Needleman-Wunsch Algorithm
	==============================

	This is a dynamic programming algorithm for finding the optimal alignment of
	two strings.

	Example
	-------
	# install.packages(c("Matrix", "rhdf5", "tidyverse"))
	library(Matrix)
	library(rhdf5)
	library(tidyverse)
	library(glue)

	my_h5_files <- Sys.glob(
	"path/to/cellranger-per-channel/output/*/filtered_feature_bc_matrix.h5"
	)
	<!DOCTYPE html>
	<body>

	<!-- Copied directly from http://www.ephys.org/ by Damian J Williams -->

	<input placeholder="Kamil Slowikowski" name="name"/>

	<p id="demo"></p>

	<script>