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homebrew build error for ITK 4.4.2 with python wrappings
Raw
gistfile1.txt
➜ ~ brew install https://raw.github.com/iMichka/homebrew-science/8614633a8927be14b7e00d48a75acb66af3fc83e/insighttoolkit.rb --with-python
######################################################################## 100.0%
==> Installing dependencies for insighttoolkit: vtk
==> Installing insighttoolkit dependency: vtk
==> Downloading http://www.vtk.org/files/release/6.0/vtk-6.0.0.tar.gz
######################################################################## 100.0%
==> cmake -DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/vtk/6.0.0 -DCMAKE_BUILD_TYPE=None -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DVTK_REQUIRED_OBJCXX_FLAGS='' -DVT
==> make
==> make install
==> Caveats
Even without the --with-qt option, you can display native VTK render windows
from python. Alternatively, you can integrate the RenderWindowInteractor
in PyQt, PySide, Tk or Wx at runtime. Read more:
import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx)
==> Summary
🍺 /usr/local/Cellar/vtk/6.0.0: 3235 files, 131M, built in 22.3 minutes
==> Installing insighttoolkit
==> Downloading http://download.sf.net/project/itk/itk/4.4/InsightToolkit-4.4.2.tar.gz
######################################################################## 100.0%
==> cmake -DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/insighttoolkit/4.4.2 -DCMAKE_BUILD_TYPE=None -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DBUILD_TESTING=OFF -DBUILD_SHARED_LIBS=ON .. -DBUILD_EXAMPLES=OFF -DModule_ITKVideoBridgeOpenCV=OFF -DITKV3_COMPATIBILITY:BOOL=OFF -DITK_WRAP_PYTHON=ON -DModule_ITKVtkGlue=ON -DCMAKE_C_FLAGS='-ansi' -DITK_USE_SYSTEM_GCCXML=OFF -DPYTHON_LIBRARY='/usr/local/opt/python/Frameworks/Python.framework/Versions/2.7/lib/python2.7/config/libpython2.7.dylib'
==> make install
/usr/local/Library/ENV/4.3/c++ -Wall -Wno-long-double -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wstrict-null-sentinel -bundle -Wl,-headerpad_max_install_names -o ../../../lib/_ITKImageFunctionPython.so CMakeFiles/ITKImageFunctionPython.dir/ITKImageFunctionPython.cpp.o CMakeFiles/ITKImageFunctionPython.dir/itkBSplineDecompositionImageFilterPython.cpp.o CMakeFiles/ITKImageFunctionPython.dir/itkBSplineInterpolateImageFunctionPython.cpp.o CMakeFiles/ITKImageFunctionPython.dir/itkBSplineResampleImageFunctionPython.cpp.o CMakeFiles/ITKImageFunctionPython.dir/itkImageFunctionBasePython.cpp.o CMakeFiles/ITKImageFunctionPython.dir/itkInterpolateImageFunctionPython.cpp.o CMakeFiles/ITKImageFunctionPython.dir/itkLinearInterpolateImageFunctionPython.cpp.o CMakeFiles/ITKImageFunctionPython.dir/itkNearestNeighborInterpolateImageFunctionPython.cpp.o -F/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.8.sdk/System/Library/Frameworks ../../../lib/libitkdouble-conversion-4.4.1.dylib ../../../lib/libitksys-4.4.1.dylib ../../../lib/libitkvnl_algo-4.4.1.dylib ../../../lib/libitkvnl-4.4.1.dylib ../../../lib/libitkv3p_netlib-4.4.1.dylib ../../../lib/libITKCommon-4.4.1.dylib ../../../lib/libitkNetlibSlatec-4.4.1.dylib ../../../lib/libITKStatistics-4.4.1.dylib ../../../lib/libITKIOImageBase-4.4.1.dylib ../../../lib/libITKMesh-4.4.1.dylib ../../../lib/libitkzlib-4.4.1.dylib ../../../lib/libITKMetaIO-4.4.1.dylib ../../../lib/libITKSpatialObjects-4.4.1.dylib ../../../lib/libITKPath-4.4.1.dylib ../../../lib/libITKLabelMap-4.4.1.dylib ../../../lib/libITKQuadEdgeMesh-4.4.1.dylib ../../../lib/libITKOptimizers-4.4.1.dylib ../../../lib/libITKPolynomials-4.4.1.dylib ../../../lib/libITKBiasCorrection-4.4.1.dylib ../../../lib/libITKBioCell-4.4.1.dylib ../../../lib/libITKDICOMParser-4.4.1.dylib ../../../lib/libITKEXPAT-4.4.1.dylib ../../../lib/libITKIOXML-4.4.1.dylib ../../../lib/libITKIOSpatialObjects-4.4.1.dylib ../../../lib/libITKFEM-4.4.1.dylib ../../../lib/libitkopenjpeg-4.4.1.dylib ../../../lib/libitkgdcmDICT-4.4.1.dylib ../../../lib/libitkgdcmMSFF-4.4.1.dylib ../../../lib/libITKznz-4.4.1.dylib ../../../lib/libITKniftiio-4.4.1.dylib ../../../lib/libITKgiftiio-4.4.1.dylib ../../../lib/libitkhdf5_cpp-4.4.1.dylib ../../../lib/libitkhdf5-4.4.1.dylib ../../../lib/libITKIOBMP-4.4.1.dylib ../../../lib/libITKIOBioRad-4.4.1.dylib ../../../lib/libITKIOCSV-4.4.1.dylib ../../../lib/libITKIOGDCM-4.4.1.dylib ../../../lib/libITKIOIPL-4.4.1.dylib ../../../lib/libITKIOGE-4.4.1.dylib ../../../lib/libITKIOGIPL-4.4.1.dylib ../../../lib/libITKIOHDF5-4.4.1.dylib ../../../lib/libitkjpeg-4.4.1.dylib ../../../lib/libITKIOJPEG-4.4.1.dylib ../../../lib/libitktiff-4.4.1.dylib ../../../lib/libITKIOTIFF-4.4.1.dylib ../../../lib/libITKIOLSM-4.4.1.dylib ../../../lib/libITKIOMesh-4.4.1.dylib ../../../lib/libITKIOMeta-4.4.1.dylib ../../../lib/libITKIONIFTI-4.4.1.dylib ../../../lib/libITKNrrdIO-4.4.1.dylib ../../../lib/libITKIONRRD-4.4.1.dylib ../../../lib/libitkpng-4.4.1.dylib ../../../lib/libITKIOPNG-4.4.1.dylib ../../../lib/libITKIOSiemens-4.4.1.dylib ../../../lib/libITKIOStimulate-4.4.1.dylib ../../../lib/libITKIOTransformBase-4.4.1.dylib ../../../lib/libITKIOTransformHDF5-4.4.1.dylib ../../../lib/libITKIOTransformInsightLegacy-4.4.1.dylib ../../../lib/libITKIOTransformMatlab-4.4.1.dylib ../../../lib/libITKIOVTK-4.4.1.dylib ../../../lib/libITKKLMRegionGrowing-4.4.1.dylib ../../../lib/libITKOptimizersv4-4.4.1.dylib ../../../lib/libITKVTK-4.4.1.dylib ../../../lib/libITKWatersheds-4.4.1.dylib ../../../lib/libITKReview-4.4.1.dylib ../../../lib/libITKVideoCore-4.4.1.dylib ../../../lib/libITKVideoIO-4.4.1.dylib ../../../lib/libITKVtkGlue-4.4.1.dylib /usr/local/opt/python/Frameworks/Python.framework/Versions/2.7/lib/python2.7/config/libpython2.7.dylib ../../../lib/libITKgiftiio-4.4.1.dylib ../../../lib/libITKLabelMap-4.4.1.dylib ../../../lib/libITKQuadEdgeMesh-4.4.1.dylib ../../../lib/libITKBiasCorrection-4.4.1.dylib ../../../lib/libITKPolynomials-4.4.1.dylib ../../../lib/libITKBioCell-4.4.1.dylib ../../../lib/libITKIOSpatialObjects-4.4.1.dylib ../../../lib/libITKIOXML-4.4.1.dylib ../../../lib/libITKFEM-4.4.1.dylib ../../../lib/libITKOptimizers-4.4.1.dylib ../../../lib/libITKIOBMP-4.4.1.dylib ../../../lib/libITKIOBioRad-4.4.1.dylib ../../../lib/libITKIOGDCM-4.4.1.dylib ../../../lib/libitkgdcmMSFF-4.4.1.dylib ../../../lib/libitkopenjpeg-4.4.1.dylib ../../../lib/libitkgdcmDICT-4.4.1.dylib ../../../lib/libitkgdcmIOD-4.4.1.dylib ../../../lib/libITKEXPAT-4.4.1.dylib ../../../lib/libitkgdcmDSED-4.4.1.dylib ../../../lib/libitkgdcmCommon-4.4.1.dylib ../../../lib/libITKIOGIPL-4.4.1.dylib ../../../lib/libITKIOJPEG-4.4.1.dylib ../../../lib/libITKIOTIFF-4.4.1.dylib ../../../lib/libitktiff-4.4.1.dylib ../../../lib/libitkjpeg-4.4.1.dylib ../../../lib/libITKIOMeta-4.4.1.dylib ../../../lib/libITKMetaIO-4.4.1.dylib ../../../lib/libITKIONIFTI-4.4.1.dylib ../../../lib/libITKniftiio-4.4.1.dylib ../../../lib/libITKznz-4.4.1.dylib ../../../lib/libITKIONRRD-4.4.1.dylib ../../../lib/libITKNrrdIO-4.4.1.dylib ../../../lib/libITKIOPNG-4.4.1.dylib ../../../lib/libitkpng-4.4.1.dylib ../../../lib/libITKIOSiemens-4.4.1.dylib ../../../lib/libITKIOGE-4.4.1.dylib ../../../lib/libITKIOIPL-4.4.1.dylib ../../../lib/libITKIOStimulate-4.4.1.dylib ../../../lib/libITKIOTransformHDF5-4.4.1.dylib ../../../lib/libitkhdf5_cpp-4.4.1.dylib ../../../lib/libitkhdf5-4.4.1.dylib ../../../lib/libitkzlib-4.4.1.dylib ../../../lib/libITKIOTransformInsightLegacy-4.4.1.dylib ../../../lib/libITKIOTransformMatlab-4.4.1.dylib ../../../lib/libITKIOTransformBase-4.4.1.dylib ../../../lib/libITKIOVTK-4.4.1.dylib ../../../lib/libITKKLMRegionGrowing-4.4.1.dylib ../../../lib/libITKWatersheds-4.4.1.dylib ../../../lib/libITKSpatialObjects-4.4.1.dylib ../../../lib/libITKMesh-4.4.1.dylib ../../../lib/libITKPath-4.4.1.dylib ../../../lib/libITKStatistics-4.4.1.dylib ../../../lib/libitkNetlibSlatec-4.4.1.dylib ../../../lib/libITKIOImageBase-4.4.1.dylib ../../../lib/libITKVideoCore-4.4.1.dylib ../../../lib/libITKVTK-4.4.1.dylib ../../../lib/libITKCommon-4.4.1.dylib ../../../lib/libitkdouble-conversion-4.4.1.dylib ../../../lib/libitksys-4.4.1.dylib ../../../lib/libITKVNLInstantiation-4.4.1.dylib ../../../lib/libitkvnl_algo-4.4.1.dylib ../../../lib/libitkv3p_lsqr-4.4.1.dylib ../../../lib/libitkvnl-4.4.1.dylib ../../../lib/libitkvcl-4.4.1.dylib ../../../lib/libitkv3p_netlib-4.4.1.dylib /usr/local/lib/libvtkChartsCore-6.0.1.dylib /usr/local/lib/libvtkCommonColor-6.0.1.dylib /usr/local/lib/libvtkDomainsChemistry-6.0.1.dylib /usr/local/lib/libvtkFiltersFlowPaths-6.0.1.dylib /usr/local/lib/libvtkFiltersGeneric-6.0.1.dylib /usr/local/lib/libvtkFiltersHyperTree-6.0.1.dylib /usr/local/lib/libvtkFiltersParallelImaging-6.0.1.dylib /usr/local/lib/libvtkFiltersProgrammable-6.0.1.dylib /usr/local/lib/libvtkFiltersSelection-6.0.1.dylib /usr/local/lib/libvtkFiltersTexture-6.0.1.dylib /usr/local/lib/libvtkFiltersVerdict-6.0.1.dylib /usr/local/lib/libvtkverdict-6.0.1.dylib /usr/local/lib/libvtkImagingMath-6.0.1.dylib /usr/local/lib/libvtkImagingMorphological-6.0.1.dylib /usr/local/lib/libvtkImagingStatistics-6.0.1.dylib /usr/local/lib/libvtkImagingStencil-6.0.1.dylib /usr/local/lib/libvtkInteractionImage-6.0.1.dylib /usr/local/lib/libvtkIOAMR-6.0.1.dylib /usr/local/lib/libvtkIOEnSight-6.0.1.dylib /usr/local/lib/libvtkIOExodus-6.0.1.dylib /usr/local/lib/libvtkIOExport-6.0.1.dylib /usr/local/lib/libvtkRenderingGL2PS-6.0.1.dylib /usr/local/lib/libvtkgl2ps-6.0.1.dylib /usr/local/lib/libvtkIOImport-6.0.1.dylib /usr/local/lib/libvtkIOInfovis-6.0.1.dylib /usr/local/lib/libvtklibxml2-6.0.1.dylib -ldl /usr/local/lib/libvtkIOLSDyna-6.0.1.dylib /usr/local/lib/libvtkIOMINC-6.0.1.dylib /usr/local/lib/libvtkIOMovie-6.0.1.dylib /usr/local/lib/libvtkoggtheora-6.0.1.dylib /usr/local/lib/libvtkIOParallel-6.0.1.dylib /usr/local/lib/libvtkexoIIc-6.0.1.dylib /usr/local/lib/libvtkFiltersParallel-6.0.1.dylib /usr/local/lib/libvtkIONetCDF-6.0.1.dylib /usr/local/lib/libvtkNetCDF_cxx-6.0.1.dylib /usr/local/lib/libvtkNetCDF-6.0.1.dylib /usr/local/lib/libvtkhdf5_hl-6.0.1.dylib /usr/local/lib/libvtkhdf5-6.0.1.dylib /usr/local/lib/libvtkIOPLY-6.0.1.dylib /usr/local/lib/libvtkIOSQL-6.0.1.dylib /usr/local/lib/libvtksqlite-6.0.1.dylib /usr/local/lib/libvtkIOVideo-6.0.1.dylib /usr/local/lib/libvtkRenderingFreeTypeOpenGL-6.0.1.dylib /usr/local/lib/libvtkRenderingHybridOpenGL-6.0.1.dylib /usr/local/lib/libvtkRenderingImage-6.0.1.dylib /usr/local/lib/libvtkRenderingLOD-6.0.1.dylib /usr/local/lib/libvtkRenderingVolumeAMR-6.0.1.dylib /usr/local/lib/libvtkFiltersAMR-6.0.1.dylib /usr/local/lib/libvtkParallelCore-6.0.1.dylib /usr/local/lib/libvtkIOLegacy-6.0.1.dylib /usr/local/lib/libvtkRenderingVolumeOpenGL-6.0.1.dylib /usr/local/lib/libvtkViewsContext2D-6.0.1.dylib /usr/local/lib/libvtkViewsGeovis-6.0.1.dylib /usr/local/lib/libvtkGeovisCore-6.0.1.dylib /usr/local/lib/libvtkIOXML-6.0.1.dylib /usr/local/lib/libvtkIOGeometry-6.0.1.dylib /usr/local/lib/libvtkjsoncpp-6.0.1.dylib /usr/local/lib/libvtkproj4-6.0.1.dylib -lm /usr/local/lib/libvtkViewsInfovis-6.0.1.dylib /usr/local/lib/libvtkRenderingContext2D-6.0.1.dylib /usr/local/lib/libvtkRenderingOpenGL-6.0.1.dylib -framework AGL -framework ApplicationServices -framework IOKit -framework Cocoa /usr/local/lib/libvtkFiltersImaging-6.0.1.dylib /usr/local/lib/libvtkInfovisLayout-6.0.1.dylib /usr/local/lib/libvtkInfovisCore-6.0.1.dylib /usr/local/lib/libvtkViewsCore-6.0.1.dylib /usr/local/lib/libvtkInteractionWidgets-6.0.1.dylib /usr/local/lib/libvtkImagingHybrid-6.0.1.dylib /usr/local/lib/libvtkFiltersHybrid-6.0.1.dylib /usr/local/lib/libvtkImagingGeneral-6.0.1.dylib /usr/local/lib/libvtkImagingSources-6.0.1.dylib /usr/local/lib/libvtkFiltersModeling-6.0.1.dylib /usr/local/lib/libvtkInteractionStyle-6.0.1.dylib /usr/local/lib/libvtkRenderingAnnotation-6.0.1.dylib /usr/local/lib/libvtkImagingColor-6.0.1.dylib /usr/local/lib/libvtkRenderingVolume-6.0.1.dylib /usr/local/lib/libvtkRenderingLabel-6.0.1.dylib /usr/local/lib/libvtkRenderingFreeType-6.0.1.dylib /usr/local/lib/libvtkRenderingCore-6.0.1.dylib /usr/local/lib/libvtkFiltersExtraction-6.0.1.dylib /usr/local/lib/libvtkFiltersStatistics-6.0.1.dylib /usr/local/lib/libvtkalglib-6.0.1.dylib /usr/local/lib/libvtkImagingFourier-6.0.1.dylib /usr/local/lib/libvtkImagingCore-6.0.1.dylib /usr/local/lib/libvtkFiltersGeometry-6.0.1.dylib /usr/local/lib/libvtkFiltersSources-6.0.1.dylib /usr/local/lib/libvtkFiltersGeneral-6.0.1.dylib /usr/local/lib/libvtkFiltersCore-6.0.1.dylib /usr/local/lib/libvtkCommonComputationalGeometry-6.0.1.dylib /usr/local/lib/libvtkIOImage-6.0.1.dylib /usr/local/lib/libvtkDICOMParser-6.0.1.dylib /usr/local/lib/libvtkmetaio-6.0.1.dylib /usr/local/lib/libvtkpng-6.0.1.dylib /usr/local/lib/libvtktiff-6.0.1.dylib -lm /usr/local/lib/libvtkjpeg-6.0.1.dylib /usr/local/lib/libvtkIOXMLParser-6.0.1.dylib /usr/local/lib/libvtkIOCore-6.0.1.dylib /usr/local/lib/libvtkCommonExecutionModel-6.0.1.dylib /usr/local/lib/libvtkCommonDataModel-6.0.1.dylib /usr/local/lib/libvtkCommonMisc-6.0.1.dylib /usr/local/lib/libvtkCommonSystem-6.0.1.dylib /usr/local/lib/libvtkCommonTransforms-6.0.1.dylib /usr/local/lib/libvtkCommonMath-6.0.1.dylib /usr/local/lib/libvtkexpat-6.0.1.dylib /usr/local/lib/libvtkftgl-6.0.1.dylib /usr/local/lib/libvtkfreetype-6.0.1.dylib /usr/local/lib/libvtkzlib-6.0.1.dylib -framework ApplicationServices -framework CoreServices -framework OpenGL /usr/local/lib/libvtkWrappingPython27Core-6.0.1.dylib /usr/local/opt/python/Frameworks/Python.framework/Versions/2.7/lib/python2.7/config/libpython2.7.dylib /usr/local/lib/libvtkCommonCore-6.0.1.dylib /usr/local/lib/libvtksys-6.0.1.dylib /usr/local/lib/libvtkWrappingTools-6.0.a
brew: superenv removed: -Wall -Wno-long-double -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wstrict-null-sentinel
/usr/local/Cellar/cmake/2.8.11.2/bin/cmake -E cmake_progress_report /tmp/-cw2V/InsightToolkit-4.4.2/itk-build/CMakeFiles
[ 65%] Built target ITKImageFunctionPython
make: *** [all] Error 2
READ THIS: https://github.com/mxcl/homebrew/wiki/troubleshooting
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