smehringer

Building

    std::vector<std::vector<std::vector<seqan3::dna4>>> seqs{{"AAAGGGGGGC"_dna4}, {"TTTTTT"_dna4}};

    seqan3::hibf_config config
    {
        .input = seqs,
        .kmer_transformation = seqan3::views::kmer_hash(seqan3::ungapped{2u})
 };

smehringer

// Standard example
===================

// current implementation:
seqan3::sequence_file_input in{"x.fasta"};

for (auto && rec : in)
    seqan3::debug_stream << rec.sequence();

// -------------------------------------------------------------------------------------------------------------------------

smehringer

import os
from mod_python import apache

#   -  make sure file in subfolder 'resources/versions.txt' exists
#   -  URI passed to script is formated like: check/RESOURCENAME
#   -  RESOURCENAME is formated as either: 
#      * 'SeqAn_Linux_64_Alf_2.0.0' (Argument Parser in Seqan 2) 
#      * 'SeqAn3_Linux_64_Raptor_2.0.0' (Argument Parser in Seqan 3) 
#      * 'SeqAn-Sharg_Linux_64_Alf_2.0.0' (Stand alone Sharg Parser) 
#   The toolname of a request is extracted and the returned by the server.

smehringer

// -----------------------------------------------------------------------------------------------------------------------
// Possible Solutions
// -----------------------------------------------------------------------------------------------------------------------

// Solution 1
// -----------------------------------------------------------------------------------------------------------------------
// We document how people can customize their type and wrap simple types (or maybe we supply those wrappers?)
struct option_wrapper
{
    int value{-1};

smehringer

# all reviewers
curl -i -H "Accept: application/vnd.github.v3+json" -X GET https://api.github.com/repos/seqan/seqan3/pulls | awk 'BEGIN{REQ="false"}{ if(REQ=="next"){print $0; REQ="false";};if (REQ == "true"){REQ="next";}; if ($0 == "    \"requested_reviewers\": [") {REQ="true"}; }' | grep login | cut -d '"' -f 4 | sort | uniq -c


# stats
curl -i -H "Accept: application/vnd.github.v3+json" -X GET "https://api.github.com/repos/seqan/seqan3/pulls?state=closed&per_page=100&page=9" >> /tmp/curl.response

grep -E '^\s\s\s\s\".*_at' /tmp/curl.response | grep -v updated | grep -v closed | grep -v title | cut -d '"' -f 2,4 | awk -F'"' 'BEGIN{ OFS="\t" }{ if ($1=="merged_at"){ print CREATED,$2;}; if ($1=="created_at"){CREATED=$2}; }' > /tmp/curl.response.stats

# in R: