- 3.5_build_log は
llvmlite==0.31.0
の依存を追加 (patch: git_diff_4f1b4e3f95.patch) - 3.7_build_log は
llvmlite==0.31.0
の依存を追加していない (master/HEAD)
Last active
April 21, 2020 08:30
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Sending build context to Docker daemon 5.12kB | |
Step 1/9 : FROM ubuntu:18.04 | |
---> 4e5021d210f6 | |
Step 2/9 : RUN apt-get update && apt-get install -y --no-install-recommends bc bzip2 ca-certificates curl git less libgdal-dev libssl-dev libffi-dev libncurses-dev libgl1 jq nfs-common parallel python-dev python-pip python-wheel python-setuptools tree unzip vim wget xterm cmake build-essential && apt-get clean && rm -rf /var/lib/apt/lists/* | |
---> Using cache | |
---> 47bbcbeb2fe5 | |
Step 3/9 : SHELL ["/bin/bash", "-c"] | |
---> Using cache | |
---> 2c3bbd22b5fe | |
Step 4/9 : ENV PATH /opt/conda/bin:$PATH | |
---> Using cache | |
---> 5a26b16e15b7 | |
Step 5/9 : RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh -O ~/miniconda.sh && /bin/bash ~/miniconda.sh -b -p /opt/conda && rm ~/miniconda.sh && /opt/conda/bin/conda clean -tipsy && ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && echo "conda activate base" >> ~/.bashrc | |
---> Using cache | |
---> 202a1495fb3e | |
Step 6/9 : WORKDIR /root/ | |
---> Using cache | |
---> 2bb8250c5fa1 | |
Step 7/9 : RUN conda create -n test python=3.5 | |
---> Using cache | |
---> bba3eedc5030 | |
Step 8/9 : RUN source activate test && git clone https://github.com/smly/optuna.git && cd optuna && apt-get update && apt-get -y install openmpi-bin libopenmpi-dev && python -m pip install --upgrade pip && pip install --progress-bar off -U setuptools && python setup.py sdist && pip install --progress-bar off $(ls dist/*.tar.gz) && python -c 'import optuna' && pip install --progress-bar off $(ls dist/*.tar.gz)[example] -f https://download.pytorch.org/whl/torch_stable.html | |
---> Running in 9f2764c4cb9d | |
Cloning into 'optuna'... | |
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Fetched 17.8 MB in 22s (813 kB/s) | |
Reading package lists... | |
Reading package lists... | |
Building dependency tree... | |
Reading state information... | |
The following additional packages will be installed: | |
ibverbs-providers libfabric1 libhwloc-dev libhwloc-plugins libhwloc5 | |
libibverbs-dev libibverbs1 libnl-3-200 libnl-route-3-200 libnuma-dev | |
libnuma1 libopenmpi2 libpsm-infinipath1 librdmacm1 ocl-icd-libopencl1 | |
openmpi-common | |
Suggested packages: | |
libhwloc-contrib-plugins openmpi-doc opencl-icd gfortran | |
The following NEW packages will be installed: | |
ibverbs-providers libfabric1 libhwloc-dev libhwloc-plugins libhwloc5 | |
libibverbs-dev libibverbs1 libnl-3-200 libnl-route-3-200 libnuma-dev | |
libnuma1 libopenmpi-dev libopenmpi2 libpsm-infinipath1 librdmacm1 | |
ocl-icd-libopencl1 openmpi-bin openmpi-common | |
0 upgraded, 18 newly installed, 0 to remove and 8 not upgraded. | |
Need to get 4617 kB of archives. | |
After this operation, 18.4 MB of additional disk space will be used. | |
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Get:2 http://archive.ubuntu.com/ubuntu bionic/main amd64 libnl-3-200 amd64 3.2.29-0ubuntu3 [52.8 kB] | |
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Get:5 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 ibverbs-providers amd64 17.1-1ubuntu0.2 [160 kB] | |
Get:6 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-5 [174 kB] | |
Get:7 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 librdmacm1 amd64 17.1-1ubuntu0.2 [56.1 kB] | |
Get:8 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libfabric1 amd64 1.5.3-1 [302 kB] | |
Get:9 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libhwloc5 amd64 1.11.9-1 [105 kB] | |
Get:10 http://archive.ubuntu.com/ubuntu bionic/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] | |
Get:11 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libhwloc-plugins amd64 1.11.9-1 [12.5 kB] | |
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Get:14 http://archive.ubuntu.com/ubuntu bionic/universe amd64 openmpi-bin amd64 2.1.1-8 [88.2 kB] | |
Get:15 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libnuma-dev amd64 2.0.11-2.1ubuntu0.1 [32.3 kB] | |
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Get:17 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libibverbs-dev amd64 17.1-1ubuntu0.2 [103 kB] | |
Get:18 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libopenmpi-dev amd64 2.1.1-8 [925 kB] | |
debconf: delaying package configuration, since apt-utils is not installed | |
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Selecting previously unselected package libnuma1:amd64. | |
(Reading database ... 36820 files and directories currently installed.) | |
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Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... | |
update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode | |
Setting up openmpi-common (2.1.1-8) ... | |
Setting up libnuma-dev:amd64 (2.0.11-2.1ubuntu0.1) ... | |
Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... | |
Setting up libnl-3-200:amd64 (3.2.29-0ubuntu3) ... | |
Setting up libhwloc-dev:amd64 (1.11.9-1) ... | |
Setting up libnl-route-3-200:amd64 (3.2.29-0ubuntu3) ... | |
Setting up libhwloc-plugins (1.11.9-1) ... | |
Setting up libibverbs1:amd64 (17.1-1ubuntu0.2) ... | |
Setting up librdmacm1:amd64 (17.1-1ubuntu0.2) ... | |
Setting up ibverbs-providers:amd64 (17.1-1ubuntu0.2) ... | |
Setting up libibverbs-dev:amd64 (17.1-1ubuntu0.2) ... | |
Setting up libfabric1 (1.5.3-1) ... | |
Setting up libopenmpi2:amd64 (2.1.1-8) ... | |
Setting up libopenmpi-dev (2.1.1-8) ... | |
update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/mpi (mpi) in auto mode | |
update-alternatives: warning: skip creation of /usr/share/man/man1/mpicc.1.gz because associated file /usr/share/man/man1/mpicc.openmpi.1.gz (of link group mpi) doesn't exist | |
update-alternatives: warning: skip creation of /usr/share/man/man1/mpic++.1.gz because associated file /usr/share/man/man1/mpic++.openmpi.1.gz (of link group mpi) doesn't exist | |
update-alternatives: warning: skip creation of /usr/share/man/man1/mpicxx.1.gz because associated file /usr/share/man/man1/mpicxx.openmpi.1.gz (of link group mpi) doesn't exist | |
update-alternatives: warning: skip creation of /usr/share/man/man1/mpiCC.1.gz because associated file /usr/share/man/man1/mpiCC.openmpi.1.gz (of link group mpi) doesn't exist | |
update-alternatives: warning: skip creation of /usr/share/man/man1/mpif77.1.gz because associated file /usr/share/man/man1/mpif77.openmpi.1.gz (of link group mpi) doesn't exist | |
update-alternatives: warning: skip creation of /usr/share/man/man1/mpif90.1.gz because associated file /usr/share/man/man1/mpif90.openmpi.1.gz (of link group mpi) doesn't exist | |
update-alternatives: warning: skip creation of /usr/share/man/man1/mpifort.1.gz because associated file /usr/share/man/man1/mpifort.openmpi.1.gz (of link group mpi) doesn't exist | |
Setting up openmpi-bin (2.1.1-8) ... | |
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode | |
update-alternatives: warning: skip creation of /usr/share/man/man1/mpirun.1.gz because associated file /usr/share/man/man1/mpirun.openmpi.1.gz (of link group mpirun) doesn't exist | |
update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist | |
Processing triggers for libc-bin (2.27-3ubuntu1) ... | |
Collecting pip | |
Downloading https://files.pythonhosted.org/packages/54/0c/d01aa759fdc501a58f431eb594a17495f15b88da142ce14b5845662c13f3/pip-20.0.2-py2.py3-none-any.whl (1.4MB) | |
Installing collected packages: pip | |
Found existing installation: pip 10.0.1 | |
Uninstalling pip-10.0.1: | |
Successfully uninstalled pip-10.0.1 | |
Successfully installed pip-20.0.2 | |
You are using pip version 20.0.2, however version 20.1b1 is available. | |
You should consider upgrading via the 'pip install --upgrade pip' command. | |
Collecting setuptools | |
Downloading setuptools-46.1.3-py3-none-any.whl (582 kB) | |
Installing collected packages: setuptools | |
Attempting uninstall: setuptools | |
Found existing installation: setuptools 40.2.0 | |
Uninstalling setuptools-40.2.0: | |
Successfully uninstalled setuptools-40.2.0 | |
Successfully installed setuptools-46.1.3 | |
running sdist | |
running egg_info | |
creating optuna.egg-info | |
writing optuna.egg-info/PKG-INFO | |
writing top-level names to optuna.egg-info/top_level.txt | |
writing requirements to optuna.egg-info/requires.txt | |
writing entry points to optuna.egg-info/entry_points.txt | |
writing dependency_links to optuna.egg-info/dependency_links.txt | |
writing manifest file 'optuna.egg-info/SOURCES.txt' | |
reading manifest file 'optuna.egg-info/SOURCES.txt' | |
reading manifest template 'MANIFEST.in' | |
writing manifest file 'optuna.egg-info/SOURCES.txt' | |
running check | |
creating optuna-1.3.0 | |
creating optuna-1.3.0/optuna | |
creating optuna-1.3.0/optuna.egg-info | |
creating optuna-1.3.0/optuna/importance | |
creating optuna-1.3.0/optuna/integration | |
creating optuna-1.3.0/optuna/integration/lightgbm_tuner | |
creating optuna-1.3.0/optuna/pruners | |
creating optuna-1.3.0/optuna/samplers | |
creating optuna-1.3.0/optuna/samplers/tpe | |
creating optuna-1.3.0/optuna/storages | |
creating optuna-1.3.0/optuna/storages/rdb | |
creating optuna-1.3.0/optuna/storages/rdb/alembic | |
creating optuna-1.3.0/optuna/storages/rdb/alembic/versions | |
creating optuna-1.3.0/optuna/testing | |
creating optuna-1.3.0/optuna/visualization | |
creating optuna-1.3.0/tests | |
creating optuna-1.3.0/tests/integration_tests | |
creating optuna-1.3.0/tests/integration_tests/lightgbm_tuner_tests | |
creating optuna-1.3.0/tests/pruners_tests | |
creating optuna-1.3.0/tests/samplers_tests | |
creating optuna-1.3.0/tests/samplers_tests/tpe_tests | |
creating optuna-1.3.0/tests/storages_tests | |
creating optuna-1.3.0/tests/storages_tests/rdb_tests | |
creating optuna-1.3.0/tests/visualization_tests | |
copying files to optuna-1.3.0... | |
copying LICENSE -> optuna-1.3.0 | |
copying MANIFEST.in -> optuna-1.3.0 | |
copying README.md -> optuna-1.3.0 | |
copying setup.cfg -> optuna-1.3.0 | |
copying setup.py -> optuna-1.3.0 | |
copying optuna/__init__.py -> optuna-1.3.0/optuna | |
copying optuna/_experimental.py -> optuna-1.3.0/optuna | |
copying optuna/_study_direction.py -> optuna-1.3.0/optuna | |
copying optuna/_study_summary.py -> optuna-1.3.0/optuna | |
copying optuna/cli.py -> optuna-1.3.0/optuna | |
copying optuna/dashboard.py -> optuna-1.3.0/optuna | |
copying optuna/distributions.py -> optuna-1.3.0/optuna | |
copying optuna/exceptions.py -> optuna-1.3.0/optuna | |
copying optuna/logging.py -> optuna-1.3.0/optuna | |
copying optuna/progress_bar.py -> optuna-1.3.0/optuna | |
copying optuna/structs.py -> optuna-1.3.0/optuna | |
copying optuna/study.py -> optuna-1.3.0/optuna | |
copying optuna/trial.py -> optuna-1.3.0/optuna | |
copying optuna/type_checking.py -> optuna-1.3.0/optuna | |
copying optuna/version.py -> optuna-1.3.0/optuna | |
copying optuna.egg-info/PKG-INFO -> optuna-1.3.0/optuna.egg-info | |
copying optuna.egg-info/SOURCES.txt -> optuna-1.3.0/optuna.egg-info | |
copying optuna.egg-info/dependency_links.txt -> optuna-1.3.0/optuna.egg-info | |
copying optuna.egg-info/entry_points.txt -> optuna-1.3.0/optuna.egg-info | |
copying optuna.egg-info/requires.txt -> optuna-1.3.0/optuna.egg-info | |
copying optuna.egg-info/top_level.txt -> optuna-1.3.0/optuna.egg-info | |
copying optuna/importance/__init__.py -> optuna-1.3.0/optuna/importance | |
copying optuna/importance/_base.py -> optuna-1.3.0/optuna/importance | |
copying optuna/importance/_fanova.py -> optuna-1.3.0/optuna/importance | |
copying optuna/integration/__init__.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/allennlp.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/chainer.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/chainermn.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/cma.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/fastai.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/keras.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/lightgbm.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/mlflow.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/mxnet.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/pytorch_ignite.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/pytorch_lightning.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/sklearn.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/skopt.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/tensorflow.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/tfkeras.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/xgboost.py -> optuna-1.3.0/optuna/integration | |
copying optuna/integration/lightgbm_tuner/__init__.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
copying optuna/integration/lightgbm_tuner/alias.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
copying optuna/integration/lightgbm_tuner/optimize.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
copying optuna/integration/lightgbm_tuner/sklearn.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
copying optuna/pruners/__init__.py -> optuna-1.3.0/optuna/pruners | |
copying optuna/pruners/base.py -> optuna-1.3.0/optuna/pruners | |
copying optuna/pruners/hyperband.py -> optuna-1.3.0/optuna/pruners | |
copying optuna/pruners/median.py -> optuna-1.3.0/optuna/pruners | |
copying optuna/pruners/nop.py -> optuna-1.3.0/optuna/pruners | |
copying optuna/pruners/percentile.py -> optuna-1.3.0/optuna/pruners | |
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copying tests/pruners_tests/test_percentile.py -> optuna-1.3.0/tests/pruners_tests | |
copying tests/pruners_tests/test_successive_halving.py -> optuna-1.3.0/tests/pruners_tests | |
copying tests/pruners_tests/test_threshold.py -> optuna-1.3.0/tests/pruners_tests | |
copying tests/samplers_tests/__init__.py -> optuna-1.3.0/tests/samplers_tests | |
copying tests/samplers_tests/test_cmaes.py -> optuna-1.3.0/tests/samplers_tests | |
copying tests/samplers_tests/test_grid.py -> optuna-1.3.0/tests/samplers_tests | |
copying tests/samplers_tests/test_samplers.py -> optuna-1.3.0/tests/samplers_tests | |
copying tests/samplers_tests/tpe_tests/__init__.py -> optuna-1.3.0/tests/samplers_tests/tpe_tests | |
copying tests/samplers_tests/tpe_tests/test_parzen_estimator.py -> optuna-1.3.0/tests/samplers_tests/tpe_tests | |
copying tests/samplers_tests/tpe_tests/test_sampler.py -> optuna-1.3.0/tests/samplers_tests/tpe_tests | |
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copying tests/storages_tests/test_storages.py -> optuna-1.3.0/tests/storages_tests | |
copying tests/storages_tests/rdb_tests/__init__.py -> optuna-1.3.0/tests/storages_tests/rdb_tests | |
copying tests/storages_tests/rdb_tests/test_models.py -> optuna-1.3.0/tests/storages_tests/rdb_tests | |
copying tests/storages_tests/rdb_tests/test_storage.py -> optuna-1.3.0/tests/storages_tests/rdb_tests | |
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copying tests/visualization_tests/test_intermediate_plot.py -> optuna-1.3.0/tests/visualization_tests | |
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Writing optuna-1.3.0/setup.cfg | |
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Building wheels for collected packages: optuna, alembic, sqlalchemy, PyYAML, PrettyTable, pyperclip | |
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Successfully built optuna alembic sqlalchemy PyYAML PrettyTable pyperclip | |
Installing collected packages: MarkupSafe, Mako, sqlalchemy, python-editor, six, python-dateutil, alembic, pyparsing, pbr, stevedore, PyYAML, PrettyTable, pyperclip, wcwidth, cmd2, cliff, numpy, cmaes, colorlog, joblib, scipy, tqdm, optuna | |
Successfully installed Mako-1.1.2 MarkupSafe-1.1.1 PrettyTable-0.7.2 PyYAML-5.3.1 alembic-1.4.2 cliff-3.1.0 cmaes-0.4.0 cmd2-0.8.9 colorlog-4.1.0 joblib-0.14.1 numpy-1.18.3 optuna-1.3.0 pbr-5.4.5 pyparsing-2.4.7 pyperclip-1.8.0 python-dateutil-2.8.1 python-editor-1.0.4 scipy-1.4.1 six-1.14.0 sqlalchemy-1.3.16 stevedore-1.32.0 tqdm-4.45.0 wcwidth-0.1.9 | |
Looking in links: https://download.pytorch.org/whl/torch_stable.html | |
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Building wheels for collected packages: optuna, chainer, mpi4py, pytorch-lightning, simplejson, databricks-cli, prometheus-flask-exporter, querystring-parser, toolz, test-tube, gast, wrapt, absl-py, termcolor, promise, future, dill, retrying, prometheus-client, tornado, locket, psutil, googleapis-common-protos, pyrsistent, backcall | |
Building wheel for optuna (setup.py): started | |
Building wheel for optuna (setup.py): finished with status 'done' | |
Created wheel for optuna: filename=optuna-1.3.0-py3-none-any.whl size=236241 sha256=d73fdaa3acadd06182460327c99db639472ccf473a2b21c82cdbd454f8525258 | |
Stored in directory: /root/.cache/pip/wheels/c7/bd/45/1cb2bc8913bc5777a47507a4844de1f87f82a5fc4cb9de0577 | |
Building wheel for chainer (setup.py): started | |
Building wheel for chainer (setup.py): finished with status 'done' | |
Created wheel for chainer: filename=chainer-7.2.0-py3-none-any.whl size=966256 sha256=50122285e6438182170e23d0ea3099f3595cf044ac75f27e19beb5cd3835adb7 | |
Stored in directory: /root/.cache/pip/wheels/fc/73/50/f07ed7493023e67bd047083b322a0f7662f8e440513ed6f290 | |
Building wheel for mpi4py (setup.py): started | |
Building wheel for mpi4py (setup.py): finished with status 'error' | |
ERROR: Command errored out with exit status 1: | |
command: /opt/conda/envs/test/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-oqulxw06 | |
cwd: /tmp/pip-install-c6xrtgj5/mpi4py/ | |
Complete output (354 lines): | |
running bdist_wheel | |
running build | |
running build_src | |
running build_py | |
creating build | |
creating build/lib.linux-x86_64-3.5 | |
creating build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.5/mpi4py | |
creating build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
creating build/lib.linux-x86_64-3.5/mpi4py/include | |
creating build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
running build_clib | |
MPI configuration: [mpi] from 'mpi.cfg' | |
MPI C compiler: /usr/bin/mpicc | |
MPI C++ compiler: /usr/bin/mpicxx | |
MPI F compiler: /usr/bin/mpifort | |
MPI F90 compiler: /usr/bin/mpif90 | |
MPI F77 compiler: /usr/bin/mpif77 | |
checking for library 'lmpe' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -llmpe -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -llmpe | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
building 'mpe' dylib library | |
creating build/temp.linux-x86_64-3.5 | |
creating build/temp.linux-x86_64-3.5/src | |
creating build/temp.linux-x86_64-3.5/src/lib-pmpi | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/mpe.o | |
creating build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi | |
/usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libmpe.so | |
checking for library 'vt-mpi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-mpi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-mpi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
checking for library 'vt.mpi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.mpi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.mpi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
building 'vt' dylib library | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt.o | |
/usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt.so | |
checking for library 'vt-mpi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-mpi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-mpi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
checking for library 'vt.mpi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.mpi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.mpi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
building 'vt-mpi' dylib library | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-mpi.o | |
/usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt-mpi.so | |
checking for library 'vt-hyb' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-hyb -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-hyb | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
checking for library 'vt.ompi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.ompi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.ompi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
building 'vt-hyb' dylib library | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-hyb.o | |
/usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt-hyb.so | |
running build_ext | |
MPI configuration: [mpi] from 'mpi.cfg' | |
MPI C compiler: /usr/bin/mpicc | |
MPI C++ compiler: /usr/bin/mpicxx | |
MPI F compiler: /usr/bin/mpifort | |
MPI F90 compiler: /usr/bin/mpif90 | |
MPI F77 compiler: /usr/bin/mpif77 | |
checking for dlopen() availability ... | |
checking for header 'dlfcn.h' ... | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
success! | |
removing: _configtest.c _configtest.o | |
success! | |
checking for library 'dl' ... | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o _configtest | |
success! | |
removing: _configtest.c _configtest.o _configtest | |
checking for function 'dlopen' ... | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o _configtest | |
success! | |
removing: _configtest.c _configtest.o _configtest | |
building 'mpi4py.dl' extension | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/opt/conda/envs/test/include/python3.5m -c src/dynload.c -o build/temp.linux-x86_64-3.5/src/dynload.o | |
gcc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed build/temp.linux-x86_64-3.5/src/dynload.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o build/lib.linux-x86_64-3.5/mpi4py/dl.cpython-35m-x86_64-linux-gnu.so | |
checking for MPI compile and link ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
success! | |
removing: _configtest.c _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: warning: libopen-rte.so.20, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: warning: libopen-pal.so.20, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: warning: librt.so.1, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: warning: libm.so.6, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: warning: libhwloc.so.5, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_components_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_sort' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_get_topology' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_get_element_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_namelist_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_dump' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_install_dirs' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_ptr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_rand' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_alloc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_obj_by_depth' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_raw' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_strncpy' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_free' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_local_arch' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_item_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_backtrace_print' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_collect_all_data' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_ptr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_register' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_register_framework_params' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_iszero' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_cset2mapstr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_local_set' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_isincluded' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_dump_data_flags' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_topology' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_pack' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_stream_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_out' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_base_exchange' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_allocator_base_framework' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_join' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_base_async_modex' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_set_element_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_reset' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_free' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_process_info' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_path_nfs' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_get' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `sync_wait_mt' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_get_available_cpus' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_backtrace_buffer' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_btl_base_framework' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_app_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_event_poll_rate' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_test_and_set_item' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_thread_get_self' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_copy_content_same_ddt' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_components_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_show_orte_version' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_select' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append_unique_nosize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_read_value' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_finalize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_session_dir_finalize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_process_name_print' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_alloc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_type_depth' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `clock_gettime@GLIBC_2.2.5' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_buffer_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convert_process_name_to_string' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_abort_delay' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `sqrt@GLIBC_2.2.5' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_find_by_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_single_cpu' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_compare_proc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_item_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_contain_basic_datatypes' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_is_open' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_prepare_for_recv' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_compare' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_dss' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_unload' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_built_with_cuda_support' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_set_value' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_register' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_register_project_frameworks' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_next_key_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_add' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_compare_name_fields' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_finalize_util' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_event_users_increment' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_set_item' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_in_parallel_debugger' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_prepare_for_send' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_remove_value_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml_recv_callback' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_mpool_base_framework' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_ess' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_load' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_enum_create_flag' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_set_bit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_close_components' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_verbose' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_process_info' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append_nosize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_cpubind' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_pdata_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_free' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_close_components' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_proc_applied_binding' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_var_register' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_proc_is_bound' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_name_wildcard' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get_value' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_rcache_base_framework' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_find' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_write_value' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_cset2str' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_alloc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_init_util' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_create' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_open' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_thread_self_compare' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_grow_st' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_condition_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_show_help' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_predefined_elem_desc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_cuda_support' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_clone' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_odls' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_free' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_event_flag' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `clock_getres@GLIBC_2.2.5' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_unpack' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_register_synonym' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_find_by_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_split' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_strerror' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get_stamp' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_session_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_srand' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_arch_set_fortran_logical_size' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_object_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_convert_process_name_to_string' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_get_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_tree_print' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_class_initialize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_yield_when_idle' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_is_set_bit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_find_by_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_for_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_components_open' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_standalone_operation' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_uses_threads' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_convert_string_to_process_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_mutex_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_to_string' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_print_name_args' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_allocator_component_lookup' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_stop' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_abort_print_stack' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `log@GLIBC_2.2.5' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_uint64' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convert_string_to_process_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_commit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_find_and_set_first_unset_bit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_getcwd' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_errmgr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_dump_data_desc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_enum_create' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_repository_release' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_set_max_size' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_make_version_str' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_unregister' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_start' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_create_desc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_setenv' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_event_users_decrement' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_remove_value_ptr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_finalize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_clear_bit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_first_key_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_list_item_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_register_framework_params' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_open' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml_recv_cb_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_session_dir_cleanup' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_show_opal_version' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_add' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_resize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint64' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_t_class' | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
error: Cannot link MPI programs. Check your configuration!!! | |
---------------------------------------- | |
ERROR: Failed building wheel for mpi4py | |
Running setup.py clean for mpi4py | |
Building wheel for pytorch-lightning (setup.py): started | |
Building wheel for pytorch-lightning (setup.py): finished with status 'done' | |
Created wheel for pytorch-lightning: filename=pytorch_lightning-0.5.3.1-py3-none-any.whl size=63439 sha256=03fc530a3abddcf6664ff746a23897360a3339bf736978942328f161bc9ab606 | |
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Stored in directory: /root/.cache/pip/wheels/a0/be/35/ff5bcba1b2a600e3fd964678944e9ec568801c6b186208eac1 | |
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Created wheel for databricks-cli: filename=databricks_cli-0.10.0-py3-none-any.whl size=84289 sha256=173eea3b64d29da6ab432e29db260c8f484d6ded6b26d475d3ab22328d4a3707 | |
Stored in directory: /root/.cache/pip/wheels/42/80/f3/e65bdf6617f3be1fde02bc668bdb9e557fbe12b9e0ea71c660 | |
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Stored in directory: /root/.cache/pip/wheels/45/c7/ae/e99d2de2790440669b810f6681c3a29fbae92974fce26f8c05 | |
Building wheel for querystring-parser (setup.py): started | |
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Created wheel for querystring-parser: filename=querystring_parser-1.2.4-py3-none-any.whl size=7083 sha256=e5cbff07fab0f96a523729268bc27f67f8d6b365402a288990cc17bb44859aee | |
Stored in directory: /root/.cache/pip/wheels/f8/40/66/8086eda0ae68328969b6020dcba2b701af28065bd2efdb0663 | |
Building wheel for toolz (setup.py): started | |
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Created wheel for toolz: filename=toolz-0.10.0-py3-none-any.whl size=54600 sha256=c887e87ea99278743bde1eb906b83dba3c68e8851dc19054b3164858fa90ff03 | |
Stored in directory: /root/.cache/pip/wheels/7a/c6/a3/55de8967d8406f2fa641743b9d2dafc07a745590a786667d0a | |
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Stored in directory: /root/.cache/pip/wheels/f5/64/c7/5d835bd6bcea7f6f6313e257429495c98151bab4c951de5d30 | |
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Created wheel for gast: filename=gast-0.2.2-py3-none-any.whl size=6587 sha256=2ed59d147f0ff18d6d7c79bf26b46f45981cd2daecf17e78420e072bdd21de29 | |
Stored in directory: /root/.cache/pip/wheels/c4/b2/f9/b3052fd0a0c1e61f4eb5b879161a8b6670fb1c26951a5ad5d6 | |
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Created wheel for wrapt: filename=wrapt-1.12.1-cp35-cp35m-linux_x86_64.whl size=68626 sha256=183bd32c6852acc51561d20c50fed4b23390268d01851e2ee7bc8f5160935d6c | |
Stored in directory: /root/.cache/pip/wheels/b8/2d/88/2fb764a7404287819251978fbfe4cacf9b4d8a1d41fce5dd97 | |
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Created wheel for absl-py: filename=absl_py-0.9.0-py3-none-any.whl size=117798 sha256=d34fd3b880ec00b216234349e506024c30aee1d781bd771a9f961afdbf4a84c0 | |
Stored in directory: /root/.cache/pip/wheels/00/c0/fe/b499a8663e1697aa205f83a8b15a53a29dc4b9831643b0064b | |
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Stored in directory: /root/.cache/pip/wheels/91/0e/11/1f1321dce76e9c542907008e4a94ff79f8bf525a3fa32b09f3 | |
Building wheel for promise (setup.py): started | |
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Created wheel for promise: filename=promise-2.3-py3-none-any.whl size=20683 sha256=f5db07a6ecb2b832b12341e97369f3dcadc26d2bc6abe1c608f1f06322e05d27 | |
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Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491096 sha256=9e9eb7712e365758f03ae75393ad33c7a1ffbb756631f061c94b5d75560bfe7b | |
Stored in directory: /root/.cache/pip/wheels/c4/f0/ae/d4689c4532d1f111462ed6a884a7767d502e511ee65f0d8e1b | |
Building wheel for dill (setup.py): started | |
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Created wheel for dill: filename=dill-0.3.1.1-py3-none-any.whl size=77454 sha256=a5e4eb1670af07c7287cd0003c27c32bbcb16e9dda6209e6daf52c45fb8c0d68 | |
Stored in directory: /root/.cache/pip/wheels/34/63/8b/137c251bca70f301c47a62dae335f36c21a8b86e42c803129a | |
Building wheel for retrying (setup.py): started | |
Building wheel for retrying (setup.py): finished with status 'done' | |
Created wheel for retrying: filename=retrying-1.3.3-py3-none-any.whl size=6236 sha256=78ea9925f0c8d1e29c2d854fbad1c8af0da4c0a25341cda927c2165a66c1bcd2 | |
Stored in directory: /root/.cache/pip/wheels/3b/99/4f/0a1f6df79f19d8004535c0ef947d89ced988bf231c8a9e8491 | |
Building wheel for prometheus-client (setup.py): started | |
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Created wheel for prometheus-client: filename=prometheus_client-0.7.1-py3-none-any.whl size=41411 sha256=25d0a1f4e31e2a094253d8d74fc7fa1e7af9584f7c6504b0167db4973105bbe7 | |
Stored in directory: /root/.cache/pip/wheels/42/46/63/dfbe941f5fdd2a9629ee0cb87d8a856f7ce70066a5fb0c074c | |
Building wheel for tornado (setup.py): started | |
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Created wheel for tornado: filename=tornado-6.0.4-cp35-cp35m-linux_x86_64.whl size=427454 sha256=0fa8dfafb883f86bc8eb0c5ac736e577973e337343d3cadde29d9f6ea75b094a | |
Stored in directory: /root/.cache/pip/wheels/68/3c/1e/fd5ff3580fd107e6785d42a2d7e690396d1cefa44813561c29 | |
Building wheel for locket (setup.py): started | |
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Created wheel for locket: filename=locket-0.2.0-py3-none-any.whl size=3042 sha256=35969919c25cbb408019da2c8c8fd567410f5934fad6b77fb3dd90f90d494f3e | |
Stored in directory: /root/.cache/pip/wheels/6a/42/36/d0f74dd49f84ca53f8f7b2169a3a2f2a8c17a54bef9e076112 | |
Building wheel for psutil (setup.py): started | |
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Created wheel for psutil: filename=psutil-5.7.0-cp35-cp35m-linux_x86_64.whl size=270910 sha256=fa73f22f8e6f1384010b7f9e90b193e68f722bf338e42a4f2209cc03724e8494 | |
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Building wheel for googleapis-common-protos (setup.py): started | |
Building wheel for googleapis-common-protos (setup.py): finished with status 'done' | |
Created wheel for googleapis-common-protos: filename=googleapis_common_protos-1.51.0-py3-none-any.whl size=73425 sha256=c4a9cc5ec87ca058f313e6f7b1ee99f428b200de81e8257dc0c105dbf9b8f0c7 | |
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Building wheel for pyrsistent (setup.py): started | |
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Created wheel for pyrsistent: filename=pyrsistent-0.16.0-cp35-cp35m-linux_x86_64.whl size=113963 sha256=6977bd74b088badb37dcc9b11f2248aef0ca415654c82624969bb7107ac0fabb | |
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Building wheel for backcall (setup.py): started | |
Building wheel for backcall (setup.py): finished with status 'done' | |
Created wheel for backcall: filename=backcall-0.1.0-py3-none-any.whl size=10421 sha256=53501f1fa3e54d8c95ab8453f5529361fc85bf292205b617ce982b6f10f1baac | |
Stored in directory: /root/.cache/pip/wheels/cb/6f/5c/9b66a87adeb46fed2babb14407bae1271f5e41b6b34b642411 | |
Successfully built optuna chainer pytorch-lightning simplejson databricks-cli prometheus-flask-exporter querystring-parser toolz test-tube gast wrapt absl-py termcolor promise future dill retrying prometheus-client tornado locket psutil googleapis-common-protos pyrsistent backcall | |
Failed to build mpi4py | |
ERROR: mlflow 1.7.2 has requirement alembic<=1.4.1, but you'll have alembic 1.4.2 which is incompatible. | |
ERROR: mlflow 1.7.2 has requirement sqlalchemy<=1.3.13, but you'll have sqlalchemy 1.3.16 which is incompatible. | |
ERROR: mxnet 1.6.0 has requirement graphviz<0.9.0,>=0.8.1, but you'll have graphviz 0.13.2 which is incompatible. | |
ERROR: pytorch-lightning 0.5.3.1 has requirement numpy==1.16.4, but you'll have numpy 1.18.3 which is incompatible. | |
ERROR: pytorch-lightning 0.5.3.1 has requirement scikit-learn==0.20.2, but you'll have scikit-learn 0.22.2.post1 which is incompatible. | |
ERROR: pytorch-lightning 0.5.3.1 has requirement tqdm==4.35.0, but you'll have tqdm 4.45.0 which is incompatible. | |
Installing collected packages: graphviz, cycler, kiwisolver, matplotlib, pytz, pandas, retrying, plotly, catboost, typing-extensions, filelock, protobuf, chainer, scikit-learn, lightgbm, smmap, gitdb, gitpython, gunicorn, simplejson, chardet, idna, urllib3, requests, entrypoints, click, tabulate, configparser, databricks-cli, Werkzeug, Jinja2, itsdangerous, Flask, gorilla, prometheus-client, prometheus-flask-exporter, querystring-parser, websocket-client, docker, sqlparse, cloudpickle, mlflow, mpi4py, mxnet, decorator, ipython-genutils, traitlets, jupyter-core, pyzmq, tornado, jupyter-client, pyrsistent, attrs, zipp, importlib-metadata, jsonschema, nbformat, coverage, py, packaging, more-itertools, pluggy, pathlib2, pytest, prompt-toolkit, parso, jedi, backcall, ptyprocess, pexpect, pygments, pickleshare, ipython, ipykernel, nbval, torch, pytorch-ignite, pillow, imageio, networkx, PyWavelets, scikit-image, torchvision, llvmlite, xgboost, toolz, fsspec, locket, partd, dask, multipledispatch, dask-glm, numba, sortedcontainers, heapdict, zict, tblib, msgpack, psutil, distributed, dask-ml, keras-preprocessing, h5py, keras-applications, keras, webencodings, bleach, docutils, readme-renderer, pkginfo, requests-toolbelt, twine, oauthlib, requests-oauthlib, pyasn1, pyasn1-modules, rsa, cachetools, google-auth, google-auth-oauthlib, grpcio, absl-py, markdown, tensorboard, future, test-tube, pytorch-lightning, gast, wrapt, opt-einsum, tensorflow-estimator, termcolor, astor, google-pasta, tensorflow, googleapis-common-protos, tensorflow-metadata, promise, dill, tensorflow-datasets, optuna | |
Running setup.py install for mpi4py: started | |
Running setup.py install for mpi4py: finished with status 'error' | |
ERROR: Command errored out with exit status 1: | |
command: /opt/conda/envs/test/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-aqay2v45/install-record.txt --single-version-externally-managed --compile --install-headers /opt/conda/envs/test/include/python3.5m/mpi4py | |
cwd: /tmp/pip-install-c6xrtgj5/mpi4py/ | |
Complete output (354 lines): | |
running install | |
running build | |
running build_src | |
running build_py | |
creating build | |
creating build/lib.linux-x86_64-3.5 | |
creating build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.5/mpi4py | |
creating build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
creating build/lib.linux-x86_64-3.5/mpi4py/include | |
creating build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
running build_clib | |
MPI configuration: [mpi] from 'mpi.cfg' | |
MPI C compiler: /usr/bin/mpicc | |
MPI C++ compiler: /usr/bin/mpicxx | |
MPI F compiler: /usr/bin/mpifort | |
MPI F90 compiler: /usr/bin/mpif90 | |
MPI F77 compiler: /usr/bin/mpif77 | |
checking for library 'lmpe' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -llmpe -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -llmpe | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
building 'mpe' dylib library | |
creating build/temp.linux-x86_64-3.5 | |
creating build/temp.linux-x86_64-3.5/src | |
creating build/temp.linux-x86_64-3.5/src/lib-pmpi | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/mpe.o | |
creating build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi | |
/usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libmpe.so | |
checking for library 'vt-mpi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-mpi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-mpi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
checking for library 'vt.mpi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.mpi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.mpi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
building 'vt' dylib library | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt.o | |
/usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt.so | |
checking for library 'vt-mpi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-mpi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-mpi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
checking for library 'vt.mpi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.mpi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.mpi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
building 'vt-mpi' dylib library | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-mpi.o | |
/usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt-mpi.so | |
checking for library 'vt-hyb' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-hyb -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-hyb | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
checking for library 'vt.ompi' ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.ompi -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.ompi | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
building 'vt-hyb' dylib library | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-hyb.o | |
/usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt-hyb.so | |
running build_ext | |
MPI configuration: [mpi] from 'mpi.cfg' | |
MPI C compiler: /usr/bin/mpicc | |
MPI C++ compiler: /usr/bin/mpicxx | |
MPI F compiler: /usr/bin/mpifort | |
MPI F90 compiler: /usr/bin/mpif90 | |
MPI F77 compiler: /usr/bin/mpif77 | |
checking for dlopen() availability ... | |
checking for header 'dlfcn.h' ... | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
success! | |
removing: _configtest.c _configtest.o | |
success! | |
checking for library 'dl' ... | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o _configtest | |
success! | |
removing: _configtest.c _configtest.o _configtest | |
checking for function 'dlopen' ... | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o _configtest | |
success! | |
removing: _configtest.c _configtest.o _configtest | |
building 'mpi4py.dl' extension | |
gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/opt/conda/envs/test/include/python3.5m -c src/dynload.c -o build/temp.linux-x86_64-3.5/src/dynload.o | |
gcc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed build/temp.linux-x86_64-3.5/src/dynload.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o build/lib.linux-x86_64-3.5/mpi4py/dl.cpython-35m-x86_64-linux-gnu.so | |
checking for MPI compile and link ... | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
success! | |
removing: _configtest.c _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
/usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -o _configtest | |
/opt/conda/envs/test/compiler_compat/ld: warning: libopen-rte.so.20, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: warning: libopen-pal.so.20, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: warning: librt.so.1, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: warning: libm.so.6, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: warning: libhwloc.so.5, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_components_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_sort' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_get_topology' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_get_element_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_namelist_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_dump' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_install_dirs' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_ptr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_rand' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_alloc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_obj_by_depth' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_raw' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_strncpy' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_free' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_local_arch' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_item_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_backtrace_print' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_collect_all_data' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_ptr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_register' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_register_framework_params' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_iszero' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_cset2mapstr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_local_set' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_isincluded' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_dump_data_flags' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_topology' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_pack' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_stream_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_out' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_base_exchange' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_allocator_base_framework' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_join' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_base_async_modex' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_set_element_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_reset' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_free' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_process_info' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_path_nfs' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_get' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `sync_wait_mt' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_get_available_cpus' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_backtrace_buffer' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_btl_base_framework' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_app_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_event_poll_rate' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_test_and_set_item' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_thread_get_self' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_copy_content_same_ddt' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_components_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_show_orte_version' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_select' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append_unique_nosize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_read_value' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_finalize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_session_dir_finalize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_process_name_print' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_alloc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_type_depth' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `clock_gettime@GLIBC_2.2.5' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_buffer_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convert_process_name_to_string' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_abort_delay' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `sqrt@GLIBC_2.2.5' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_find_by_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_single_cpu' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_compare_proc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_item_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_contain_basic_datatypes' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_is_open' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_prepare_for_recv' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_compare' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_dss' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_unload' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_built_with_cuda_support' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_set_value' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_register' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_register_project_frameworks' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_next_key_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_add' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_compare_name_fields' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_finalize_util' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_event_users_increment' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_set_item' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_in_parallel_debugger' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_prepare_for_send' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_remove_value_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml_recv_callback' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_mpool_base_framework' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_ess' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_load' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_enum_create_flag' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_set_bit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_close_components' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_verbose' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_process_info' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append_nosize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_cpubind' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_pdata_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_free' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_close_components' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_proc_applied_binding' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_var_register' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_proc_is_bound' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_name_wildcard' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get_value' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_rcache_base_framework' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_find' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_write_value' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_cset2str' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_alloc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_init_util' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_create' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_open' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_thread_self_compare' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_grow_st' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_condition_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_show_help' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_predefined_elem_desc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_cuda_support' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_clone' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_odls' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_free' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_event_flag' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `clock_getres@GLIBC_2.2.5' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_unpack' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_register_synonym' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_find_by_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_split' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_strerror' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get_stamp' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_session_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_srand' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_arch_set_fortran_logical_size' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_object_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_convert_process_name_to_string' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_get_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_tree_print' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_class_initialize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_yield_when_idle' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_is_set_bit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_find_by_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_for_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_close' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_components_open' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_standalone_operation' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_uses_threads' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_convert_string_to_process_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_mutex_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_to_string' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_print_name_args' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_allocator_component_lookup' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_stop' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_abort_print_stack' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `log@GLIBC_2.2.5' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_uint64' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convert_string_to_process_name' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_commit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_find_and_set_first_unset_bit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_getcwd' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_errmgr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_dump_data_desc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_enum_create' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_repository_release' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_init' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_set_max_size' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_make_version_str' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_unregister' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_start' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_create_desc' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_setenv' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_event_users_decrement' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_remove_value_ptr' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_finalize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_clear_bit' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_first_key_uint32' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_list_item_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_register_framework_params' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_open' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml_recv_cb_t_class' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_session_dir_cleanup' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_show_opal_version' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_add' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get_count' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_resize' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint64' | |
/opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_t_class' | |
collect2: error: ld returned 1 exit status | |
failure. | |
removing: _configtest.c _configtest.o | |
error: Cannot link MPI programs. Check your configuration!!! | |
---------------------------------------- | |
ERROR: Command errored out with exit status 1: /opt/conda/envs/test/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-aqay2v45/install-record.txt --single-version-externally-managed --compile --install-headers /opt/conda/envs/test/include/python3.5m/mpi4py Check the logs for full command output. |
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FROM ubuntu:18.04 | |
RUN apt-get update \ | |
&& apt-get install -y --no-install-recommends \ | |
bc \ | |
bzip2 \ | |
ca-certificates \ | |
curl \ | |
git \ | |
less \ | |
libgdal-dev \ | |
libssl-dev \ | |
libffi-dev \ | |
libncurses-dev \ | |
libgl1 \ | |
jq \ | |
nfs-common \ | |
parallel \ | |
python-dev \ | |
python-pip \ | |
python-wheel \ | |
python-setuptools \ | |
tree \ | |
unzip \ | |
vim \ | |
wget \ | |
xterm \ | |
cmake \ | |
build-essential \ | |
&& apt-get clean \ | |
&& rm -rf /var/lib/apt/lists/* | |
SHELL ["/bin/bash", "-c"] | |
ENV PATH /opt/conda/bin:$PATH | |
RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh -O ~/miniconda.sh && \ | |
/bin/bash ~/miniconda.sh -b -p /opt/conda && \ | |
rm ~/miniconda.sh && \ | |
/opt/conda/bin/conda clean -tipsy && \ | |
ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \ | |
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \ | |
echo "conda activate base" >> ~/.bashrc | |
WORKDIR /root/ | |
RUN conda create -n test python=3.5 | |
RUN source activate test &&\ | |
git clone https://github.com/smly/optuna.git &&\ | |
cd optuna &&\ | |
apt-get update &&\ | |
apt-get -y install openmpi-bin libopenmpi-dev &&\ | |
python -m pip install --upgrade pip &&\ | |
pip install --progress-bar off -U setuptools &&\ | |
python setup.py sdist &&\ | |
pip install --progress-bar off $(ls dist/*.tar.gz) &&\ | |
python -c 'import optuna' &&\ | |
pip install --progress-bar off $(ls dist/*.tar.gz)[example] -f https://download.pytorch.org/whl/torch_stable.html | |
COPY run.sh . |
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Sending build context to Docker daemon 5.12kB | |
Step 1/9 : FROM ubuntu:18.04 | |
---> 4e5021d210f6 | |
Step 2/9 : RUN apt-get update && apt-get install -y --no-install-recommends bc bzip2 ca-certificates curl git less libgdal-dev libssl-dev libffi-dev libncurses-dev libgl1 jq nfs-common parallel python-dev python-pip python-wheel python-setuptools tree unzip vim wget xterm cmake build-essential && apt-get clean && rm -rf /var/lib/apt/lists/* | |
---> Using cache | |
---> 47bbcbeb2fe5 | |
Step 3/9 : SHELL ["/bin/bash", "-c"] | |
---> Using cache | |
---> 2c3bbd22b5fe | |
Step 4/9 : ENV PATH /opt/conda/bin:$PATH | |
---> Using cache | |
---> 5a26b16e15b7 | |
Step 5/9 : RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh -O ~/miniconda.sh && /bin/bash ~/miniconda.sh -b -p /opt/conda && rm ~/miniconda.sh && /opt/conda/bin/conda clean -tipsy && ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && echo "conda activate base" >> ~/.bashrc | |
---> Using cache | |
---> 202a1495fb3e | |
Step 6/9 : WORKDIR /root/ | |
---> Using cache | |
---> 2bb8250c5fa1 | |
Step 7/9 : RUN conda create -n test python=3.7 | |
---> Using cache | |
---> ce67509e66ee | |
Step 8/9 : RUN source activate test && wget https://github.com/smly/optuna/archive/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63.zip -O optuna_hotfix.zip && unzip optuna_hotfix.zip && cd optuna-* && apt-get update && apt-get -y install openmpi-bin libopenmpi-dev && python -m pip install --upgrade pip && pip install --progress-bar off -U setuptools && python setup.py sdist && pip install --progress-bar off $(ls dist/*.tar.gz) && python -c 'import optuna' && pip install --progress-bar off $(ls dist/*.tar.gz)[example] -f https://download.pytorch.org/whl/torch_stable.html | |
---> Running in 224bcd638e9f | |
--2020-04-21 05:31:13-- https://github.com/smly/optuna/archive/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63.zip | |
Resolving github.com (github.com)... 13.114.40.48 | |
Connecting to github.com (github.com)|13.114.40.48|:443... connected. | |
HTTP request sent, awaiting response... 302 Found | |
Location: https://codeload.github.com/smly/optuna/zip/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63 [following] | |
--2020-04-21 05:31:13-- https://codeload.github.com/smly/optuna/zip/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63 | |
Resolving codeload.github.com (codeload.github.com)... 52.68.31.213 | |
Connecting to codeload.github.com (codeload.github.com)|52.68.31.213|:443... connected. | |
HTTP request sent, awaiting response... 200 OK | |
Length: unspecified [application/zip] | |
Saving to: 'optuna_hotfix.zip' | |
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2020-04-21 05:31:14 (936 KB/s) - 'optuna_hotfix.zip' saved [509233] | |
Archive: optuna_hotfix.zip | |
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Reading package lists... | |
Reading package lists... | |
Building dependency tree... | |
Reading state information... | |
The following additional packages will be installed: | |
ibverbs-providers libfabric1 libhwloc-dev libhwloc-plugins libhwloc5 | |
libibverbs-dev libibverbs1 libnl-3-200 libnl-route-3-200 libnuma-dev | |
libnuma1 libopenmpi2 libpsm-infinipath1 librdmacm1 ocl-icd-libopencl1 | |
openmpi-common | |
Suggested packages: | |
libhwloc-contrib-plugins openmpi-doc opencl-icd gfortran | |
The following NEW packages will be installed: | |
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Building wheels for collected packages: optuna, alembic, PrettyTable, PyYAML, pyperclip | |
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Successfully built optuna alembic PrettyTable PyYAML pyperclip | |
Installing collected packages: six, python-dateutil, MarkupSafe, Mako, python-editor, sqlalchemy, alembic, PrettyTable, PyYAML, pyparsing, pyperclip, wcwidth, cmd2, pbr, stevedore, cliff, numpy, cmaes, colorlog, joblib, scipy, tqdm, optuna | |
Successfully installed Mako-1.1.2 MarkupSafe-1.1.1 PrettyTable-0.7.2 PyYAML-5.3.1 alembic-1.4.2 cliff-3.1.0 cmaes-0.4.0 cmd2-0.8.9 colorlog-4.1.0 joblib-0.14.1 numpy-1.18.3 optuna-1.3.0 pbr-5.4.5 pyparsing-2.4.7 pyperclip-1.8.0 python-dateutil-2.8.1 python-editor-1.0.4 scipy-1.4.1 six-1.14.0 sqlalchemy-1.3.16 stevedore-1.32.0 tqdm-4.45.0 wcwidth-0.1.9 | |
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Building wheels for collected packages: optuna, chainer, mpi4py, pytorch-lightning, querystring-parser, simplejson, prometheus-flask-exporter, databricks-cli, numpydoc, ftfy, nltk, parsimonious, word2number, jsonnet, overrides, bottleneck, nvidia-ml-py3, toolz, future, termcolor, absl-py, gast, wrapt, dill, promise, retrying, prometheus-client, tornado, locket, psutil, googleapis-common-protos, backcall, pyrsistent | |
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Building wheel for parsimonious (setup.py): started | |
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Created wheel for parsimonious: filename=parsimonious-0.8.1-py3-none-any.whl size=42709 sha256=6cfee70728ab57f9ba7ebb2173fd82b3a51ce16cc813d56dee8dc6935436d86c | |
Stored in directory: /root/.cache/pip/wheels/88/5d/ba/f27d8af07306b65ee44f9d3f9cadea1db749a421a6db8a99bf | |
Building wheel for word2number (setup.py): started | |
Building wheel for word2number (setup.py): finished with status 'done' | |
Created wheel for word2number: filename=word2number-1.1-py3-none-any.whl size=5586 sha256=368f73b3f6edf0eb6394df8deeb7ea5e782e09bb4200ffc2acd68f7e4b8bd246 | |
Stored in directory: /root/.cache/pip/wheels/4b/c3/77/a5f48aeb0d3efb7cd5ad61cbd3da30bbf9ffc9662b07c9f879 | |
Building wheel for jsonnet (setup.py): started | |
Building wheel for jsonnet (setup.py): finished with status 'done' | |
Created wheel for jsonnet: filename=jsonnet-0.15.0-cp37-cp37m-linux_x86_64.whl size=3324843 sha256=72c756c3b00dd17358ae3ae00bfbc6f62194d156a529537bacaa41131991992f | |
Stored in directory: /root/.cache/pip/wheels/21/01/e4/6fabcb0c191f51e98452f2af6cb2086f0f1cec94a2c0ce9948 | |
Building wheel for overrides (setup.py): started | |
Building wheel for overrides (setup.py): finished with status 'done' | |
Created wheel for overrides: filename=overrides-2.8.0-py3-none-any.whl size=5608 sha256=0c600395e2af59cd0694362407f27696a9f5803e506f4b5999a22f6cc6dc1f53 | |
Stored in directory: /root/.cache/pip/wheels/ac/34/8c/cea535228b1cebb4ee9c3ddc82fe0fa955dbae5e4e25d51457 | |
Building wheel for bottleneck (PEP 517): started | |
Building wheel for bottleneck (PEP 517): finished with status 'done' | |
Created wheel for bottleneck: filename=Bottleneck-1.3.2-cp37-cp37m-linux_x86_64.whl size=334843 sha256=5348ba3db51e3fd183b316c28ab94b4a1aba8f6e1a95ba9b4cac366715f9c75c | |
Stored in directory: /root/.cache/pip/wheels/87/85/9c/a325c89ff0498660ef8a335fb4b3912939c273ea4f094af29f | |
Building wheel for nvidia-ml-py3 (setup.py): started | |
Building wheel for nvidia-ml-py3 (setup.py): finished with status 'done' | |
Created wheel for nvidia-ml-py3: filename=nvidia_ml_py3-7.352.0-py3-none-any.whl size=19189 sha256=56877269e400bedcafdfd6a57c67318e86c8fa983c27f1330927265a582671b6 | |
Stored in directory: /root/.cache/pip/wheels/df/99/da/c34f202dc8fd1dffd35e0ecf1a7d7f8374ca05fbcbaf974b83 | |
Building wheel for toolz (setup.py): started | |
Building wheel for toolz (setup.py): finished with status 'done' | |
Created wheel for toolz: filename=toolz-0.10.0-py3-none-any.whl size=55575 sha256=c6c5e70dc28dbb44a1c4770d67398a2a5bc158e78a59a5272ca700ac01f2f618 | |
Stored in directory: /root/.cache/pip/wheels/e2/83/7c/248063997a4f9ff6bf145822e620e8c37117a6b4c765584077 | |
Building wheel for future (setup.py): started | |
Building wheel for future (setup.py): finished with status 'done' | |
Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=0fc11da10b1d76fdf1a3d681b6430160912e2f2248ab9890b769bd89b09c3f4c | |
Stored in directory: /root/.cache/pip/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 | |
Building wheel for termcolor (setup.py): started | |
Building wheel for termcolor (setup.py): finished with status 'done' | |
Created wheel for termcolor: filename=termcolor-1.1.0-py3-none-any.whl size=4830 sha256=7c499dff516589a2835ae12ad60ce8a38d26f42ec8693411d4122c613392c89b | |
Stored in directory: /root/.cache/pip/wheels/3f/e3/ec/8a8336ff196023622fbcb36de0c5a5c218cbb24111d1d4c7f2 | |
Building wheel for absl-py (setup.py): started | |
Building wheel for absl-py (setup.py): finished with status 'done' | |
Created wheel for absl-py: filename=absl_py-0.9.0-py3-none-any.whl size=121931 sha256=cd3106409eb68d63906c5eee8cd73db49a112a16fb23fa6c9fd090cf1ab1e7f7 | |
Stored in directory: /root/.cache/pip/wheels/cc/af/1a/498a24d0730ef484019e007bb9e8cef3ac00311a672c049a3e | |
Building wheel for gast (setup.py): started | |
Building wheel for gast (setup.py): finished with status 'done' | |
Created wheel for gast: filename=gast-0.2.2-py3-none-any.whl size=7539 sha256=2473f02085501842e155b14692715066ff2af37373c1af68dfba09010f211428 | |
Stored in directory: /root/.cache/pip/wheels/21/7f/02/420f32a803f7d0967b48dd823da3f558c5166991bfd204eef3 | |
Building wheel for wrapt (setup.py): started | |
Building wheel for wrapt (setup.py): finished with status 'done' | |
Created wheel for wrapt: filename=wrapt-1.12.1-cp37-cp37m-linux_x86_64.whl size=70952 sha256=50a5791cd24de709f8dd99839a07ed5a8c7089d43cb5d02235b3e636a18c6154 | |
Stored in directory: /root/.cache/pip/wheels/62/76/4c/aa25851149f3f6d9785f6c869387ad82b3fd37582fa8147ac6 | |
Building wheel for dill (setup.py): started | |
Building wheel for dill (setup.py): finished with status 'done' | |
Created wheel for dill: filename=dill-0.3.1.1-py3-none-any.whl size=78530 sha256=ccede8e92d426e41219246590bfd4fb48ff3f3cef9db68ecdade646039c8677e | |
Stored in directory: /root/.cache/pip/wheels/a4/61/fd/c57e374e580aa78a45ed78d5859b3a44436af17e22ca53284f | |
Building wheel for promise (setup.py): started | |
Building wheel for promise (setup.py): finished with status 'done' | |
Created wheel for promise: filename=promise-2.3-py3-none-any.whl size=21495 sha256=44a15dca82151088e8989aa35ee2a58478b86b8193c6ea55d1d39b19a0b0d087 | |
Stored in directory: /root/.cache/pip/wheels/29/93/c6/762e359f8cb6a5b69c72235d798804cae523bbe41c2aa8333d | |
Building wheel for retrying (setup.py): started | |
Building wheel for retrying (setup.py): finished with status 'done' | |
Created wheel for retrying: filename=retrying-1.3.3-py3-none-any.whl size=11430 sha256=00bf66ff1fae997191aa888975868fded5284b0be8306f68cb5ba3a75edcbda5 | |
Stored in directory: /root/.cache/pip/wheels/f9/8d/8d/f6af3f7f9eea3553bc2fe6d53e4b287dad18b06a861ac56ddf | |
Building wheel for prometheus-client (setup.py): started | |
Building wheel for prometheus-client (setup.py): finished with status 'done' | |
Created wheel for prometheus-client: filename=prometheus_client-0.7.1-py3-none-any.whl size=41404 sha256=e23d54220450103d7a5ad6cdf2e249f15d829be58a90918793b86bd38b873307 | |
Stored in directory: /root/.cache/pip/wheels/30/0c/26/59ba285bf65dc79d195e9b25e2ddde4c61070422729b0cd914 | |
Building wheel for tornado (setup.py): started | |
Building wheel for tornado (setup.py): finished with status 'done' | |
Created wheel for tornado: filename=tornado-6.0.4-cp37-cp37m-linux_x86_64.whl size=428642 sha256=036814be77d19d19bc2317a3ba8e28d5db4c0367de51578e29b4ac7b6cc6fb49 | |
Stored in directory: /root/.cache/pip/wheels/7d/14/fa/d88fb5da77d813ea0ffca38a2ab2a052874e9e1142bad0b348 | |
Building wheel for locket (setup.py): started | |
Building wheel for locket (setup.py): finished with status 'done' | |
Created wheel for locket: filename=locket-0.2.0-py3-none-any.whl size=4038 sha256=0b1caee94774987b30b5d176d28a189c7efd623aa64b09645ad35dd375f6dbec | |
Stored in directory: /root/.cache/pip/wheels/7d/21/ce/56f01c644a11bde5d09ecae16d9b5e9d7e988187624fd28fec | |
Building wheel for psutil (setup.py): started | |
Building wheel for psutil (setup.py): finished with status 'done' | |
Created wheel for psutil: filename=psutil-5.7.0-cp37-cp37m-linux_x86_64.whl size=276488 sha256=685f76d85924ac31afd25a290721d84474579f85daaf3b5fb4de53de1c7b1bb3 | |
Stored in directory: /root/.cache/pip/wheels/b6/e7/50/aee9cc966163d74430f13f208171dee22f11efa4a4a826661c | |
Building wheel for googleapis-common-protos (setup.py): started | |
Building wheel for googleapis-common-protos (setup.py): finished with status 'done' | |
Created wheel for googleapis-common-protos: filename=googleapis_common_protos-1.51.0-py3-none-any.whl size=77592 sha256=d597632fd5c3efd5c73b7b3fb0ef3681193d8fa78553fc07b134c66f8237ca39 | |
Stored in directory: /root/.cache/pip/wheels/4c/a1/71/5e427276ceeff277fd76878d1b19fbf4587a2845015d86864b | |
Building wheel for backcall (setup.py): started | |
Building wheel for backcall (setup.py): finished with status 'done' | |
Created wheel for backcall: filename=backcall-0.1.0-py3-none-any.whl size=10413 sha256=966900241c283af0ea9bbfd10c8e20c53ce9e4c51dbc52f2883d58b305963db6 | |
Stored in directory: /root/.cache/pip/wheels/9e/56/4f/da13e448a8a5b8671b2954600d5355cf36e557c7aa5020139b | |
Building wheel for pyrsistent (setup.py): started | |
Building wheel for pyrsistent (setup.py): finished with status 'done' | |
Created wheel for pyrsistent: filename=pyrsistent-0.16.0-cp37-cp37m-linux_x86_64.whl size=115921 sha256=7faa0d6275954a6e53892c26cd8399405bc8f92de0bb12ef268b8c68b61324bb | |
Stored in directory: /root/.cache/pip/wheels/22/52/11/f0920f95c23ed7d2d0b05f2b7b2f4509e87a20cfe8ea43d987 | |
Successfully built optuna chainer mpi4py pytorch-lightning querystring-parser simplejson prometheus-flask-exporter databricks-cli numpydoc ftfy nltk parsimonious word2number jsonnet overrides bottleneck nvidia-ml-py3 toolz future termcolor absl-py gast wrapt dill promise retrying prometheus-client tornado locket psutil googleapis-common-protos backcall pyrsistent | |
ERROR: mlflow 1.7.2 has requirement alembic<=1.4.1, but you'll have alembic 1.4.2 which is incompatible. | |
ERROR: mlflow 1.7.2 has requirement sqlalchemy<=1.3.13, but you'll have sqlalchemy 1.3.16 which is incompatible. | |
ERROR: mxnet 1.6.0 has requirement graphviz<0.9.0,>=0.8.1, but you'll have graphviz 0.13.2 which is incompatible. | |
ERROR: botocore 1.15.42 has requirement docutils<0.16,>=0.10, but you'll have docutils 0.16 which is incompatible. | |
ERROR: pytorch-lightning 0.6.0 has requirement torchvision<0.5,>=0.4.0, but you'll have torchvision 0.5.0+cpu which is incompatible. | |
ERROR: tensorflow 2.1.0 has requirement tensorboard<2.2.0,>=2.1.0, but you'll have tensorboard 2.2.1 which is incompatible. | |
Installing collected packages: pytz, pandas, graphviz, retrying, plotly, kiwisolver, cycler, matplotlib, catboost, typing-extensions, filelock, protobuf, chainer, scikit-learn, lightgbm, querystring-parser, gorilla, chardet, urllib3, idna, requests, click, Jinja2, itsdangerous, Werkzeug, Flask, cloudpickle, entrypoints, websocket-client, docker, gunicorn, sqlparse, smmap, gitdb, gitpython, simplejson, prometheus-client, prometheus-flask-exporter, tabulate, configparser, databricks-cli, mlflow, mpi4py, mxnet, ipython-genutils, decorator, traitlets, pyzmq, tornado, jupyter-core, jupyter-client, attrs, zipp, importlib-metadata, pluggy, py, packaging, more-itertools, pytest, ptyprocess, pexpect, pickleshare, backcall, prompt-toolkit, pygments, parso, jedi, ipython, ipykernel, pyrsistent, jsonschema, nbformat, coverage, nbval, torch, pytorch-ignite, pillow, imageio, PyWavelets, networkx, scikit-image, torchvision, xgboost, docutils, sphinxcontrib-serializinghtml, sphinxcontrib-devhelp, sphinxcontrib-htmlhelp, babel, sphinxcontrib-qthelp, alabaster, sphinxcontrib-applehelp, imagesize, snowballstemmer, sphinxcontrib-jsmath, sphinx, numpydoc, ftfy, unidecode, regex, jmespath, botocore, s3transfer, boto3, pytorch-pretrained-bert, nltk, editdistance, flaky, greenlet, gevent, parsimonious, responses, jsonpickle, word2number, sentencepiece, pytorch-transformers, jsonnet, tensorboardX, conllu, overrides, flask-cors, blis, srsly, plac, cymem, preshed, murmurhash, wasabi, thinc, spacy, h5py, allennlp, bottleneck, nvidia-ml-py3, fastprogress, numexpr, soupsieve, beautifulsoup4, fastai, toolz, locket, partd, fsspec, dask, sortedcontainers, tblib, psutil, heapdict, zict, msgpack, distributed, multipledispatch, dask-glm, llvmlite, numba, dask-ml, keras-preprocessing, keras-applications, keras, grpcio, absl-py, markdown, pyasn1, rsa, pyasn1-modules, cachetools, google-auth, oauthlib, requests-oauthlib, google-auth-oauthlib, tensorboard-plugin-wit, tensorboard, future, pytorch-lightning, termcolor, opt-einsum, gast, google-pasta, wrapt, astor, tensorflow-estimator, tensorflow, googleapis-common-protos, tensorflow-metadata, dill, promise, tensorflow-datasets, optuna | |
Attempting uninstall: optuna | |
Found existing installation: optuna 1.3.0 | |
Uninstalling optuna-1.3.0: | |
Successfully uninstalled optuna-1.3.0 | |
Successfully installed Flask-1.1.2 Jinja2-2.11.2 PyWavelets-1.1.1 Werkzeug-1.0.1 absl-py-0.9.0 alabaster-0.7.12 allennlp-0.9.0 astor-0.8.1 attrs-19.3.0 babel-2.8.0 backcall-0.1.0 beautifulsoup4-4.9.0 blis-0.2.4 boto3-1.12.42 botocore-1.15.42 bottleneck-1.3.2 cachetools-4.1.0 catboost-0.22 chainer-7.2.0 chardet-3.0.4 click-7.1.1 cloudpickle-1.3.0 configparser-5.0.0 conllu-1.3.1 coverage-5.1 cycler-0.10.0 cymem-2.0.3 dask-2.14.0 dask-glm-0.2.0 dask-ml-1.3.0 databricks-cli-0.10.0 decorator-4.4.2 dill-0.3.1.1 distributed-2.14.0 docker-4.2.0 docutils-0.16 editdistance-0.5.3 entrypoints-0.3 fastai-1.0.60 fastprogress-0.2.3 filelock-3.0.12 flaky-3.6.1 flask-cors-3.0.8 fsspec-0.7.2 ftfy-5.7 future-0.18.2 gast-0.2.2 gevent-1.5.0 gitdb-4.0.4 gitpython-3.1.1 google-auth-1.14.0 google-auth-oauthlib-0.4.1 google-pasta-0.2.0 googleapis-common-protos-1.51.0 gorilla-0.3.0 graphviz-0.13.2 greenlet-0.4.15 grpcio-1.28.1 gunicorn-20.0.4 h5py-2.10.0 heapdict-1.0.1 idna-2.9 imageio-2.8.0 imagesize-1.2.0 importlib-metadata-1.6.0 ipykernel-5.2.1 ipython-7.13.0 ipython-genutils-0.2.0 itsdangerous-1.1.0 jedi-0.17.0 jmespath-0.9.5 jsonnet-0.15.0 jsonpickle-1.4.1 jsonschema-3.2.0 jupyter-client-6.1.3 jupyter-core-4.6.3 keras-2.3.1 keras-applications-1.0.8 keras-preprocessing-1.1.0 kiwisolver-1.2.0 lightgbm-2.3.1 llvmlite-0.32.0 locket-0.2.0 markdown-3.2.1 matplotlib-3.2.1 mlflow-1.7.2 more-itertools-8.2.0 mpi4py-3.0.3 msgpack-1.0.0 multipledispatch-0.6.0 murmurhash-1.0.2 mxnet-1.6.0 nbformat-5.0.6 nbval-0.9.5 networkx-2.4 nltk-3.5 numba-0.49.0 numexpr-2.7.1 numpydoc-0.9.2 nvidia-ml-py3-7.352.0 oauthlib-3.1.0 opt-einsum-3.2.1 optuna-1.3.0 overrides-2.8.0 packaging-20.3 pandas-1.0.3 parsimonious-0.8.1 parso-0.7.0 partd-1.1.0 pexpect-4.8.0 pickleshare-0.7.5 pillow-7.1.1 plac-0.9.6 plotly-4.6.0 pluggy-0.13.1 preshed-2.0.1 prometheus-client-0.7.1 prometheus-flask-exporter-0.13.0 promise-2.3 prompt-toolkit-3.0.5 protobuf-3.11.3 psutil-5.7.0 ptyprocess-0.6.0 py-1.8.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pygments-2.6.1 pyrsistent-0.16.0 pytest-5.4.1 pytorch-ignite-0.3.0 pytorch-lightning-0.6.0 pytorch-pretrained-bert-0.6.2 pytorch-transformers-1.1.0 pytz-2019.3 pyzmq-19.0.0 querystring-parser-1.2.4 regex-2020.4.4 requests-2.23.0 requests-oauthlib-1.3.0 responses-0.10.14 retrying-1.3.3 rsa-4.0 s3transfer-0.3.3 scikit-image-0.16.2 scikit-learn-0.22.2.post1 sentencepiece-0.1.85 simplejson-3.17.0 smmap-3.0.2 snowballstemmer-2.0.0 sortedcontainers-2.1.0 soupsieve-2.0 spacy-2.1.9 sphinx-3.0.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.4 sqlparse-0.3.1 srsly-1.0.2 tabulate-0.8.7 tblib-1.6.0 tensorboard-2.2.1 tensorboard-plugin-wit-1.6.0.post3 tensorboardX-2.0 tensorflow-2.1.0 tensorflow-datasets-3.0.0 tensorflow-estimator-2.1.0 tensorflow-metadata-0.21.2 termcolor-1.1.0 thinc-7.0.8 toolz-0.10.0 torch-1.4.0+cpu torchvision-0.5.0+cpu tornado-6.0.4 traitlets-4.3.3 typing-extensions-3.7.4.2 unidecode-1.1.1 urllib3-1.25.9 wasabi-0.6.0 websocket-client-0.57.0 word2number-1.1 wrapt-1.12.1 xgboost-1.0.2 zict-2.0.0 zipp-3.1.0 | |
Removing intermediate container 224bcd638e9f | |
---> deceefcf4680 | |
Step 9/9 : COPY run.sh . | |
---> 567586561a31 | |
Successfully built 567586561a31 | |
Successfully tagged optuna-smly:3.7 |
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FROM ubuntu:18.04 | |
RUN apt-get update \ | |
&& apt-get install -y --no-install-recommends \ | |
bc \ | |
bzip2 \ | |
ca-certificates \ | |
curl \ | |
git \ | |
less \ | |
libgdal-dev \ | |
libssl-dev \ | |
libffi-dev \ | |
libncurses-dev \ | |
libgl1 \ | |
jq \ | |
nfs-common \ | |
parallel \ | |
python-dev \ | |
python-pip \ | |
python-wheel \ | |
python-setuptools \ | |
tree \ | |
unzip \ | |
vim \ | |
wget \ | |
xterm \ | |
cmake \ | |
build-essential \ | |
&& apt-get clean \ | |
&& rm -rf /var/lib/apt/lists/* | |
SHELL ["/bin/bash", "-c"] | |
ENV PATH /opt/conda/bin:$PATH | |
RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh -O ~/miniconda.sh && \ | |
/bin/bash ~/miniconda.sh -b -p /opt/conda && \ | |
rm ~/miniconda.sh && \ | |
/opt/conda/bin/conda clean -tipsy && \ | |
ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \ | |
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \ | |
echo "conda activate base" >> ~/.bashrc | |
WORKDIR /root/ | |
RUN conda create -n test python=3.7 | |
RUN source activate test &&\ | |
wget https://github.com/smly/optuna/archive/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63.zip -O optuna_hotfix.zip &&\ | |
unzip optuna_hotfix.zip &&\ | |
cd optuna-* &&\ | |
apt-get update &&\ | |
apt-get -y install openmpi-bin libopenmpi-dev &&\ | |
python -m pip install --upgrade pip &&\ | |
pip install --progress-bar off -U setuptools &&\ | |
python setup.py sdist &&\ | |
pip install --progress-bar off $(ls dist/*.tar.gz) &&\ | |
python -c 'import optuna' &&\ | |
pip install --progress-bar off $(ls dist/*.tar.gz)[example] -f https://download.pytorch.org/whl/torch_stable.html | |
COPY run.sh . |
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diff --git a/setup.py b/setup.py | |
index 5d42e41..0641cab 100644 | |
--- a/setup.py | |
+++ b/setup.py | |
@@ -74,6 +74,7 @@ def get_extras_require() -> Dict[str, List[str]]: | |
"scikit-learn", | |
"torch==1.4.0+cpu", | |
"torchvision==0.5.0+cpu", | |
+ "llvmlite==0.31.0", | |
"xgboost", | |
] | |
+ (["allennlp<1", "fastai<2"] if (3, 5) < sys.version_info[:2] < (3, 8) else []) |
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