- 3.5_build_log は
llvmlite==0.31.0の依存を追加 (patch: git_diff_4f1b4e3f95.patch) - 3.7_build_log は
llvmlite==0.31.0の依存を追加していない (master/HEAD)
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April 21, 2020 08:30
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| Sending build context to Docker daemon 5.12kB | |
| Step 1/9 : FROM ubuntu:18.04 | |
| ---> 4e5021d210f6 | |
| Step 2/9 : RUN apt-get update && apt-get install -y --no-install-recommends bc bzip2 ca-certificates curl git less libgdal-dev libssl-dev libffi-dev libncurses-dev libgl1 jq nfs-common parallel python-dev python-pip python-wheel python-setuptools tree unzip vim wget xterm cmake build-essential && apt-get clean && rm -rf /var/lib/apt/lists/* | |
| ---> Using cache | |
| ---> 47bbcbeb2fe5 | |
| Step 3/9 : SHELL ["/bin/bash", "-c"] | |
| ---> Using cache | |
| ---> 2c3bbd22b5fe | |
| Step 4/9 : ENV PATH /opt/conda/bin:$PATH | |
| ---> Using cache | |
| ---> 5a26b16e15b7 | |
| Step 5/9 : RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh -O ~/miniconda.sh && /bin/bash ~/miniconda.sh -b -p /opt/conda && rm ~/miniconda.sh && /opt/conda/bin/conda clean -tipsy && ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && echo "conda activate base" >> ~/.bashrc | |
| ---> Using cache | |
| ---> 202a1495fb3e | |
| Step 6/9 : WORKDIR /root/ | |
| ---> Using cache | |
| ---> 2bb8250c5fa1 | |
| Step 7/9 : RUN conda create -n test python=3.5 | |
| ---> Using cache | |
| ---> bba3eedc5030 | |
| Step 8/9 : RUN source activate test && git clone https://github.com/smly/optuna.git && cd optuna && apt-get update && apt-get -y install openmpi-bin libopenmpi-dev && python -m pip install --upgrade pip && pip install --progress-bar off -U setuptools && python setup.py sdist && pip install --progress-bar off $(ls dist/*.tar.gz) && python -c 'import optuna' && pip install --progress-bar off $(ls dist/*.tar.gz)[example] -f https://download.pytorch.org/whl/torch_stable.html | |
| ---> Running in 9f2764c4cb9d | |
| Cloning into 'optuna'... | |
| Get:1 http://security.ubuntu.com/ubuntu bionic-security InRelease [88.7 kB] | |
| Get:2 http://archive.ubuntu.com/ubuntu bionic InRelease [242 kB] | |
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| Get:4 http://archive.ubuntu.com/ubuntu bionic-updates InRelease [88.7 kB] | |
| Get:5 http://archive.ubuntu.com/ubuntu bionic-backports InRelease [74.6 kB] | |
| Get:6 http://archive.ubuntu.com/ubuntu bionic/universe amd64 Packages [11.3 MB] | |
| Get:7 http://security.ubuntu.com/ubuntu bionic-security/multiverse amd64 Packages [8213 B] | |
| Get:8 http://security.ubuntu.com/ubuntu bionic-security/main amd64 Packages [889 kB] | |
| Get:9 http://security.ubuntu.com/ubuntu bionic-security/restricted amd64 Packages [44.6 kB] | |
| Get:10 http://archive.ubuntu.com/ubuntu bionic/main amd64 Packages [1344 kB] | |
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| Get:12 http://archive.ubuntu.com/ubuntu bionic/multiverse amd64 Packages [186 kB] | |
| Get:13 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 Packages [1183 kB] | |
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| Get:17 http://archive.ubuntu.com/ubuntu bionic-backports/main amd64 Packages [8286 B] | |
| Get:18 http://archive.ubuntu.com/ubuntu bionic-backports/universe amd64 Packages [7674 B] | |
| Fetched 17.8 MB in 22s (813 kB/s) | |
| Reading package lists... | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| The following additional packages will be installed: | |
| ibverbs-providers libfabric1 libhwloc-dev libhwloc-plugins libhwloc5 | |
| libibverbs-dev libibverbs1 libnl-3-200 libnl-route-3-200 libnuma-dev | |
| libnuma1 libopenmpi2 libpsm-infinipath1 librdmacm1 ocl-icd-libopencl1 | |
| openmpi-common | |
| Suggested packages: | |
| libhwloc-contrib-plugins openmpi-doc opencl-icd gfortran | |
| The following NEW packages will be installed: | |
| ibverbs-providers libfabric1 libhwloc-dev libhwloc-plugins libhwloc5 | |
| libibverbs-dev libibverbs1 libnl-3-200 libnl-route-3-200 libnuma-dev | |
| libnuma1 libopenmpi-dev libopenmpi2 libpsm-infinipath1 librdmacm1 | |
| ocl-icd-libopencl1 openmpi-bin openmpi-common | |
| 0 upgraded, 18 newly installed, 0 to remove and 8 not upgraded. | |
| Need to get 4617 kB of archives. | |
| After this operation, 18.4 MB of additional disk space will be used. | |
| Get:1 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libnuma1 amd64 2.0.11-2.1ubuntu0.1 [22.0 kB] | |
| Get:2 http://archive.ubuntu.com/ubuntu bionic/main amd64 libnl-3-200 amd64 3.2.29-0ubuntu3 [52.8 kB] | |
| Get:3 http://archive.ubuntu.com/ubuntu bionic/main amd64 libnl-route-3-200 amd64 3.2.29-0ubuntu3 [146 kB] | |
| Get:4 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libibverbs1 amd64 17.1-1ubuntu0.2 [44.4 kB] | |
| Get:5 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 ibverbs-providers amd64 17.1-1ubuntu0.2 [160 kB] | |
| Get:6 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-5 [174 kB] | |
| Get:7 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 librdmacm1 amd64 17.1-1ubuntu0.2 [56.1 kB] | |
| Get:8 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libfabric1 amd64 1.5.3-1 [302 kB] | |
| Get:9 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libhwloc5 amd64 1.11.9-1 [105 kB] | |
| Get:10 http://archive.ubuntu.com/ubuntu bionic/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] | |
| Get:11 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libhwloc-plugins amd64 1.11.9-1 [12.5 kB] | |
| Get:12 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libopenmpi2 amd64 2.1.1-8 [2056 kB] | |
| Get:13 http://archive.ubuntu.com/ubuntu bionic/universe amd64 openmpi-common all 2.1.1-8 [140 kB] | |
| Get:14 http://archive.ubuntu.com/ubuntu bionic/universe amd64 openmpi-bin amd64 2.1.1-8 [88.2 kB] | |
| Get:15 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libnuma-dev amd64 2.0.11-2.1ubuntu0.1 [32.3 kB] | |
| Get:16 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libhwloc-dev amd64 1.11.9-1 [167 kB] | |
| Get:17 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libibverbs-dev amd64 17.1-1ubuntu0.2 [103 kB] | |
| Get:18 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libopenmpi-dev amd64 2.1.1-8 [925 kB] | |
| debconf: delaying package configuration, since apt-utils is not installed | |
| Fetched 4617 kB in 5s (874 kB/s) | |
| Selecting previously unselected package libnuma1:amd64. | |
| (Reading database ... 36820 files and directories currently installed.) | |
| Preparing to unpack .../00-libnuma1_2.0.11-2.1ubuntu0.1_amd64.deb ... | |
| Unpacking libnuma1:amd64 (2.0.11-2.1ubuntu0.1) ... | |
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| Unpacking libnl-3-200:amd64 (3.2.29-0ubuntu3) ... | |
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| Unpacking libpsm-infinipath1 (3.3+20.604758e7-5) ... | |
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| Selecting previously unselected package ocl-icd-libopencl1:amd64. | |
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| Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... | |
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| Unpacking libopenmpi-dev (2.1.1-8) ... | |
| Setting up libnuma1:amd64 (2.0.11-2.1ubuntu0.1) ... | |
| Setting up libhwloc5:amd64 (1.11.9-1) ... | |
| Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... | |
| update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode | |
| Setting up openmpi-common (2.1.1-8) ... | |
| Setting up libnuma-dev:amd64 (2.0.11-2.1ubuntu0.1) ... | |
| Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... | |
| Setting up libnl-3-200:amd64 (3.2.29-0ubuntu3) ... | |
| Setting up libhwloc-dev:amd64 (1.11.9-1) ... | |
| Setting up libnl-route-3-200:amd64 (3.2.29-0ubuntu3) ... | |
| Setting up libhwloc-plugins (1.11.9-1) ... | |
| Setting up libibverbs1:amd64 (17.1-1ubuntu0.2) ... | |
| Setting up librdmacm1:amd64 (17.1-1ubuntu0.2) ... | |
| Setting up ibverbs-providers:amd64 (17.1-1ubuntu0.2) ... | |
| Setting up libibverbs-dev:amd64 (17.1-1ubuntu0.2) ... | |
| Setting up libfabric1 (1.5.3-1) ... | |
| Setting up libopenmpi2:amd64 (2.1.1-8) ... | |
| Setting up libopenmpi-dev (2.1.1-8) ... | |
| update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/mpi (mpi) in auto mode | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpicc.1.gz because associated file /usr/share/man/man1/mpicc.openmpi.1.gz (of link group mpi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpic++.1.gz because associated file /usr/share/man/man1/mpic++.openmpi.1.gz (of link group mpi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpicxx.1.gz because associated file /usr/share/man/man1/mpicxx.openmpi.1.gz (of link group mpi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpiCC.1.gz because associated file /usr/share/man/man1/mpiCC.openmpi.1.gz (of link group mpi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpif77.1.gz because associated file /usr/share/man/man1/mpif77.openmpi.1.gz (of link group mpi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpif90.1.gz because associated file /usr/share/man/man1/mpif90.openmpi.1.gz (of link group mpi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpifort.1.gz because associated file /usr/share/man/man1/mpifort.openmpi.1.gz (of link group mpi) doesn't exist | |
| Setting up openmpi-bin (2.1.1-8) ... | |
| update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpirun.1.gz because associated file /usr/share/man/man1/mpirun.openmpi.1.gz (of link group mpirun) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist | |
| Processing triggers for libc-bin (2.27-3ubuntu1) ... | |
| Collecting pip | |
| Downloading https://files.pythonhosted.org/packages/54/0c/d01aa759fdc501a58f431eb594a17495f15b88da142ce14b5845662c13f3/pip-20.0.2-py2.py3-none-any.whl (1.4MB) | |
| Installing collected packages: pip | |
| Found existing installation: pip 10.0.1 | |
| Uninstalling pip-10.0.1: | |
| Successfully uninstalled pip-10.0.1 | |
| Successfully installed pip-20.0.2 | |
| You are using pip version 20.0.2, however version 20.1b1 is available. | |
| You should consider upgrading via the 'pip install --upgrade pip' command. | |
| Collecting setuptools | |
| Downloading setuptools-46.1.3-py3-none-any.whl (582 kB) | |
| Installing collected packages: setuptools | |
| Attempting uninstall: setuptools | |
| Found existing installation: setuptools 40.2.0 | |
| Uninstalling setuptools-40.2.0: | |
| Successfully uninstalled setuptools-40.2.0 | |
| Successfully installed setuptools-46.1.3 | |
| running sdist | |
| running egg_info | |
| creating optuna.egg-info | |
| writing optuna.egg-info/PKG-INFO | |
| writing top-level names to optuna.egg-info/top_level.txt | |
| writing requirements to optuna.egg-info/requires.txt | |
| writing entry points to optuna.egg-info/entry_points.txt | |
| writing dependency_links to optuna.egg-info/dependency_links.txt | |
| writing manifest file 'optuna.egg-info/SOURCES.txt' | |
| reading manifest file 'optuna.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| writing manifest file 'optuna.egg-info/SOURCES.txt' | |
| running check | |
| creating optuna-1.3.0 | |
| creating optuna-1.3.0/optuna | |
| creating optuna-1.3.0/optuna.egg-info | |
| creating optuna-1.3.0/optuna/importance | |
| creating optuna-1.3.0/optuna/integration | |
| creating optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| creating optuna-1.3.0/optuna/pruners | |
| creating optuna-1.3.0/optuna/samplers | |
| creating optuna-1.3.0/optuna/samplers/tpe | |
| creating optuna-1.3.0/optuna/storages | |
| creating optuna-1.3.0/optuna/storages/rdb | |
| creating optuna-1.3.0/optuna/storages/rdb/alembic | |
| creating optuna-1.3.0/optuna/storages/rdb/alembic/versions | |
| creating optuna-1.3.0/optuna/testing | |
| creating optuna-1.3.0/optuna/visualization | |
| creating optuna-1.3.0/tests | |
| creating optuna-1.3.0/tests/integration_tests | |
| creating optuna-1.3.0/tests/integration_tests/lightgbm_tuner_tests | |
| creating optuna-1.3.0/tests/pruners_tests | |
| creating optuna-1.3.0/tests/samplers_tests | |
| creating optuna-1.3.0/tests/samplers_tests/tpe_tests | |
| creating optuna-1.3.0/tests/storages_tests | |
| creating optuna-1.3.0/tests/storages_tests/rdb_tests | |
| creating optuna-1.3.0/tests/visualization_tests | |
| copying files to optuna-1.3.0... | |
| copying LICENSE -> optuna-1.3.0 | |
| copying MANIFEST.in -> optuna-1.3.0 | |
| copying README.md -> optuna-1.3.0 | |
| copying setup.cfg -> optuna-1.3.0 | |
| copying setup.py -> optuna-1.3.0 | |
| copying optuna/__init__.py -> optuna-1.3.0/optuna | |
| copying optuna/_experimental.py -> optuna-1.3.0/optuna | |
| copying optuna/_study_direction.py -> optuna-1.3.0/optuna | |
| copying optuna/_study_summary.py -> optuna-1.3.0/optuna | |
| copying optuna/cli.py -> optuna-1.3.0/optuna | |
| copying optuna/dashboard.py -> optuna-1.3.0/optuna | |
| copying optuna/distributions.py -> optuna-1.3.0/optuna | |
| copying optuna/exceptions.py -> optuna-1.3.0/optuna | |
| copying optuna/logging.py -> optuna-1.3.0/optuna | |
| copying optuna/progress_bar.py -> optuna-1.3.0/optuna | |
| copying optuna/structs.py -> optuna-1.3.0/optuna | |
| copying optuna/study.py -> optuna-1.3.0/optuna | |
| copying optuna/trial.py -> optuna-1.3.0/optuna | |
| copying optuna/type_checking.py -> optuna-1.3.0/optuna | |
| copying optuna/version.py -> optuna-1.3.0/optuna | |
| copying optuna.egg-info/PKG-INFO -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/SOURCES.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/dependency_links.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/entry_points.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/requires.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/top_level.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna/importance/__init__.py -> optuna-1.3.0/optuna/importance | |
| copying optuna/importance/_base.py -> optuna-1.3.0/optuna/importance | |
| copying optuna/importance/_fanova.py -> optuna-1.3.0/optuna/importance | |
| copying optuna/integration/__init__.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/allennlp.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/chainer.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/chainermn.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/cma.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/fastai.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/keras.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/lightgbm.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/mlflow.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/mxnet.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/pytorch_ignite.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/pytorch_lightning.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/sklearn.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/skopt.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/tensorflow.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/tfkeras.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/xgboost.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/lightgbm_tuner/__init__.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| copying optuna/integration/lightgbm_tuner/alias.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| copying optuna/integration/lightgbm_tuner/optimize.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| copying optuna/integration/lightgbm_tuner/sklearn.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| copying optuna/pruners/__init__.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/base.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/hyperband.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/median.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/nop.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/percentile.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/successive_halving.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/threshold.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/samplers/__init__.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/base.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/cmaes.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/grid.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/random.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/tpe/__init__.py -> optuna-1.3.0/optuna/samplers/tpe | |
| copying optuna/samplers/tpe/parzen_estimator.py -> optuna-1.3.0/optuna/samplers/tpe | |
| copying optuna/samplers/tpe/sampler.py -> optuna-1.3.0/optuna/samplers/tpe | |
| copying optuna/storages/__init__.py -> optuna-1.3.0/optuna/storages | |
| copying optuna/storages/base.py -> optuna-1.3.0/optuna/storages | |
| copying optuna/storages/in_memory.py -> optuna-1.3.0/optuna/storages | |
| copying optuna/storages/redis.py -> optuna-1.3.0/optuna/storages | |
| copying optuna/storages/rdb/__init__.py -> optuna-1.3.0/optuna/storages/rdb | |
| copying optuna/storages/rdb/alembic.ini -> optuna-1.3.0/optuna/storages/rdb | |
| copying optuna/storages/rdb/models.py -> optuna-1.3.0/optuna/storages/rdb | |
| copying optuna/storages/rdb/storage.py -> optuna-1.3.0/optuna/storages/rdb | |
| copying optuna/storages/rdb/alembic/env.py -> optuna-1.3.0/optuna/storages/rdb/alembic | |
| copying optuna/storages/rdb/alembic/script.py.mako -> optuna-1.3.0/optuna/storages/rdb/alembic | |
| copying optuna/storages/rdb/alembic/versions/v0.9.0.a.py -> optuna-1.3.0/optuna/storages/rdb/alembic/versions | |
| copying optuna/storages/rdb/alembic/versions/v1.2.0.a.py -> optuna-1.3.0/optuna/storages/rdb/alembic/versions | |
| copying optuna/storages/rdb/alembic/versions/v1.3.0.a.py -> optuna-1.3.0/optuna/storages/rdb/alembic/versions | |
| copying optuna/testing/__init__.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/distribution.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/integration.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/sampler.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/storage.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/visualization.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/visualization/__init__.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/contour.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/intermediate_values.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/optimization_history.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/parallel_coordinate.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/plotly_imports.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/slice.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/utils.py -> optuna-1.3.0/optuna/visualization | |
| copying tests/__init__.py -> optuna-1.3.0/tests | |
| copying tests/test_cli.py -> optuna-1.3.0/tests | |
| copying tests/test_dashboard.py -> optuna-1.3.0/tests | |
| copying tests/test_distributions.py -> optuna-1.3.0/tests | |
| copying tests/test_experimental.py -> optuna-1.3.0/tests | |
| copying tests/test_importance.py -> optuna-1.3.0/tests | |
| copying tests/test_logging.py -> optuna-1.3.0/tests | |
| copying tests/test_structs.py -> optuna-1.3.0/tests | |
| copying tests/test_study.py -> optuna-1.3.0/tests | |
| copying tests/test_trial.py -> optuna-1.3.0/tests | |
| copying tests/integration_tests/__init__.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_chainer.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_chainermn.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_cma.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_fastai.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_integration.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_keras.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_lightgbm.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_mlflow.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_mxnet.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_pytorch_ignite.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_pytorch_lightning.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_sampler.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_sklearn.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_skopt.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_tensorflow.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_tfkeras.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_xgboost.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/lightgbm_tuner_tests/__init__.py -> optuna-1.3.0/tests/integration_tests/lightgbm_tuner_tests | |
| copying tests/integration_tests/lightgbm_tuner_tests/test_alias.py -> optuna-1.3.0/tests/integration_tests/lightgbm_tuner_tests | |
| copying tests/integration_tests/lightgbm_tuner_tests/test_optimize.py -> optuna-1.3.0/tests/integration_tests/lightgbm_tuner_tests | |
| copying tests/pruners_tests/__init__.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_hyperband.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_median.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_nop.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_percentile.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_successive_halving.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_threshold.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/samplers_tests/__init__.py -> optuna-1.3.0/tests/samplers_tests | |
| copying tests/samplers_tests/test_cmaes.py -> optuna-1.3.0/tests/samplers_tests | |
| copying tests/samplers_tests/test_grid.py -> optuna-1.3.0/tests/samplers_tests | |
| copying tests/samplers_tests/test_samplers.py -> optuna-1.3.0/tests/samplers_tests | |
| copying tests/samplers_tests/tpe_tests/__init__.py -> optuna-1.3.0/tests/samplers_tests/tpe_tests | |
| copying tests/samplers_tests/tpe_tests/test_parzen_estimator.py -> optuna-1.3.0/tests/samplers_tests/tpe_tests | |
| copying tests/samplers_tests/tpe_tests/test_sampler.py -> optuna-1.3.0/tests/samplers_tests/tpe_tests | |
| copying tests/storages_tests/__init__.py -> optuna-1.3.0/tests/storages_tests | |
| copying tests/storages_tests/test_in_memory.py -> optuna-1.3.0/tests/storages_tests | |
| copying tests/storages_tests/test_storages.py -> optuna-1.3.0/tests/storages_tests | |
| copying tests/storages_tests/rdb_tests/__init__.py -> optuna-1.3.0/tests/storages_tests/rdb_tests | |
| copying tests/storages_tests/rdb_tests/test_models.py -> optuna-1.3.0/tests/storages_tests/rdb_tests | |
| copying tests/storages_tests/rdb_tests/test_storage.py -> optuna-1.3.0/tests/storages_tests/rdb_tests | |
| copying tests/visualization_tests/__init__.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_contour.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_intermediate_plot.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_optimization_history.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_parallel_coordinate.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_slice.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_utils.py -> optuna-1.3.0/tests/visualization_tests | |
| Writing optuna-1.3.0/setup.cfg | |
| creating dist | |
| Creating tar archive | |
| removing 'optuna-1.3.0' (and everything under it) | |
| Processing ./dist/optuna-1.3.0.tar.gz | |
| Collecting alembic | |
| Downloading alembic-1.4.2.tar.gz (1.1 MB) | |
| Installing build dependencies: started | |
| Installing build dependencies: finished with status 'done' | |
| Getting requirements to build wheel: started | |
| Getting requirements to build wheel: finished with status 'done' | |
| Preparing wheel metadata: started | |
| Preparing wheel metadata: finished with status 'done' | |
| Collecting cliff | |
| Downloading cliff-3.1.0-py3-none-any.whl (80 kB) | |
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| Collecting numpy | |
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| Collecting six>=1.10.0 | |
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| Collecting wcwidth; sys_platform != "win32" | |
| Downloading wcwidth-0.1.9-py2.py3-none-any.whl (19 kB) | |
| Building wheels for collected packages: optuna, alembic, sqlalchemy, PyYAML, PrettyTable, pyperclip | |
| Building wheel for optuna (setup.py): started | |
| Building wheel for optuna (setup.py): finished with status 'done' | |
| Created wheel for optuna: filename=optuna-1.3.0-py3-none-any.whl size=236241 sha256=2d3e716992afc703b9dab338a16132768a1fe3a5970ac3f98e3ee518a8cb7056 | |
| Stored in directory: /root/.cache/pip/wheels/c7/bd/45/1cb2bc8913bc5777a47507a4844de1f87f82a5fc4cb9de0577 | |
| Building wheel for alembic (PEP 517): started | |
| Building wheel for alembic (PEP 517): finished with status 'done' | |
| Created wheel for alembic: filename=alembic-1.4.2-py2.py3-none-any.whl size=159543 sha256=34585780f62b3cbf2af522f6840a20b5d31d35e6f00d9a665b225afd2017b6df | |
| Stored in directory: /root/.cache/pip/wheels/b4/b3/1b/29032899adb66180bd8877bd2be4ab5d76d890703f35e6fef6 | |
| Building wheel for sqlalchemy (setup.py): started | |
| Building wheel for sqlalchemy (setup.py): finished with status 'done' | |
| Created wheel for sqlalchemy: filename=SQLAlchemy-1.3.16-cp35-cp35m-linux_x86_64.whl size=1235829 sha256=d0a79b48f0bec75d4f1ec01f96cbb3c6a857c0118edd8413a5f8755edb3f585d | |
| Stored in directory: /root/.cache/pip/wheels/a7/98/c6/029dab0be99b1bd09b89094f5453c31a6ea1b34e54b97afe44 | |
| Building wheel for PyYAML (setup.py): started | |
| Building wheel for PyYAML (setup.py): finished with status 'done' | |
| Created wheel for PyYAML: filename=PyYAML-5.3.1-cp35-cp35m-linux_x86_64.whl size=44632 sha256=a373dee17ce155a24822c475ea2c1cbafd9ed858d04f8ed97835e1ac2c69bc69 | |
| Stored in directory: /root/.cache/pip/wheels/57/d0/2c/e2003abb5bc1a94c2e8a6fe1c03b8055d074e34c13672e7eb7 | |
| Building wheel for PrettyTable (setup.py): started | |
| Building wheel for PrettyTable (setup.py): finished with status 'done' | |
| Created wheel for PrettyTable: filename=prettytable-0.7.2-py3-none-any.whl size=12665 sha256=3c4f8dd36873eefa7e846225dc8a4ea116d45e61dfd9101afe346417b5d1f65d | |
| Stored in directory: /root/.cache/pip/wheels/d6/32/2e/336de55091b6c1a736f3e21d0cb74283f56ed266b57dd9f98d | |
| Building wheel for pyperclip (setup.py): started | |
| Building wheel for pyperclip (setup.py): finished with status 'done' | |
| Created wheel for pyperclip: filename=pyperclip-1.8.0-py3-none-any.whl size=8698 sha256=f20b2aec73de36f13ccfb8686f8b61285c4d751a91161d80c5d4cc86e8fa5b54 | |
| Stored in directory: /root/.cache/pip/wheels/07/04/82/2195d8695fd8774322ad65e28bd50327ca89737e47e73edb13 | |
| Successfully built optuna alembic sqlalchemy PyYAML PrettyTable pyperclip | |
| Installing collected packages: MarkupSafe, Mako, sqlalchemy, python-editor, six, python-dateutil, alembic, pyparsing, pbr, stevedore, PyYAML, PrettyTable, pyperclip, wcwidth, cmd2, cliff, numpy, cmaes, colorlog, joblib, scipy, tqdm, optuna | |
| Successfully installed Mako-1.1.2 MarkupSafe-1.1.1 PrettyTable-0.7.2 PyYAML-5.3.1 alembic-1.4.2 cliff-3.1.0 cmaes-0.4.0 cmd2-0.8.9 colorlog-4.1.0 joblib-0.14.1 numpy-1.18.3 optuna-1.3.0 pbr-5.4.5 pyparsing-2.4.7 pyperclip-1.8.0 python-dateutil-2.8.1 python-editor-1.0.4 scipy-1.4.1 six-1.14.0 sqlalchemy-1.3.16 stevedore-1.32.0 tqdm-4.45.0 wcwidth-0.1.9 | |
| Looking in links: https://download.pytorch.org/whl/torch_stable.html | |
| Processing ./dist/optuna-1.3.0.tar.gz | |
| Requirement already satisfied: alembic in /opt/conda/envs/test/lib/python3.5/site-packages (from optuna==1.3.0) (1.4.2) | |
| Requirement already satisfied: cliff in /opt/conda/envs/test/lib/python3.5/site-packages (from optuna==1.3.0) (3.1.0) | |
| Requirement already satisfied: cmaes>=0.3.2 in /opt/conda/envs/test/lib/python3.5/site-packages (from optuna==1.3.0) (0.4.0) | |
| Requirement already satisfied: colorlog in /opt/conda/envs/test/lib/python3.5/site-packages (from optuna==1.3.0) (4.1.0) | |
| Requirement already satisfied: joblib in /opt/conda/envs/test/lib/python3.5/site-packages (from optuna==1.3.0) (0.14.1) | |
| Requirement already satisfied: numpy in /opt/conda/envs/test/lib/python3.5/site-packages (from optuna==1.3.0) (1.18.3) | |
| Requirement already satisfied: scipy!=1.4.0 in /opt/conda/envs/test/lib/python3.5/site-packages (from optuna==1.3.0) (1.4.1) | |
| Requirement already satisfied: sqlalchemy>=1.1.0 in /opt/conda/envs/test/lib/python3.5/site-packages (from optuna==1.3.0) (1.3.16) | |
| Requirement already satisfied: tqdm in /opt/conda/envs/test/lib/python3.5/site-packages (from optuna==1.3.0) (4.45.0) | |
| Collecting catboost | |
| Downloading catboost-0.22-cp35-none-manylinux1_x86_64.whl (64.3 MB) | |
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| Collecting torch==1.4.0+cpu | |
| Downloading https://download.pytorch.org/whl/cpu/torch-1.4.0%2Bcpu-cp35-cp35m-linux_x86_64.whl (127.2 MB) | |
| Collecting torchvision==0.5.0+cpu | |
| Downloading https://download.pytorch.org/whl/cpu/torchvision-0.5.0%2Bcpu-cp35-cp35m-linux_x86_64.whl (5.4 MB) | |
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| Downloading tensorflow-2.1.0-cp35-cp35m-manylinux2010_x86_64.whl (421.8 MB) | |
| WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))': /simple/tensorflow-datasets/ | |
| Collecting tensorflow-datasets | |
| Downloading tensorflow_datasets-3.0.0-py3-none-any.whl (3.3 MB) | |
| Requirement already satisfied: python-editor>=0.3 in /opt/conda/envs/test/lib/python3.5/site-packages (from alembic->optuna==1.3.0) (1.0.4) | |
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| Building wheels for collected packages: optuna, chainer, mpi4py, pytorch-lightning, simplejson, databricks-cli, prometheus-flask-exporter, querystring-parser, toolz, test-tube, gast, wrapt, absl-py, termcolor, promise, future, dill, retrying, prometheus-client, tornado, locket, psutil, googleapis-common-protos, pyrsistent, backcall | |
| Building wheel for optuna (setup.py): started | |
| Building wheel for optuna (setup.py): finished with status 'done' | |
| Created wheel for optuna: filename=optuna-1.3.0-py3-none-any.whl size=236241 sha256=d73fdaa3acadd06182460327c99db639472ccf473a2b21c82cdbd454f8525258 | |
| Stored in directory: /root/.cache/pip/wheels/c7/bd/45/1cb2bc8913bc5777a47507a4844de1f87f82a5fc4cb9de0577 | |
| Building wheel for chainer (setup.py): started | |
| Building wheel for chainer (setup.py): finished with status 'done' | |
| Created wheel for chainer: filename=chainer-7.2.0-py3-none-any.whl size=966256 sha256=50122285e6438182170e23d0ea3099f3595cf044ac75f27e19beb5cd3835adb7 | |
| Stored in directory: /root/.cache/pip/wheels/fc/73/50/f07ed7493023e67bd047083b322a0f7662f8e440513ed6f290 | |
| Building wheel for mpi4py (setup.py): started | |
| Building wheel for mpi4py (setup.py): finished with status 'error' | |
| ERROR: Command errored out with exit status 1: | |
| command: /opt/conda/envs/test/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-oqulxw06 | |
| cwd: /tmp/pip-install-c6xrtgj5/mpi4py/ | |
| Complete output (354 lines): | |
| running bdist_wheel | |
| running build | |
| running build_src | |
| running build_py | |
| creating build | |
| creating build/lib.linux-x86_64-3.5 | |
| creating build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.5/mpi4py | |
| creating build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
| creating build/lib.linux-x86_64-3.5/mpi4py/include | |
| creating build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| running build_clib | |
| MPI configuration: [mpi] from 'mpi.cfg' | |
| MPI C compiler: /usr/bin/mpicc | |
| MPI C++ compiler: /usr/bin/mpicxx | |
| MPI F compiler: /usr/bin/mpifort | |
| MPI F90 compiler: /usr/bin/mpif90 | |
| MPI F77 compiler: /usr/bin/mpif77 | |
| checking for library 'lmpe' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -llmpe -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -llmpe | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'mpe' dylib library | |
| creating build/temp.linux-x86_64-3.5 | |
| creating build/temp.linux-x86_64-3.5/src | |
| creating build/temp.linux-x86_64-3.5/src/lib-pmpi | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/mpe.o | |
| creating build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi | |
| /usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libmpe.so | |
| checking for library 'vt-mpi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-mpi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-mpi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'vt.mpi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.mpi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.mpi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt' dylib library | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt.o | |
| /usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt.so | |
| checking for library 'vt-mpi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-mpi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-mpi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'vt.mpi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.mpi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.mpi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt-mpi' dylib library | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-mpi.o | |
| /usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt-mpi.so | |
| checking for library 'vt-hyb' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-hyb -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-hyb | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'vt.ompi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.ompi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.ompi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt-hyb' dylib library | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-hyb.o | |
| /usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt-hyb.so | |
| running build_ext | |
| MPI configuration: [mpi] from 'mpi.cfg' | |
| MPI C compiler: /usr/bin/mpicc | |
| MPI C++ compiler: /usr/bin/mpicxx | |
| MPI F compiler: /usr/bin/mpifort | |
| MPI F90 compiler: /usr/bin/mpif90 | |
| MPI F77 compiler: /usr/bin/mpif77 | |
| checking for dlopen() availability ... | |
| checking for header 'dlfcn.h' ... | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| success! | |
| removing: _configtest.c _configtest.o | |
| success! | |
| checking for library 'dl' ... | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o _configtest | |
| success! | |
| removing: _configtest.c _configtest.o _configtest | |
| checking for function 'dlopen' ... | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o _configtest | |
| success! | |
| removing: _configtest.c _configtest.o _configtest | |
| building 'mpi4py.dl' extension | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/opt/conda/envs/test/include/python3.5m -c src/dynload.c -o build/temp.linux-x86_64-3.5/src/dynload.o | |
| gcc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed build/temp.linux-x86_64-3.5/src/dynload.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o build/lib.linux-x86_64-3.5/mpi4py/dl.cpython-35m-x86_64-linux-gnu.so | |
| checking for MPI compile and link ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| success! | |
| removing: _configtest.c _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: warning: libopen-rte.so.20, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: warning: libopen-pal.so.20, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: warning: librt.so.1, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: warning: libm.so.6, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: warning: libhwloc.so.5, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_components_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_sort' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_get_topology' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_get_element_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_namelist_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_dump' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_install_dirs' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_ptr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_rand' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_alloc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_obj_by_depth' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_raw' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_strncpy' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_free' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_local_arch' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_item_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_backtrace_print' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_collect_all_data' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_ptr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_register' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_register_framework_params' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_iszero' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_cset2mapstr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_local_set' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_isincluded' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_dump_data_flags' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_topology' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_pack' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_stream_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_out' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_base_exchange' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_allocator_base_framework' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_join' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_base_async_modex' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_set_element_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_reset' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_free' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_process_info' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_path_nfs' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_get' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `sync_wait_mt' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_get_available_cpus' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_backtrace_buffer' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_btl_base_framework' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_app_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_event_poll_rate' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_test_and_set_item' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_thread_get_self' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_copy_content_same_ddt' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_components_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_show_orte_version' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_select' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append_unique_nosize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_read_value' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_finalize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_session_dir_finalize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_process_name_print' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_alloc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_type_depth' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `clock_gettime@GLIBC_2.2.5' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_buffer_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convert_process_name_to_string' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_abort_delay' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `sqrt@GLIBC_2.2.5' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_find_by_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_single_cpu' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_compare_proc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_item_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_contain_basic_datatypes' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_is_open' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_prepare_for_recv' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_compare' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_dss' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_unload' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_built_with_cuda_support' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_set_value' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_register' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_register_project_frameworks' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_next_key_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_add' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_compare_name_fields' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_finalize_util' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_event_users_increment' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_set_item' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_in_parallel_debugger' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_prepare_for_send' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_remove_value_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml_recv_callback' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_mpool_base_framework' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_ess' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_load' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_enum_create_flag' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_set_bit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_close_components' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_verbose' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_process_info' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append_nosize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_cpubind' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_pdata_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_free' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_close_components' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_proc_applied_binding' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_var_register' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_proc_is_bound' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_name_wildcard' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get_value' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_rcache_base_framework' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_find' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_write_value' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_cset2str' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_alloc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_init_util' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_create' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_open' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_thread_self_compare' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_grow_st' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_condition_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_show_help' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_predefined_elem_desc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_cuda_support' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_clone' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_odls' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_free' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_event_flag' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `clock_getres@GLIBC_2.2.5' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_unpack' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_register_synonym' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_find_by_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_split' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_strerror' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get_stamp' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_session_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_srand' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_arch_set_fortran_logical_size' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_object_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_convert_process_name_to_string' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_get_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_tree_print' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_class_initialize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_yield_when_idle' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_is_set_bit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_find_by_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_for_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_components_open' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_standalone_operation' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_uses_threads' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_convert_string_to_process_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_mutex_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_to_string' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_print_name_args' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_allocator_component_lookup' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_stop' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_abort_print_stack' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `log@GLIBC_2.2.5' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_uint64' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convert_string_to_process_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_commit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_find_and_set_first_unset_bit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_getcwd' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_errmgr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_dump_data_desc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_enum_create' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_repository_release' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_set_max_size' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_make_version_str' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_unregister' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_start' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_create_desc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_setenv' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_event_users_decrement' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_remove_value_ptr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_finalize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_clear_bit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_first_key_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_list_item_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_register_framework_params' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_open' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml_recv_cb_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_session_dir_cleanup' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_show_opal_version' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_add' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_resize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint64' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_t_class' | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| error: Cannot link MPI programs. Check your configuration!!! | |
| ---------------------------------------- | |
| ERROR: Failed building wheel for mpi4py | |
| Running setup.py clean for mpi4py | |
| Building wheel for pytorch-lightning (setup.py): started | |
| Building wheel for pytorch-lightning (setup.py): finished with status 'done' | |
| Created wheel for pytorch-lightning: filename=pytorch_lightning-0.5.3.1-py3-none-any.whl size=63439 sha256=03fc530a3abddcf6664ff746a23897360a3339bf736978942328f161bc9ab606 | |
| Stored in directory: /root/.cache/pip/wheels/68/b6/44/bd43cddb035838307395f211c1d0051df6c5844ef877f663b2 | |
| Building wheel for simplejson (setup.py): started | |
| Building wheel for simplejson (setup.py): finished with status 'done' | |
| Created wheel for simplejson: filename=simplejson-3.17.0-cp35-cp35m-linux_x86_64.whl size=119400 sha256=9da898d9331ab0447f5781838dc0287e44d877e8db0fdbea3ec161089935a055 | |
| Stored in directory: /root/.cache/pip/wheels/a0/be/35/ff5bcba1b2a600e3fd964678944e9ec568801c6b186208eac1 | |
| Building wheel for databricks-cli (setup.py): started | |
| Building wheel for databricks-cli (setup.py): finished with status 'done' | |
| Created wheel for databricks-cli: filename=databricks_cli-0.10.0-py3-none-any.whl size=84289 sha256=173eea3b64d29da6ab432e29db260c8f484d6ded6b26d475d3ab22328d4a3707 | |
| Stored in directory: /root/.cache/pip/wheels/42/80/f3/e65bdf6617f3be1fde02bc668bdb9e557fbe12b9e0ea71c660 | |
| Building wheel for prometheus-flask-exporter (setup.py): started | |
| Building wheel for prometheus-flask-exporter (setup.py): finished with status 'done' | |
| Created wheel for prometheus-flask-exporter: filename=prometheus_flask_exporter-0.13.0-py3-none-any.whl size=14096 sha256=ab030c440749aec8eda4811da26862be74e0ee111d04470fc44efa5443ec2e27 | |
| Stored in directory: /root/.cache/pip/wheels/45/c7/ae/e99d2de2790440669b810f6681c3a29fbae92974fce26f8c05 | |
| Building wheel for querystring-parser (setup.py): started | |
| Building wheel for querystring-parser (setup.py): finished with status 'done' | |
| Created wheel for querystring-parser: filename=querystring_parser-1.2.4-py3-none-any.whl size=7083 sha256=e5cbff07fab0f96a523729268bc27f67f8d6b365402a288990cc17bb44859aee | |
| Stored in directory: /root/.cache/pip/wheels/f8/40/66/8086eda0ae68328969b6020dcba2b701af28065bd2efdb0663 | |
| Building wheel for toolz (setup.py): started | |
| Building wheel for toolz (setup.py): finished with status 'done' | |
| Created wheel for toolz: filename=toolz-0.10.0-py3-none-any.whl size=54600 sha256=c887e87ea99278743bde1eb906b83dba3c68e8851dc19054b3164858fa90ff03 | |
| Stored in directory: /root/.cache/pip/wheels/7a/c6/a3/55de8967d8406f2fa641743b9d2dafc07a745590a786667d0a | |
| Building wheel for test-tube (setup.py): started | |
| Building wheel for test-tube (setup.py): finished with status 'done' | |
| Created wheel for test-tube: filename=test_tube-0.7.5-py3-none-any.whl size=25365 sha256=304f51b90bdc9f5e52368623b718d899c8bbd499b1b736048c04600293719016 | |
| Stored in directory: /root/.cache/pip/wheels/f5/64/c7/5d835bd6bcea7f6f6313e257429495c98151bab4c951de5d30 | |
| Building wheel for gast (setup.py): started | |
| Building wheel for gast (setup.py): finished with status 'done' | |
| Created wheel for gast: filename=gast-0.2.2-py3-none-any.whl size=6587 sha256=2ed59d147f0ff18d6d7c79bf26b46f45981cd2daecf17e78420e072bdd21de29 | |
| Stored in directory: /root/.cache/pip/wheels/c4/b2/f9/b3052fd0a0c1e61f4eb5b879161a8b6670fb1c26951a5ad5d6 | |
| Building wheel for wrapt (setup.py): started | |
| Building wheel for wrapt (setup.py): finished with status 'done' | |
| Created wheel for wrapt: filename=wrapt-1.12.1-cp35-cp35m-linux_x86_64.whl size=68626 sha256=183bd32c6852acc51561d20c50fed4b23390268d01851e2ee7bc8f5160935d6c | |
| Stored in directory: /root/.cache/pip/wheels/b8/2d/88/2fb764a7404287819251978fbfe4cacf9b4d8a1d41fce5dd97 | |
| Building wheel for absl-py (setup.py): started | |
| Building wheel for absl-py (setup.py): finished with status 'done' | |
| Created wheel for absl-py: filename=absl_py-0.9.0-py3-none-any.whl size=117798 sha256=d34fd3b880ec00b216234349e506024c30aee1d781bd771a9f961afdbf4a84c0 | |
| Stored in directory: /root/.cache/pip/wheels/00/c0/fe/b499a8663e1697aa205f83a8b15a53a29dc4b9831643b0064b | |
| Building wheel for termcolor (setup.py): started | |
| Building wheel for termcolor (setup.py): finished with status 'done' | |
| Created wheel for termcolor: filename=termcolor-1.1.0-py3-none-any.whl size=4001 sha256=316b7e8ed9bb7dafeca8739b1860da6ac0344614aa7116b673839ecb23cddbc8 | |
| Stored in directory: /root/.cache/pip/wheels/91/0e/11/1f1321dce76e9c542907008e4a94ff79f8bf525a3fa32b09f3 | |
| Building wheel for promise (setup.py): started | |
| Building wheel for promise (setup.py): finished with status 'done' | |
| Created wheel for promise: filename=promise-2.3-py3-none-any.whl size=20683 sha256=f5db07a6ecb2b832b12341e97369f3dcadc26d2bc6abe1c608f1f06322e05d27 | |
| Stored in directory: /root/.cache/pip/wheels/b6/3e/4e/d80f74df03a8059f631b23ec49939d8fa0a2633522596b6ffd | |
| Building wheel for future (setup.py): started | |
| Building wheel for future (setup.py): finished with status 'done' | |
| Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491096 sha256=9e9eb7712e365758f03ae75393ad33c7a1ffbb756631f061c94b5d75560bfe7b | |
| Stored in directory: /root/.cache/pip/wheels/c4/f0/ae/d4689c4532d1f111462ed6a884a7767d502e511ee65f0d8e1b | |
| Building wheel for dill (setup.py): started | |
| Building wheel for dill (setup.py): finished with status 'done' | |
| Created wheel for dill: filename=dill-0.3.1.1-py3-none-any.whl size=77454 sha256=a5e4eb1670af07c7287cd0003c27c32bbcb16e9dda6209e6daf52c45fb8c0d68 | |
| Stored in directory: /root/.cache/pip/wheels/34/63/8b/137c251bca70f301c47a62dae335f36c21a8b86e42c803129a | |
| Building wheel for retrying (setup.py): started | |
| Building wheel for retrying (setup.py): finished with status 'done' | |
| Created wheel for retrying: filename=retrying-1.3.3-py3-none-any.whl size=6236 sha256=78ea9925f0c8d1e29c2d854fbad1c8af0da4c0a25341cda927c2165a66c1bcd2 | |
| Stored in directory: /root/.cache/pip/wheels/3b/99/4f/0a1f6df79f19d8004535c0ef947d89ced988bf231c8a9e8491 | |
| Building wheel for prometheus-client (setup.py): started | |
| Building wheel for prometheus-client (setup.py): finished with status 'done' | |
| Created wheel for prometheus-client: filename=prometheus_client-0.7.1-py3-none-any.whl size=41411 sha256=25d0a1f4e31e2a094253d8d74fc7fa1e7af9584f7c6504b0167db4973105bbe7 | |
| Stored in directory: /root/.cache/pip/wheels/42/46/63/dfbe941f5fdd2a9629ee0cb87d8a856f7ce70066a5fb0c074c | |
| Building wheel for tornado (setup.py): started | |
| Building wheel for tornado (setup.py): finished with status 'done' | |
| Created wheel for tornado: filename=tornado-6.0.4-cp35-cp35m-linux_x86_64.whl size=427454 sha256=0fa8dfafb883f86bc8eb0c5ac736e577973e337343d3cadde29d9f6ea75b094a | |
| Stored in directory: /root/.cache/pip/wheels/68/3c/1e/fd5ff3580fd107e6785d42a2d7e690396d1cefa44813561c29 | |
| Building wheel for locket (setup.py): started | |
| Building wheel for locket (setup.py): finished with status 'done' | |
| Created wheel for locket: filename=locket-0.2.0-py3-none-any.whl size=3042 sha256=35969919c25cbb408019da2c8c8fd567410f5934fad6b77fb3dd90f90d494f3e | |
| Stored in directory: /root/.cache/pip/wheels/6a/42/36/d0f74dd49f84ca53f8f7b2169a3a2f2a8c17a54bef9e076112 | |
| Building wheel for psutil (setup.py): started | |
| Building wheel for psutil (setup.py): finished with status 'done' | |
| Created wheel for psutil: filename=psutil-5.7.0-cp35-cp35m-linux_x86_64.whl size=270910 sha256=fa73f22f8e6f1384010b7f9e90b193e68f722bf338e42a4f2209cc03724e8494 | |
| Stored in directory: /root/.cache/pip/wheels/bf/8a/50/4becf3b59de9aae0750147dfbf2f23470c9670c7c31c00df19 | |
| Building wheel for googleapis-common-protos (setup.py): started | |
| Building wheel for googleapis-common-protos (setup.py): finished with status 'done' | |
| Created wheel for googleapis-common-protos: filename=googleapis_common_protos-1.51.0-py3-none-any.whl size=73425 sha256=c4a9cc5ec87ca058f313e6f7b1ee99f428b200de81e8257dc0c105dbf9b8f0c7 | |
| Stored in directory: /root/.cache/pip/wheels/5c/81/f1/0063a8a61e2539679dd4b5a3d7fbbf19dc10899d87b379aa49 | |
| Building wheel for pyrsistent (setup.py): started | |
| Building wheel for pyrsistent (setup.py): finished with status 'done' | |
| Created wheel for pyrsistent: filename=pyrsistent-0.16.0-cp35-cp35m-linux_x86_64.whl size=113963 sha256=6977bd74b088badb37dcc9b11f2248aef0ca415654c82624969bb7107ac0fabb | |
| Stored in directory: /root/.cache/pip/wheels/f1/3d/7d/164146cafaba2e9030e2a28c54ed76aa13363cd339fa700687 | |
| Building wheel for backcall (setup.py): started | |
| Building wheel for backcall (setup.py): finished with status 'done' | |
| Created wheel for backcall: filename=backcall-0.1.0-py3-none-any.whl size=10421 sha256=53501f1fa3e54d8c95ab8453f5529361fc85bf292205b617ce982b6f10f1baac | |
| Stored in directory: /root/.cache/pip/wheels/cb/6f/5c/9b66a87adeb46fed2babb14407bae1271f5e41b6b34b642411 | |
| Successfully built optuna chainer pytorch-lightning simplejson databricks-cli prometheus-flask-exporter querystring-parser toolz test-tube gast wrapt absl-py termcolor promise future dill retrying prometheus-client tornado locket psutil googleapis-common-protos pyrsistent backcall | |
| Failed to build mpi4py | |
| ERROR: mlflow 1.7.2 has requirement alembic<=1.4.1, but you'll have alembic 1.4.2 which is incompatible. | |
| ERROR: mlflow 1.7.2 has requirement sqlalchemy<=1.3.13, but you'll have sqlalchemy 1.3.16 which is incompatible. | |
| ERROR: mxnet 1.6.0 has requirement graphviz<0.9.0,>=0.8.1, but you'll have graphviz 0.13.2 which is incompatible. | |
| ERROR: pytorch-lightning 0.5.3.1 has requirement numpy==1.16.4, but you'll have numpy 1.18.3 which is incompatible. | |
| ERROR: pytorch-lightning 0.5.3.1 has requirement scikit-learn==0.20.2, but you'll have scikit-learn 0.22.2.post1 which is incompatible. | |
| ERROR: pytorch-lightning 0.5.3.1 has requirement tqdm==4.35.0, but you'll have tqdm 4.45.0 which is incompatible. | |
| Installing collected packages: graphviz, cycler, kiwisolver, matplotlib, pytz, pandas, retrying, plotly, catboost, typing-extensions, filelock, protobuf, chainer, scikit-learn, lightgbm, smmap, gitdb, gitpython, gunicorn, simplejson, chardet, idna, urllib3, requests, entrypoints, click, tabulate, configparser, databricks-cli, Werkzeug, Jinja2, itsdangerous, Flask, gorilla, prometheus-client, prometheus-flask-exporter, querystring-parser, websocket-client, docker, sqlparse, cloudpickle, mlflow, mpi4py, mxnet, decorator, ipython-genutils, traitlets, jupyter-core, pyzmq, tornado, jupyter-client, pyrsistent, attrs, zipp, importlib-metadata, jsonschema, nbformat, coverage, py, packaging, more-itertools, pluggy, pathlib2, pytest, prompt-toolkit, parso, jedi, backcall, ptyprocess, pexpect, pygments, pickleshare, ipython, ipykernel, nbval, torch, pytorch-ignite, pillow, imageio, networkx, PyWavelets, scikit-image, torchvision, llvmlite, xgboost, toolz, fsspec, locket, partd, dask, multipledispatch, dask-glm, numba, sortedcontainers, heapdict, zict, tblib, msgpack, psutil, distributed, dask-ml, keras-preprocessing, h5py, keras-applications, keras, webencodings, bleach, docutils, readme-renderer, pkginfo, requests-toolbelt, twine, oauthlib, requests-oauthlib, pyasn1, pyasn1-modules, rsa, cachetools, google-auth, google-auth-oauthlib, grpcio, absl-py, markdown, tensorboard, future, test-tube, pytorch-lightning, gast, wrapt, opt-einsum, tensorflow-estimator, termcolor, astor, google-pasta, tensorflow, googleapis-common-protos, tensorflow-metadata, promise, dill, tensorflow-datasets, optuna | |
| Running setup.py install for mpi4py: started | |
| Running setup.py install for mpi4py: finished with status 'error' | |
| ERROR: Command errored out with exit status 1: | |
| command: /opt/conda/envs/test/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-aqay2v45/install-record.txt --single-version-externally-managed --compile --install-headers /opt/conda/envs/test/include/python3.5m/mpi4py | |
| cwd: /tmp/pip-install-c6xrtgj5/mpi4py/ | |
| Complete output (354 lines): | |
| running install | |
| running build | |
| running build_src | |
| running build_py | |
| creating build | |
| creating build/lib.linux-x86_64-3.5 | |
| creating build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.5/mpi4py | |
| creating build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.5/mpi4py/futures | |
| copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
| copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.5/mpi4py | |
| creating build/lib.linux-x86_64-3.5/mpi4py/include | |
| creating build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.5/mpi4py/include/mpi4py | |
| running build_clib | |
| MPI configuration: [mpi] from 'mpi.cfg' | |
| MPI C compiler: /usr/bin/mpicc | |
| MPI C++ compiler: /usr/bin/mpicxx | |
| MPI F compiler: /usr/bin/mpifort | |
| MPI F90 compiler: /usr/bin/mpif90 | |
| MPI F77 compiler: /usr/bin/mpif77 | |
| checking for library 'lmpe' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -llmpe -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -llmpe | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'mpe' dylib library | |
| creating build/temp.linux-x86_64-3.5 | |
| creating build/temp.linux-x86_64-3.5/src | |
| creating build/temp.linux-x86_64-3.5/src/lib-pmpi | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/mpe.o | |
| creating build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi | |
| /usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libmpe.so | |
| checking for library 'vt-mpi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-mpi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-mpi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'vt.mpi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.mpi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.mpi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt' dylib library | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt.o | |
| /usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt.so | |
| checking for library 'vt-mpi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-mpi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-mpi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'vt.mpi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.mpi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.mpi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt-mpi' dylib library | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-mpi.o | |
| /usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt-mpi.so | |
| checking for library 'vt-hyb' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt-hyb -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt-hyb | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| checking for library 'vt.ompi' ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -lvt.ompi -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: cannot find -lvt.ompi | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| building 'vt-hyb' dylib library | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-hyb.o | |
| /usr/bin/mpicc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed -Wl,--no-as-needed build/temp.linux-x86_64-3.5/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.5/mpi4py/lib-pmpi/libvt-hyb.so | |
| running build_ext | |
| MPI configuration: [mpi] from 'mpi.cfg' | |
| MPI C compiler: /usr/bin/mpicc | |
| MPI C++ compiler: /usr/bin/mpicxx | |
| MPI F compiler: /usr/bin/mpifort | |
| MPI F90 compiler: /usr/bin/mpif90 | |
| MPI F77 compiler: /usr/bin/mpif77 | |
| checking for dlopen() availability ... | |
| checking for header 'dlfcn.h' ... | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| success! | |
| removing: _configtest.c _configtest.o | |
| success! | |
| checking for library 'dl' ... | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o _configtest | |
| success! | |
| removing: _configtest.c _configtest.o _configtest | |
| checking for function 'dlopen' ... | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o _configtest | |
| success! | |
| removing: _configtest.c _configtest.o _configtest | |
| building 'mpi4py.dl' extension | |
| gcc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/opt/conda/envs/test/include/python3.5m -c src/dynload.c -o build/temp.linux-x86_64-3.5/src/dynload.o | |
| gcc -pthread -shared -L/opt/conda/envs/test/lib -B /opt/conda/envs/test/compiler_compat -Wl,-rpath=/opt/conda/envs/test/lib,--no-as-needed build/temp.linux-x86_64-3.5/src/dynload.o -Lbuild/temp.linux-x86_64-3.5 -ldl -o build/lib.linux-x86_64-3.5/mpi4py/dl.cpython-35m-x86_64-linux-gnu.so | |
| checking for MPI compile and link ... | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| success! | |
| removing: _configtest.c _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/test/include/python3.5m -c _configtest.c -o _configtest.o | |
| /usr/bin/mpicc -pthread -B /opt/conda/envs/test/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.5 -o _configtest | |
| /opt/conda/envs/test/compiler_compat/ld: warning: libopen-rte.so.20, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: warning: libopen-pal.so.20, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: warning: librt.so.1, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: warning: libm.so.6, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: warning: libhwloc.so.5, needed by /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so, not found (try using -rpath or -rpath-link) | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_components_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_sort' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_get_topology' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_get_element_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_namelist_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_dump' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_install_dirs' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_ptr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_rand' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_alloc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_obj_by_depth' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_raw' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_strncpy' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_free' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_local_arch' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_item_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_backtrace_print' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_collect_all_data' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_ptr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_register' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_register_framework_params' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_iszero' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_cset2mapstr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_local_set' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_isincluded' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_dump_data_flags' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_topology' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_pack' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_stream_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_out' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_base_exchange' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_allocator_base_framework' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_join' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_base_async_modex' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_set_element_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_reset' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_free' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_process_info' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_path_nfs' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_get' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `sync_wait_mt' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_get_available_cpus' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_backtrace_buffer' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_btl_base_framework' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_app_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_event_poll_rate' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_test_and_set_item' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_thread_get_self' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_copy_content_same_ddt' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_components_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_show_orte_version' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_select' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append_unique_nosize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_read_value' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_finalize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_session_dir_finalize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_process_name_print' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_alloc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_type_depth' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `clock_gettime@GLIBC_2.2.5' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_buffer_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convert_process_name_to_string' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_abort_delay' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `sqrt@GLIBC_2.2.5' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_find_by_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_single_cpu' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_compare_proc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_item_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_contain_basic_datatypes' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_is_open' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_prepare_for_recv' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_bitmap_compare' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_dss' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_unload' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_built_with_cuda_support' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_set_value' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_register' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_register_project_frameworks' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_next_key_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_add' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_compare_name_fields' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_finalize_util' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_event_users_increment' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pointer_array_set_item' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_in_parallel_debugger' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_prepare_for_send' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_remove_value_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml_recv_callback' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_mpool_base_framework' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_ess' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_load' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_enum_create_flag' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_set_bit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_close_components' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_verbose' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_process_info' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append_nosize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `hwloc_get_cpubind' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix_pdata_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_free' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_close_components' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_proc_applied_binding' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_var_register' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_proc_is_bound' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_name_wildcard' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get_value' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_rcache_base_framework' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_find' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_write_value' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hwloc_base_cset2str' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_alloc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_init_util' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_create' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_output_open' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_thread_self_compare' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_grow_st' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_condition_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_show_help' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_predefined_elem_desc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_cuda_support' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_clone' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_odls' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_free' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_event_flag' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `clock_getres@GLIBC_2.2.5' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convertor_unpack' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_register_synonym' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_find_by_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_split' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_strerror' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get_stamp' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_session_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_pmix' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_srand' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_arch_set_fortran_logical_size' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_object_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_convert_process_name_to_string' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_get_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_mpool_base_tree_print' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_class_initialize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_set_yield_when_idle' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_is_set_bit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_get_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_find_by_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_for_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_close' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_components_open' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_standalone_operation' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_uses_threads' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_convert_string_to_process_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_proc_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_argv_append' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_mutex_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_to_string' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_util_print_name_args' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_allocator_component_lookup' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_stop' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_abort_print_stack' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `log@GLIBC_2.2.5' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_value_uint64' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_convert_string_to_process_name' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_commit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_find_and_set_first_unset_bit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_getcwd' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_errmgr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_dump_data_desc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_enum_create' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_repository_release' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_value_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_free_list_init' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_set_max_size' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_make_version_str' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_unregister' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_pvar_handle_start' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_create_desc' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_setenv' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_progress_event_users_decrement' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_remove_value_ptr' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_finalize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_clear_bit' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_bitmap_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_get_first_key_uint32' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_component_list_item_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_info_register_framework_params' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_framework_open' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_rml_recv_cb_t_class' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `orte_session_dir_cleanup' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_info_show_opal_version' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_add' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `mca_base_var_group_get_count' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_datatype_resize' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_hash_table_set_value_uint64' | |
| /opt/conda/envs/test/compiler_compat/ld: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so: undefined reference to `opal_list_t_class' | |
| collect2: error: ld returned 1 exit status | |
| failure. | |
| removing: _configtest.c _configtest.o | |
| error: Cannot link MPI programs. Check your configuration!!! | |
| ---------------------------------------- | |
| ERROR: Command errored out with exit status 1: /opt/conda/envs/test/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-c6xrtgj5/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-aqay2v45/install-record.txt --single-version-externally-managed --compile --install-headers /opt/conda/envs/test/include/python3.5m/mpi4py Check the logs for full command output. |
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| FROM ubuntu:18.04 | |
| RUN apt-get update \ | |
| && apt-get install -y --no-install-recommends \ | |
| bc \ | |
| bzip2 \ | |
| ca-certificates \ | |
| curl \ | |
| git \ | |
| less \ | |
| libgdal-dev \ | |
| libssl-dev \ | |
| libffi-dev \ | |
| libncurses-dev \ | |
| libgl1 \ | |
| jq \ | |
| nfs-common \ | |
| parallel \ | |
| python-dev \ | |
| python-pip \ | |
| python-wheel \ | |
| python-setuptools \ | |
| tree \ | |
| unzip \ | |
| vim \ | |
| wget \ | |
| xterm \ | |
| cmake \ | |
| build-essential \ | |
| && apt-get clean \ | |
| && rm -rf /var/lib/apt/lists/* | |
| SHELL ["/bin/bash", "-c"] | |
| ENV PATH /opt/conda/bin:$PATH | |
| RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh -O ~/miniconda.sh && \ | |
| /bin/bash ~/miniconda.sh -b -p /opt/conda && \ | |
| rm ~/miniconda.sh && \ | |
| /opt/conda/bin/conda clean -tipsy && \ | |
| ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \ | |
| echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \ | |
| echo "conda activate base" >> ~/.bashrc | |
| WORKDIR /root/ | |
| RUN conda create -n test python=3.5 | |
| RUN source activate test &&\ | |
| git clone https://github.com/smly/optuna.git &&\ | |
| cd optuna &&\ | |
| apt-get update &&\ | |
| apt-get -y install openmpi-bin libopenmpi-dev &&\ | |
| python -m pip install --upgrade pip &&\ | |
| pip install --progress-bar off -U setuptools &&\ | |
| python setup.py sdist &&\ | |
| pip install --progress-bar off $(ls dist/*.tar.gz) &&\ | |
| python -c 'import optuna' &&\ | |
| pip install --progress-bar off $(ls dist/*.tar.gz)[example] -f https://download.pytorch.org/whl/torch_stable.html | |
| COPY run.sh . |
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| Sending build context to Docker daemon 5.12kB | |
| Step 1/9 : FROM ubuntu:18.04 | |
| ---> 4e5021d210f6 | |
| Step 2/9 : RUN apt-get update && apt-get install -y --no-install-recommends bc bzip2 ca-certificates curl git less libgdal-dev libssl-dev libffi-dev libncurses-dev libgl1 jq nfs-common parallel python-dev python-pip python-wheel python-setuptools tree unzip vim wget xterm cmake build-essential && apt-get clean && rm -rf /var/lib/apt/lists/* | |
| ---> Using cache | |
| ---> 47bbcbeb2fe5 | |
| Step 3/9 : SHELL ["/bin/bash", "-c"] | |
| ---> Using cache | |
| ---> 2c3bbd22b5fe | |
| Step 4/9 : ENV PATH /opt/conda/bin:$PATH | |
| ---> Using cache | |
| ---> 5a26b16e15b7 | |
| Step 5/9 : RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh -O ~/miniconda.sh && /bin/bash ~/miniconda.sh -b -p /opt/conda && rm ~/miniconda.sh && /opt/conda/bin/conda clean -tipsy && ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && echo "conda activate base" >> ~/.bashrc | |
| ---> Using cache | |
| ---> 202a1495fb3e | |
| Step 6/9 : WORKDIR /root/ | |
| ---> Using cache | |
| ---> 2bb8250c5fa1 | |
| Step 7/9 : RUN conda create -n test python=3.7 | |
| ---> Using cache | |
| ---> ce67509e66ee | |
| Step 8/9 : RUN source activate test && wget https://github.com/smly/optuna/archive/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63.zip -O optuna_hotfix.zip && unzip optuna_hotfix.zip && cd optuna-* && apt-get update && apt-get -y install openmpi-bin libopenmpi-dev && python -m pip install --upgrade pip && pip install --progress-bar off -U setuptools && python setup.py sdist && pip install --progress-bar off $(ls dist/*.tar.gz) && python -c 'import optuna' && pip install --progress-bar off $(ls dist/*.tar.gz)[example] -f https://download.pytorch.org/whl/torch_stable.html | |
| ---> Running in 224bcd638e9f | |
| --2020-04-21 05:31:13-- https://github.com/smly/optuna/archive/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63.zip | |
| Resolving github.com (github.com)... 13.114.40.48 | |
| Connecting to github.com (github.com)|13.114.40.48|:443... connected. | |
| HTTP request sent, awaiting response... 302 Found | |
| Location: https://codeload.github.com/smly/optuna/zip/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63 [following] | |
| --2020-04-21 05:31:13-- https://codeload.github.com/smly/optuna/zip/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63 | |
| Resolving codeload.github.com (codeload.github.com)... 52.68.31.213 | |
| Connecting to codeload.github.com (codeload.github.com)|52.68.31.213|:443... connected. | |
| HTTP request sent, awaiting response... 200 OK | |
| Length: unspecified [application/zip] | |
| Saving to: 'optuna_hotfix.zip' | |
| 0K .......... .......... .......... .......... .......... 516K | |
| 50K .......... .......... .......... .......... .......... 1.04M | |
| 100K .......... .......... .......... .......... .......... 987K | |
| 150K .......... .......... .......... .......... .......... 1016K | |
| 200K .......... .......... .......... .......... .......... 968K | |
| 250K .......... .......... .......... .......... .......... 985K | |
| 300K .......... .......... .......... .......... .......... 939K | |
| 350K .......... .......... .......... .......... .......... 6.15M | |
| 400K .......... .......... .......... .......... .......... 776K | |
| 450K .......... .......... .......... .......... ....... 795K=0.5s | |
| 2020-04-21 05:31:14 (936 KB/s) - 'optuna_hotfix.zip' saved [509233] | |
| Archive: optuna_hotfix.zip | |
| 4f1b4e3f95e7ace1627af869e9c484b46ae3fb63 | |
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| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/examples/visualization/plot_study.ipynb | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/examples/visualization/plot_study.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/examples/xgboost_simple.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/_experimental.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/_study_direction.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/_study_summary.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/cli.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/dashboard.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/distributions.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/exceptions.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/importance/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/importance/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/importance/_base.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/importance/_fanova.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/allennlp.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/chainer.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/chainermn.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/cma.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/fastai.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/keras.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/lightgbm.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/lightgbm_tuner/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/lightgbm_tuner/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/lightgbm_tuner/alias.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/lightgbm_tuner/optimize.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/lightgbm_tuner/sklearn.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/mlflow.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/mxnet.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/pytorch_ignite.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/pytorch_lightning.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/sklearn.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/skopt.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/tensorflow.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/tfkeras.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/integration/xgboost.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/logging.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/progress_bar.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/pruners/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/pruners/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/pruners/base.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/pruners/hyperband.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/pruners/median.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/pruners/nop.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/pruners/percentile.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/pruners/successive_halving.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/pruners/threshold.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/base.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/cmaes.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/grid.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/random.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/tpe/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/tpe/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/tpe/parzen_estimator.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/samplers/tpe/sampler.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/base.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/in_memory.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/alembic.ini | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/alembic/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/alembic/env.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/alembic/script.py.mako | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/alembic/versions/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/alembic/versions/v0.9.0.a.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/alembic/versions/v1.2.0.a.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/alembic/versions/v1.3.0.a.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/models.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/rdb/storage.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/storages/redis.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/structs.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/study.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/testing/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/testing/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/testing/distribution.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/testing/integration.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/testing/sampler.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/testing/storage.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/testing/visualization.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/trial.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/type_checking.py | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/version.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/visualization/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/visualization/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/visualization/contour.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/visualization/intermediate_values.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/visualization/optimization_history.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/visualization/parallel_coordinate.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/visualization/plotly_imports.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/visualization/slice.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/optuna/visualization/utils.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/setup.cfg | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/setup.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/__init__.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/__init__.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/allennlp_tests/ | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/allennlp_tests/example.jsonnet | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/allennlp_tests/example_with_include_package.jsonnet | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/allennlp_tests/invalid.jsonnet | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/allennlp_tests/test.jsonnet | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/allennlp_tests/test_allennlp.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/allennlp_tests/tiny_single_id.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/lightgbm_tuner_tests/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/lightgbm_tuner_tests/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/lightgbm_tuner_tests/test_alias.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/lightgbm_tuner_tests/test_optimize.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_chainer.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_chainermn.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_cma.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_fastai.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_integration.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_keras.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_lightgbm.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_mlflow.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_mxnet.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_pytorch_ignite.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_pytorch_lightning.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_sampler.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_sklearn.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_skopt.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_tensorflow.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_tfkeras.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/integration_tests/test_xgboost.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/pruners_tests/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/pruners_tests/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/pruners_tests/test_hyperband.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/pruners_tests/test_median.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/pruners_tests/test_nop.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/pruners_tests/test_percentile.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/pruners_tests/test_successive_halving.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/pruners_tests/test_threshold.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/samplers_tests/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/samplers_tests/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/samplers_tests/test_cmaes.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/samplers_tests/test_grid.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/samplers_tests/test_samplers.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/samplers_tests/tpe_tests/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/samplers_tests/tpe_tests/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/samplers_tests/tpe_tests/test_parzen_estimator.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/samplers_tests/tpe_tests/test_sampler.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/storages_tests/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/storages_tests/__init__.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/storages_tests/rdb_tests/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/storages_tests/rdb_tests/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/storages_tests/rdb_tests/test_models.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/storages_tests/rdb_tests/test_storage.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/storages_tests/test_in_memory.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/storages_tests/test_storages.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/test_cli.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/test_dashboard.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/test_distributions.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/test_experimental.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/test_importance.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/test_logging.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/test_structs.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/test_study.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/test_trial.py | |
| creating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/visualization_tests/ | |
| extracting: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/visualization_tests/__init__.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/visualization_tests/test_contour.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/visualization_tests/test_intermediate_plot.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/visualization_tests/test_optimization_history.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/visualization_tests/test_parallel_coordinate.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/visualization_tests/test_slice.py | |
| inflating: optuna-4f1b4e3f95e7ace1627af869e9c484b46ae3fb63/tests/visualization_tests/test_utils.py | |
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| Get:17 http://archive.ubuntu.com/ubuntu bionic-backports/main amd64 Packages [8286 B] | |
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| ibverbs-providers libfabric1 libhwloc-dev libhwloc-plugins libhwloc5 | |
| libibverbs-dev libibverbs1 libnl-3-200 libnl-route-3-200 libnuma-dev | |
| libnuma1 libopenmpi2 libpsm-infinipath1 librdmacm1 ocl-icd-libopencl1 | |
| openmpi-common | |
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| libhwloc-contrib-plugins openmpi-doc opencl-icd gfortran | |
| The following NEW packages will be installed: | |
| ibverbs-providers libfabric1 libhwloc-dev libhwloc-plugins libhwloc5 | |
| libibverbs-dev libibverbs1 libnl-3-200 libnl-route-3-200 libnuma-dev | |
| libnuma1 libopenmpi-dev libopenmpi2 libpsm-infinipath1 librdmacm1 | |
| ocl-icd-libopencl1 openmpi-bin openmpi-common | |
| 0 upgraded, 18 newly installed, 0 to remove and 8 not upgraded. | |
| Need to get 4617 kB of archives. | |
| After this operation, 18.4 MB of additional disk space will be used. | |
| Get:1 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libnuma1 amd64 2.0.11-2.1ubuntu0.1 [22.0 kB] | |
| Get:2 http://archive.ubuntu.com/ubuntu bionic/main amd64 libnl-3-200 amd64 3.2.29-0ubuntu3 [52.8 kB] | |
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| Get:6 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-5 [174 kB] | |
| Get:7 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 librdmacm1 amd64 17.1-1ubuntu0.2 [56.1 kB] | |
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| Selecting previously unselected package libnuma1:amd64. | |
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| update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/mpi (mpi) in auto mode | |
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| update-alternatives: warning: skip creation of /usr/share/man/man1/mpif90.1.gz because associated file /usr/share/man/man1/mpif90.openmpi.1.gz (of link group mpi) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpifort.1.gz because associated file /usr/share/man/man1/mpifort.openmpi.1.gz (of link group mpi) doesn't exist | |
| Setting up openmpi-bin (2.1.1-8) ... | |
| update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpirun.1.gz because associated file /usr/share/man/man1/mpirun.openmpi.1.gz (of link group mpirun) doesn't exist | |
| update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist | |
| Processing triggers for libc-bin (2.27-3ubuntu1) ... | |
| Requirement already up-to-date: pip in /opt/conda/envs/test/lib/python3.7/site-packages (20.0.2) | |
| Requirement already up-to-date: setuptools in /opt/conda/envs/test/lib/python3.7/site-packages (46.1.3.post20200330) | |
| running sdist | |
| running egg_info | |
| creating optuna.egg-info | |
| writing optuna.egg-info/PKG-INFO | |
| writing dependency_links to optuna.egg-info/dependency_links.txt | |
| writing entry points to optuna.egg-info/entry_points.txt | |
| writing requirements to optuna.egg-info/requires.txt | |
| writing top-level names to optuna.egg-info/top_level.txt | |
| writing manifest file 'optuna.egg-info/SOURCES.txt' | |
| reading manifest file 'optuna.egg-info/SOURCES.txt' | |
| reading manifest template 'MANIFEST.in' | |
| writing manifest file 'optuna.egg-info/SOURCES.txt' | |
| running check | |
| creating optuna-1.3.0 | |
| creating optuna-1.3.0/optuna | |
| creating optuna-1.3.0/optuna.egg-info | |
| creating optuna-1.3.0/optuna/importance | |
| creating optuna-1.3.0/optuna/integration | |
| creating optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| creating optuna-1.3.0/optuna/pruners | |
| creating optuna-1.3.0/optuna/samplers | |
| creating optuna-1.3.0/optuna/samplers/tpe | |
| creating optuna-1.3.0/optuna/storages | |
| creating optuna-1.3.0/optuna/storages/rdb | |
| creating optuna-1.3.0/optuna/storages/rdb/alembic | |
| creating optuna-1.3.0/optuna/storages/rdb/alembic/versions | |
| creating optuna-1.3.0/optuna/testing | |
| creating optuna-1.3.0/optuna/visualization | |
| creating optuna-1.3.0/tests | |
| creating optuna-1.3.0/tests/integration_tests | |
| creating optuna-1.3.0/tests/integration_tests/lightgbm_tuner_tests | |
| creating optuna-1.3.0/tests/pruners_tests | |
| creating optuna-1.3.0/tests/samplers_tests | |
| creating optuna-1.3.0/tests/samplers_tests/tpe_tests | |
| creating optuna-1.3.0/tests/storages_tests | |
| creating optuna-1.3.0/tests/storages_tests/rdb_tests | |
| creating optuna-1.3.0/tests/visualization_tests | |
| copying files to optuna-1.3.0... | |
| copying LICENSE -> optuna-1.3.0 | |
| copying MANIFEST.in -> optuna-1.3.0 | |
| copying README.md -> optuna-1.3.0 | |
| copying setup.cfg -> optuna-1.3.0 | |
| copying setup.py -> optuna-1.3.0 | |
| copying optuna/__init__.py -> optuna-1.3.0/optuna | |
| copying optuna/_experimental.py -> optuna-1.3.0/optuna | |
| copying optuna/_study_direction.py -> optuna-1.3.0/optuna | |
| copying optuna/_study_summary.py -> optuna-1.3.0/optuna | |
| copying optuna/cli.py -> optuna-1.3.0/optuna | |
| copying optuna/dashboard.py -> optuna-1.3.0/optuna | |
| copying optuna/distributions.py -> optuna-1.3.0/optuna | |
| copying optuna/exceptions.py -> optuna-1.3.0/optuna | |
| copying optuna/logging.py -> optuna-1.3.0/optuna | |
| copying optuna/progress_bar.py -> optuna-1.3.0/optuna | |
| copying optuna/structs.py -> optuna-1.3.0/optuna | |
| copying optuna/study.py -> optuna-1.3.0/optuna | |
| copying optuna/trial.py -> optuna-1.3.0/optuna | |
| copying optuna/type_checking.py -> optuna-1.3.0/optuna | |
| copying optuna/version.py -> optuna-1.3.0/optuna | |
| copying optuna.egg-info/PKG-INFO -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/SOURCES.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/dependency_links.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/entry_points.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/requires.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna.egg-info/top_level.txt -> optuna-1.3.0/optuna.egg-info | |
| copying optuna/importance/__init__.py -> optuna-1.3.0/optuna/importance | |
| copying optuna/importance/_base.py -> optuna-1.3.0/optuna/importance | |
| copying optuna/importance/_fanova.py -> optuna-1.3.0/optuna/importance | |
| copying optuna/integration/__init__.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/allennlp.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/chainer.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/chainermn.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/cma.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/fastai.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/keras.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/lightgbm.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/mlflow.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/mxnet.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/pytorch_ignite.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/pytorch_lightning.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/sklearn.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/skopt.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/tensorflow.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/tfkeras.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/xgboost.py -> optuna-1.3.0/optuna/integration | |
| copying optuna/integration/lightgbm_tuner/__init__.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| copying optuna/integration/lightgbm_tuner/alias.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| copying optuna/integration/lightgbm_tuner/optimize.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| copying optuna/integration/lightgbm_tuner/sklearn.py -> optuna-1.3.0/optuna/integration/lightgbm_tuner | |
| copying optuna/pruners/__init__.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/base.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/hyperband.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/median.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/nop.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/percentile.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/successive_halving.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/pruners/threshold.py -> optuna-1.3.0/optuna/pruners | |
| copying optuna/samplers/__init__.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/base.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/cmaes.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/grid.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/random.py -> optuna-1.3.0/optuna/samplers | |
| copying optuna/samplers/tpe/__init__.py -> optuna-1.3.0/optuna/samplers/tpe | |
| copying optuna/samplers/tpe/parzen_estimator.py -> optuna-1.3.0/optuna/samplers/tpe | |
| copying optuna/samplers/tpe/sampler.py -> optuna-1.3.0/optuna/samplers/tpe | |
| copying optuna/storages/__init__.py -> optuna-1.3.0/optuna/storages | |
| copying optuna/storages/base.py -> optuna-1.3.0/optuna/storages | |
| copying optuna/storages/in_memory.py -> optuna-1.3.0/optuna/storages | |
| copying optuna/storages/redis.py -> optuna-1.3.0/optuna/storages | |
| copying optuna/storages/rdb/__init__.py -> optuna-1.3.0/optuna/storages/rdb | |
| copying optuna/storages/rdb/alembic.ini -> optuna-1.3.0/optuna/storages/rdb | |
| copying optuna/storages/rdb/models.py -> optuna-1.3.0/optuna/storages/rdb | |
| copying optuna/storages/rdb/storage.py -> optuna-1.3.0/optuna/storages/rdb | |
| copying optuna/storages/rdb/alembic/env.py -> optuna-1.3.0/optuna/storages/rdb/alembic | |
| copying optuna/storages/rdb/alembic/script.py.mako -> optuna-1.3.0/optuna/storages/rdb/alembic | |
| copying optuna/storages/rdb/alembic/versions/v0.9.0.a.py -> optuna-1.3.0/optuna/storages/rdb/alembic/versions | |
| copying optuna/storages/rdb/alembic/versions/v1.2.0.a.py -> optuna-1.3.0/optuna/storages/rdb/alembic/versions | |
| copying optuna/storages/rdb/alembic/versions/v1.3.0.a.py -> optuna-1.3.0/optuna/storages/rdb/alembic/versions | |
| copying optuna/testing/__init__.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/distribution.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/integration.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/sampler.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/storage.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/testing/visualization.py -> optuna-1.3.0/optuna/testing | |
| copying optuna/visualization/__init__.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/contour.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/intermediate_values.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/optimization_history.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/parallel_coordinate.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/plotly_imports.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/slice.py -> optuna-1.3.0/optuna/visualization | |
| copying optuna/visualization/utils.py -> optuna-1.3.0/optuna/visualization | |
| copying tests/__init__.py -> optuna-1.3.0/tests | |
| copying tests/test_cli.py -> optuna-1.3.0/tests | |
| copying tests/test_dashboard.py -> optuna-1.3.0/tests | |
| copying tests/test_distributions.py -> optuna-1.3.0/tests | |
| copying tests/test_experimental.py -> optuna-1.3.0/tests | |
| copying tests/test_importance.py -> optuna-1.3.0/tests | |
| copying tests/test_logging.py -> optuna-1.3.0/tests | |
| copying tests/test_structs.py -> optuna-1.3.0/tests | |
| copying tests/test_study.py -> optuna-1.3.0/tests | |
| copying tests/test_trial.py -> optuna-1.3.0/tests | |
| copying tests/integration_tests/__init__.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_chainer.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_chainermn.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_cma.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_fastai.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_integration.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_keras.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_lightgbm.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_mlflow.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_mxnet.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_pytorch_ignite.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_pytorch_lightning.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_sampler.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_sklearn.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_skopt.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_tensorflow.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_tfkeras.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/test_xgboost.py -> optuna-1.3.0/tests/integration_tests | |
| copying tests/integration_tests/lightgbm_tuner_tests/__init__.py -> optuna-1.3.0/tests/integration_tests/lightgbm_tuner_tests | |
| copying tests/integration_tests/lightgbm_tuner_tests/test_alias.py -> optuna-1.3.0/tests/integration_tests/lightgbm_tuner_tests | |
| copying tests/integration_tests/lightgbm_tuner_tests/test_optimize.py -> optuna-1.3.0/tests/integration_tests/lightgbm_tuner_tests | |
| copying tests/pruners_tests/__init__.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_hyperband.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_median.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_nop.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_percentile.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_successive_halving.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/pruners_tests/test_threshold.py -> optuna-1.3.0/tests/pruners_tests | |
| copying tests/samplers_tests/__init__.py -> optuna-1.3.0/tests/samplers_tests | |
| copying tests/samplers_tests/test_cmaes.py -> optuna-1.3.0/tests/samplers_tests | |
| copying tests/samplers_tests/test_grid.py -> optuna-1.3.0/tests/samplers_tests | |
| copying tests/samplers_tests/test_samplers.py -> optuna-1.3.0/tests/samplers_tests | |
| copying tests/samplers_tests/tpe_tests/__init__.py -> optuna-1.3.0/tests/samplers_tests/tpe_tests | |
| copying tests/samplers_tests/tpe_tests/test_parzen_estimator.py -> optuna-1.3.0/tests/samplers_tests/tpe_tests | |
| copying tests/samplers_tests/tpe_tests/test_sampler.py -> optuna-1.3.0/tests/samplers_tests/tpe_tests | |
| copying tests/storages_tests/__init__.py -> optuna-1.3.0/tests/storages_tests | |
| copying tests/storages_tests/test_in_memory.py -> optuna-1.3.0/tests/storages_tests | |
| copying tests/storages_tests/test_storages.py -> optuna-1.3.0/tests/storages_tests | |
| copying tests/storages_tests/rdb_tests/__init__.py -> optuna-1.3.0/tests/storages_tests/rdb_tests | |
| copying tests/storages_tests/rdb_tests/test_models.py -> optuna-1.3.0/tests/storages_tests/rdb_tests | |
| copying tests/storages_tests/rdb_tests/test_storage.py -> optuna-1.3.0/tests/storages_tests/rdb_tests | |
| copying tests/visualization_tests/__init__.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_contour.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_intermediate_plot.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_optimization_history.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_parallel_coordinate.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_slice.py -> optuna-1.3.0/tests/visualization_tests | |
| copying tests/visualization_tests/test_utils.py -> optuna-1.3.0/tests/visualization_tests | |
| Writing optuna-1.3.0/setup.cfg | |
| creating dist | |
| Creating tar archive | |
| removing 'optuna-1.3.0' (and everything under it) | |
| Processing ./dist/optuna-1.3.0.tar.gz | |
| Collecting alembic | |
| Downloading alembic-1.4.2.tar.gz (1.1 MB) | |
| Installing build dependencies: started | |
| Installing build dependencies: finished with status 'done' | |
| Getting requirements to build wheel: started | |
| Getting requirements to build wheel: finished with status 'done' | |
| Preparing wheel metadata: started | |
| Preparing wheel metadata: finished with status 'done' | |
| Collecting cliff | |
| Downloading cliff-3.1.0-py3-none-any.whl (80 kB) | |
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| Downloading wcwidth-0.1.9-py2.py3-none-any.whl (19 kB) | |
| Building wheels for collected packages: optuna, alembic, PrettyTable, PyYAML, pyperclip | |
| Building wheel for optuna (setup.py): started | |
| Building wheel for optuna (setup.py): finished with status 'done' | |
| Created wheel for optuna: filename=optuna-1.3.0-py3-none-any.whl size=237053 sha256=7641c7c07248cba62e50848612e84c84979660dab70d6c910ef8d9affb0132ea | |
| Stored in directory: /root/.cache/pip/wheels/ef/27/32/303fb62ed98f5dbea0244e9130e4df50cd9a98edef9c9e6876 | |
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| Created wheel for alembic: filename=alembic-1.4.2-py2.py3-none-any.whl size=159543 sha256=60a08323c5db604dc6b180d12db3729649aef339d62f8c897c101e026d983074 | |
| Stored in directory: /root/.cache/pip/wheels/4e/b5/00/f93fe1c90b3d501774e91e2e99987f49d16019e40e4bd3afc3 | |
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| Stored in directory: /root/.cache/pip/wheels/8c/76/0b/eb9eb3da7e2335e3577e3f96a0ae9f74f206e26457bd1a2bc8 | |
| Building wheel for PyYAML (setup.py): started | |
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| Created wheel for PyYAML: filename=PyYAML-5.3.1-cp37-cp37m-linux_x86_64.whl size=44619 sha256=218185740b92efcc02ad7b214e98114de7d486893cc5de12d8170b10ddd71b42 | |
| Stored in directory: /root/.cache/pip/wheels/5e/03/1e/e1e954795d6f35dfc7b637fe2277bff021303bd9570ecea653 | |
| Building wheel for pyperclip (setup.py): started | |
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| Stored in directory: /root/.cache/pip/wheels/e5/5e/f7/441179ddf6ac56f36cb1d84d94f35beedd5da15986ce3d321d | |
| Successfully built optuna alembic PrettyTable PyYAML pyperclip | |
| Installing collected packages: six, python-dateutil, MarkupSafe, Mako, python-editor, sqlalchemy, alembic, PrettyTable, PyYAML, pyparsing, pyperclip, wcwidth, cmd2, pbr, stevedore, cliff, numpy, cmaes, colorlog, joblib, scipy, tqdm, optuna | |
| Successfully installed Mako-1.1.2 MarkupSafe-1.1.1 PrettyTable-0.7.2 PyYAML-5.3.1 alembic-1.4.2 cliff-3.1.0 cmaes-0.4.0 cmd2-0.8.9 colorlog-4.1.0 joblib-0.14.1 numpy-1.18.3 optuna-1.3.0 pbr-5.4.5 pyparsing-2.4.7 pyperclip-1.8.0 python-dateutil-2.8.1 python-editor-1.0.4 scipy-1.4.1 six-1.14.0 sqlalchemy-1.3.16 stevedore-1.32.0 tqdm-4.45.0 wcwidth-0.1.9 | |
| Looking in links: https://download.pytorch.org/whl/torch_stable.html | |
| Processing ./dist/optuna-1.3.0.tar.gz | |
| Requirement already satisfied: alembic in /opt/conda/envs/test/lib/python3.7/site-packages (from optuna==1.3.0) (1.4.2) | |
| Requirement already satisfied: cliff in /opt/conda/envs/test/lib/python3.7/site-packages (from optuna==1.3.0) (3.1.0) | |
| Requirement already satisfied: cmaes>=0.3.2 in /opt/conda/envs/test/lib/python3.7/site-packages (from optuna==1.3.0) (0.4.0) | |
| Requirement already satisfied: colorlog in /opt/conda/envs/test/lib/python3.7/site-packages (from optuna==1.3.0) (4.1.0) | |
| Requirement already satisfied: joblib in /opt/conda/envs/test/lib/python3.7/site-packages (from optuna==1.3.0) (0.14.1) | |
| Requirement already satisfied: numpy in /opt/conda/envs/test/lib/python3.7/site-packages (from optuna==1.3.0) (1.18.3) | |
| Requirement already satisfied: scipy!=1.4.0 in /opt/conda/envs/test/lib/python3.7/site-packages (from optuna==1.3.0) (1.4.1) | |
| Requirement already satisfied: sqlalchemy>=1.1.0 in /opt/conda/envs/test/lib/python3.7/site-packages (from optuna==1.3.0) (1.3.16) | |
| Requirement already satisfied: tqdm in /opt/conda/envs/test/lib/python3.7/site-packages (from optuna==1.3.0) (4.45.0) | |
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| Downloading https://download.pytorch.org/whl/cpu/torchvision-0.5.0%2Bcpu-cp37-cp37m-linux_x86_64.whl (5.4 MB) | |
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| Downloading tensorflow-2.1.0-cp37-cp37m-manylinux2010_x86_64.whl (421.8 MB) | |
| WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))': /simple/tensorflow-datasets/ | |
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| Collecting oauthlib>=3.0.0 | |
| Downloading oauthlib-3.1.0-py2.py3-none-any.whl (147 kB) | |
| Building wheels for collected packages: optuna, chainer, mpi4py, pytorch-lightning, querystring-parser, simplejson, prometheus-flask-exporter, databricks-cli, numpydoc, ftfy, nltk, parsimonious, word2number, jsonnet, overrides, bottleneck, nvidia-ml-py3, toolz, future, termcolor, absl-py, gast, wrapt, dill, promise, retrying, prometheus-client, tornado, locket, psutil, googleapis-common-protos, backcall, pyrsistent | |
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| Building wheel for chainer (setup.py): finished with status 'done' | |
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| Building wheel for mpi4py (setup.py): finished with status 'done' | |
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| Building wheel for pytorch-lightning (setup.py): finished with status 'done' | |
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| Building wheel for querystring-parser (setup.py): finished with status 'done' | |
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| Building wheel for simplejson (setup.py): finished with status 'done' | |
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| Building wheel for prometheus-flask-exporter (setup.py): started | |
| Building wheel for prometheus-flask-exporter (setup.py): finished with status 'done' | |
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| Building wheel for jsonnet (setup.py): finished with status 'done' | |
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| Building wheel for bottleneck (PEP 517): finished with status 'done' | |
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| Building wheel for nvidia-ml-py3 (setup.py): finished with status 'done' | |
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| Building wheel for absl-py (setup.py): finished with status 'done' | |
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| Building wheel for promise (setup.py): finished with status 'done' | |
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| Building wheel for retrying (setup.py): finished with status 'done' | |
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| Building wheel for prometheus-client (setup.py): finished with status 'done' | |
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| Building wheel for tornado (setup.py): finished with status 'done' | |
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| Building wheel for locket (setup.py): finished with status 'done' | |
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| Building wheel for psutil (setup.py): finished with status 'done' | |
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| Building wheel for googleapis-common-protos (setup.py): started | |
| Building wheel for googleapis-common-protos (setup.py): finished with status 'done' | |
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| Building wheel for backcall (setup.py): started | |
| Building wheel for backcall (setup.py): finished with status 'done' | |
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| Building wheel for pyrsistent (setup.py): started | |
| Building wheel for pyrsistent (setup.py): finished with status 'done' | |
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| Stored in directory: /root/.cache/pip/wheels/22/52/11/f0920f95c23ed7d2d0b05f2b7b2f4509e87a20cfe8ea43d987 | |
| Successfully built optuna chainer mpi4py pytorch-lightning querystring-parser simplejson prometheus-flask-exporter databricks-cli numpydoc ftfy nltk parsimonious word2number jsonnet overrides bottleneck nvidia-ml-py3 toolz future termcolor absl-py gast wrapt dill promise retrying prometheus-client tornado locket psutil googleapis-common-protos backcall pyrsistent | |
| ERROR: mlflow 1.7.2 has requirement alembic<=1.4.1, but you'll have alembic 1.4.2 which is incompatible. | |
| ERROR: mlflow 1.7.2 has requirement sqlalchemy<=1.3.13, but you'll have sqlalchemy 1.3.16 which is incompatible. | |
| ERROR: mxnet 1.6.0 has requirement graphviz<0.9.0,>=0.8.1, but you'll have graphviz 0.13.2 which is incompatible. | |
| ERROR: botocore 1.15.42 has requirement docutils<0.16,>=0.10, but you'll have docutils 0.16 which is incompatible. | |
| ERROR: pytorch-lightning 0.6.0 has requirement torchvision<0.5,>=0.4.0, but you'll have torchvision 0.5.0+cpu which is incompatible. | |
| ERROR: tensorflow 2.1.0 has requirement tensorboard<2.2.0,>=2.1.0, but you'll have tensorboard 2.2.1 which is incompatible. | |
| Installing collected packages: pytz, pandas, graphviz, retrying, plotly, kiwisolver, cycler, matplotlib, catboost, typing-extensions, filelock, protobuf, chainer, scikit-learn, lightgbm, querystring-parser, gorilla, chardet, urllib3, idna, requests, click, Jinja2, itsdangerous, Werkzeug, Flask, cloudpickle, entrypoints, websocket-client, docker, gunicorn, sqlparse, smmap, gitdb, gitpython, simplejson, prometheus-client, prometheus-flask-exporter, tabulate, configparser, databricks-cli, mlflow, mpi4py, mxnet, ipython-genutils, decorator, traitlets, pyzmq, tornado, jupyter-core, jupyter-client, attrs, zipp, importlib-metadata, pluggy, py, packaging, more-itertools, pytest, ptyprocess, pexpect, pickleshare, backcall, prompt-toolkit, pygments, parso, jedi, ipython, ipykernel, pyrsistent, jsonschema, nbformat, coverage, nbval, torch, pytorch-ignite, pillow, imageio, PyWavelets, networkx, scikit-image, torchvision, xgboost, docutils, sphinxcontrib-serializinghtml, sphinxcontrib-devhelp, sphinxcontrib-htmlhelp, babel, sphinxcontrib-qthelp, alabaster, sphinxcontrib-applehelp, imagesize, snowballstemmer, sphinxcontrib-jsmath, sphinx, numpydoc, ftfy, unidecode, regex, jmespath, botocore, s3transfer, boto3, pytorch-pretrained-bert, nltk, editdistance, flaky, greenlet, gevent, parsimonious, responses, jsonpickle, word2number, sentencepiece, pytorch-transformers, jsonnet, tensorboardX, conllu, overrides, flask-cors, blis, srsly, plac, cymem, preshed, murmurhash, wasabi, thinc, spacy, h5py, allennlp, bottleneck, nvidia-ml-py3, fastprogress, numexpr, soupsieve, beautifulsoup4, fastai, toolz, locket, partd, fsspec, dask, sortedcontainers, tblib, psutil, heapdict, zict, msgpack, distributed, multipledispatch, dask-glm, llvmlite, numba, dask-ml, keras-preprocessing, keras-applications, keras, grpcio, absl-py, markdown, pyasn1, rsa, pyasn1-modules, cachetools, google-auth, oauthlib, requests-oauthlib, google-auth-oauthlib, tensorboard-plugin-wit, tensorboard, future, pytorch-lightning, termcolor, opt-einsum, gast, google-pasta, wrapt, astor, tensorflow-estimator, tensorflow, googleapis-common-protos, tensorflow-metadata, dill, promise, tensorflow-datasets, optuna | |
| Attempting uninstall: optuna | |
| Found existing installation: optuna 1.3.0 | |
| Uninstalling optuna-1.3.0: | |
| Successfully uninstalled optuna-1.3.0 | |
| Successfully installed Flask-1.1.2 Jinja2-2.11.2 PyWavelets-1.1.1 Werkzeug-1.0.1 absl-py-0.9.0 alabaster-0.7.12 allennlp-0.9.0 astor-0.8.1 attrs-19.3.0 babel-2.8.0 backcall-0.1.0 beautifulsoup4-4.9.0 blis-0.2.4 boto3-1.12.42 botocore-1.15.42 bottleneck-1.3.2 cachetools-4.1.0 catboost-0.22 chainer-7.2.0 chardet-3.0.4 click-7.1.1 cloudpickle-1.3.0 configparser-5.0.0 conllu-1.3.1 coverage-5.1 cycler-0.10.0 cymem-2.0.3 dask-2.14.0 dask-glm-0.2.0 dask-ml-1.3.0 databricks-cli-0.10.0 decorator-4.4.2 dill-0.3.1.1 distributed-2.14.0 docker-4.2.0 docutils-0.16 editdistance-0.5.3 entrypoints-0.3 fastai-1.0.60 fastprogress-0.2.3 filelock-3.0.12 flaky-3.6.1 flask-cors-3.0.8 fsspec-0.7.2 ftfy-5.7 future-0.18.2 gast-0.2.2 gevent-1.5.0 gitdb-4.0.4 gitpython-3.1.1 google-auth-1.14.0 google-auth-oauthlib-0.4.1 google-pasta-0.2.0 googleapis-common-protos-1.51.0 gorilla-0.3.0 graphviz-0.13.2 greenlet-0.4.15 grpcio-1.28.1 gunicorn-20.0.4 h5py-2.10.0 heapdict-1.0.1 idna-2.9 imageio-2.8.0 imagesize-1.2.0 importlib-metadata-1.6.0 ipykernel-5.2.1 ipython-7.13.0 ipython-genutils-0.2.0 itsdangerous-1.1.0 jedi-0.17.0 jmespath-0.9.5 jsonnet-0.15.0 jsonpickle-1.4.1 jsonschema-3.2.0 jupyter-client-6.1.3 jupyter-core-4.6.3 keras-2.3.1 keras-applications-1.0.8 keras-preprocessing-1.1.0 kiwisolver-1.2.0 lightgbm-2.3.1 llvmlite-0.32.0 locket-0.2.0 markdown-3.2.1 matplotlib-3.2.1 mlflow-1.7.2 more-itertools-8.2.0 mpi4py-3.0.3 msgpack-1.0.0 multipledispatch-0.6.0 murmurhash-1.0.2 mxnet-1.6.0 nbformat-5.0.6 nbval-0.9.5 networkx-2.4 nltk-3.5 numba-0.49.0 numexpr-2.7.1 numpydoc-0.9.2 nvidia-ml-py3-7.352.0 oauthlib-3.1.0 opt-einsum-3.2.1 optuna-1.3.0 overrides-2.8.0 packaging-20.3 pandas-1.0.3 parsimonious-0.8.1 parso-0.7.0 partd-1.1.0 pexpect-4.8.0 pickleshare-0.7.5 pillow-7.1.1 plac-0.9.6 plotly-4.6.0 pluggy-0.13.1 preshed-2.0.1 prometheus-client-0.7.1 prometheus-flask-exporter-0.13.0 promise-2.3 prompt-toolkit-3.0.5 protobuf-3.11.3 psutil-5.7.0 ptyprocess-0.6.0 py-1.8.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pygments-2.6.1 pyrsistent-0.16.0 pytest-5.4.1 pytorch-ignite-0.3.0 pytorch-lightning-0.6.0 pytorch-pretrained-bert-0.6.2 pytorch-transformers-1.1.0 pytz-2019.3 pyzmq-19.0.0 querystring-parser-1.2.4 regex-2020.4.4 requests-2.23.0 requests-oauthlib-1.3.0 responses-0.10.14 retrying-1.3.3 rsa-4.0 s3transfer-0.3.3 scikit-image-0.16.2 scikit-learn-0.22.2.post1 sentencepiece-0.1.85 simplejson-3.17.0 smmap-3.0.2 snowballstemmer-2.0.0 sortedcontainers-2.1.0 soupsieve-2.0 spacy-2.1.9 sphinx-3.0.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.4 sqlparse-0.3.1 srsly-1.0.2 tabulate-0.8.7 tblib-1.6.0 tensorboard-2.2.1 tensorboard-plugin-wit-1.6.0.post3 tensorboardX-2.0 tensorflow-2.1.0 tensorflow-datasets-3.0.0 tensorflow-estimator-2.1.0 tensorflow-metadata-0.21.2 termcolor-1.1.0 thinc-7.0.8 toolz-0.10.0 torch-1.4.0+cpu torchvision-0.5.0+cpu tornado-6.0.4 traitlets-4.3.3 typing-extensions-3.7.4.2 unidecode-1.1.1 urllib3-1.25.9 wasabi-0.6.0 websocket-client-0.57.0 word2number-1.1 wrapt-1.12.1 xgboost-1.0.2 zict-2.0.0 zipp-3.1.0 | |
| Removing intermediate container 224bcd638e9f | |
| ---> deceefcf4680 | |
| Step 9/9 : COPY run.sh . | |
| ---> 567586561a31 | |
| Successfully built 567586561a31 | |
| Successfully tagged optuna-smly:3.7 |
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| FROM ubuntu:18.04 | |
| RUN apt-get update \ | |
| && apt-get install -y --no-install-recommends \ | |
| bc \ | |
| bzip2 \ | |
| ca-certificates \ | |
| curl \ | |
| git \ | |
| less \ | |
| libgdal-dev \ | |
| libssl-dev \ | |
| libffi-dev \ | |
| libncurses-dev \ | |
| libgl1 \ | |
| jq \ | |
| nfs-common \ | |
| parallel \ | |
| python-dev \ | |
| python-pip \ | |
| python-wheel \ | |
| python-setuptools \ | |
| tree \ | |
| unzip \ | |
| vim \ | |
| wget \ | |
| xterm \ | |
| cmake \ | |
| build-essential \ | |
| && apt-get clean \ | |
| && rm -rf /var/lib/apt/lists/* | |
| SHELL ["/bin/bash", "-c"] | |
| ENV PATH /opt/conda/bin:$PATH | |
| RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh -O ~/miniconda.sh && \ | |
| /bin/bash ~/miniconda.sh -b -p /opt/conda && \ | |
| rm ~/miniconda.sh && \ | |
| /opt/conda/bin/conda clean -tipsy && \ | |
| ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \ | |
| echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \ | |
| echo "conda activate base" >> ~/.bashrc | |
| WORKDIR /root/ | |
| RUN conda create -n test python=3.7 | |
| RUN source activate test &&\ | |
| wget https://github.com/smly/optuna/archive/4f1b4e3f95e7ace1627af869e9c484b46ae3fb63.zip -O optuna_hotfix.zip &&\ | |
| unzip optuna_hotfix.zip &&\ | |
| cd optuna-* &&\ | |
| apt-get update &&\ | |
| apt-get -y install openmpi-bin libopenmpi-dev &&\ | |
| python -m pip install --upgrade pip &&\ | |
| pip install --progress-bar off -U setuptools &&\ | |
| python setup.py sdist &&\ | |
| pip install --progress-bar off $(ls dist/*.tar.gz) &&\ | |
| python -c 'import optuna' &&\ | |
| pip install --progress-bar off $(ls dist/*.tar.gz)[example] -f https://download.pytorch.org/whl/torch_stable.html | |
| COPY run.sh . |
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| diff --git a/setup.py b/setup.py | |
| index 5d42e41..0641cab 100644 | |
| --- a/setup.py | |
| +++ b/setup.py | |
| @@ -74,6 +74,7 @@ def get_extras_require() -> Dict[str, List[str]]: | |
| "scikit-learn", | |
| "torch==1.4.0+cpu", | |
| "torchvision==0.5.0+cpu", | |
| + "llvmlite==0.31.0", | |
| "xgboost", | |
| ] | |
| + (["allennlp<1", "fastai<2"] if (3, 5) < sys.version_info[:2] < (3, 8) else []) |
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