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smoors/easybuild_test_report_21801_easybuilders_preasybuild-easyconfigs_20245125-UTC-18-51-32.md

Created November 25, 2024 18:51
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EasyBuild test report for easybuilders/easybuild-easyconfigs PR(s) #21801
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easybuild_test_report_21801_easybuilders_preasybuild-easyconfigs_20245125-UTC-18-51-32.md

Test report for PR(s) easybuilders/easybuild-easyconfigs#21801

Test result

Build succeeded for 5 out of 5 (5 easyconfigs in total)

Overview of tested easyconfigs (in order)

  • SUCCESS Archive-Zip-1.68-GCCcore-12.3.0.eb
  • SUCCESS Bio-DB-HTS-3.01-GCC-12.3.0.eb
  • SUCCESS Compress-Raw-Zlib-2.213-GCCcore-12.3.0.eb
  • SUCCESS DBD-mysql-4.050-GCC-12.3.0.eb
  • SUCCESS VEP-113.0-GCC-12.3.0.eb

Time info

  • start: Mon, 25 Nov 2024 18:44:53 +0000 (UTC)
  • end: Mon, 25 Nov 2024 18:51:32 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.9.5.dev0-rd700144108b3a5508659a4d957c7594d35033e62
  • easybuild-easyblocks version: 4.9.5.dev0-r57c0eaed8dc29e223fe68a75f7bf195cca0c2d04
  • command line:
eb --from-pr=21801 -df --robot --upload-test-report --installpath=/tmp/vsc10009/ebinstall/21801 --zip-logs=bzip2 --hooks=/data/brussel/100/vsc10009/build_tools/build_tools/src/build_tools/hooks_hydra.py -l
  • full configuration (includes defaults):
--accept-eula-for='CUDA'
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/user/brussel/100/vsc10009/.local/easybuild/containers'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-backup-patched-files
--disable-check-conflicts
--disable-check-contrib
--disable-check-eb-deps
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-ignore-test-failure
--disable-info
--disable-insecure-download
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-moduleclass-copy
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-parallel-extensions-install
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sanity-check-only
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-silence-hook-trigger
--disable-skip
--disable-skip-extensions
--disable-skip-sanity-check
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-unit-testing-mode
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--download-timeout='10'
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--extra-source-urls=''
--filter-rpath-sanity-libs='libcuda.so,libcuda.so.1,libnvidia-ml.so,libnvidia-ml.so.1'
--fixed-installdir-naming-scheme
--force
--from-pr='21801'
--generate-devel-module
--git-working-dirs-path='/scratch/brussel/100/vsc10009'
--github-user='smoors'
--hooks='/data/brussel/100/vsc10009/build_tools/build_tools/src/build_tools/hooks_hydra.py'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/tmp/vsc10009/ebinstall/21801'
--job-backend='GC3Pie'
--job-eb-cmd='eb'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/rhea/scratch/brussel/vo/000/bvo00005/vsc10009/easynew/test/21801'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--logtostdout
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,ai,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--output-style='auto'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/user/brussel/100/vsc10009/.local/easybuild/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--repository='FileRepository'
--repositorypath='/tmp'
--robot-paths=''
--robot='/scratch/brussel/100/vsc10009/easybuild-easyconfigs/easybuild/easyconfigs'
--show-progress-bar
--silence-deprecation-warnings=''
--sourcepath='/scratch/brussel/vo/000/bvo00005/vsc10009/sources:/apps/brussel/sources:/apps/gent/source'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--test-report-env-filter='^SSH|USER|HOSTNAME|UID|.*COOKIE.*'
--trace
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'
--zip-logs='bzip2'

System info

  • core count: 4
  • cpu arch: x86_64
  • cpu arch name: skylake_avx512
  • cpu model: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz
  • cpu speed: 3700.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-redhat-linux; Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.rockylinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 8.5.0 20210514 (Red Hat 8.5.0-22) (GCC) ;
  • glibc version: 2.28
  • hostname: node300.hydra.os
  • os name: Rocky Linux
  • os type: Linux
  • os version: 8.10
  • platform name: x86_64-unknown-linux
  • python version: 3.6.8 (default, Sep 24 2024, 09:44:46) ; [GCC 8.5.0 20210514 (Red Hat 8.5.0-22)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python
  • total memory: 191765

List of loaded modules

  • (none)

Environment

APPTAINER_CACHEDIR = /tmp/vsc10009/apptainer_cachedir
BACKUP_MODULEPATH = /apps/brussel/RL8/skylake/modules/2024a/all:/apps/brussel/RL8/skylake/modules/2023a/all:/apps/brussel/RL8/skylake/modules/2022a/all:/apps/brussel/RL8/skylake/modules/system/all:/etc/modulefiles/vsc
BASHRC = 1
BASH_ENV = /usr/share/lmod/lmod/init/bash
BASH_FUNC_ml%% = () {  eval "$($LMOD_DIR/ml_cmd "$@")"
}
BASH_FUNC_mldir%% = () {  if [ $# -eq 0 ]; then
 echo 'specify 1 or more dirs in $VSC_SCRATCH_VO_USER/ebtest/ to be added to $MODULEPATH';
 echo;
 else
 if [ "$1" == "reset" ]; then
 if [ ! -z "$BACKUP_MODULEPATH" ]; then
 export MODULEPATH=$BACKUP_MODULEPATH;
 else
 echo BACKUP_MODULEPATH not defined;
 fi;
 else
 for i in "$@";
 do
 i=$(basename $(readlink -m $i));
 extrapath=$VSC_SCRATCH_VO_USER/ebtest/$i/modules/all;
 if [ ! -d "$extrapath" ]; then
 echo "warning: $extrapath does not exist";
 fi;
 MODULEPATH=$extrapath:$MODULEPATH;
 done;
 export MODULEPATH;
 fi;
 fi;
 echo $MODULEPATH | tr ":" "\n" | awk '$0!=""{print}'
}
BASH_FUNC_module%% = () {  if [ -z "${LMOD_SH_DBG_ON+x}" ]; then
 case "$-" in 
 *v*x*)
 __lmod_sh_dbg='vx'
 ;;
 *v*)
 __lmod_sh_dbg='v'
 ;;
 *x*)
 __lmod_sh_dbg='x'
 ;;
 esac;
 fi;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 set +$__lmod_sh_dbg;
 echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output" 1>&2;
 fi;
 eval "$($LMOD_CMD shell "$@")" && eval "$(${LMOD_SETTARG_CMD:-:} -s sh)";
 __lmod_my_status=$?;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 echo "Shell debugging restarted" 1>&2;
 set -$__lmod_sh_dbg;
 fi;
 unset __lmod_sh_dbg;
 return $__lmod_my_status
}
BASH_FUNC_which%% = () {  ( alias;
 eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@
}
CUDA_DEVICE_ORDER = PCI_BUS_ID
DEBUGINFOD_URLS = https://debuginfod.centos.org/ 
EASYBUILD_ACCEPT_EULA_FOR = CUDA
EASYBUILD_BUILDPATH = /tmp
EASYBUILD_GIT_WORKING_DIRS_PATH = /scratch/brussel/100/vsc10009
EASYBUILD_REPOSITORYPATH = /tmp
EASYBUILD_SOURCEPATH = /scratch/brussel/vo/000/bvo00005/vsc10009/sources:/apps/brussel/sources:/apps/gent/source
EASYBUILD_TEST_REPORT_ENV_FILTER = ^SSH|USER|HOSTNAME|UID|.*COOKIE.*
EASYBUILD_TRACE = True
EB_PYTHON = python3
EB_SCRIPT_PATH = /scratch/brussel/100/vsc10009/easybuild-framework/eb
ENVIRONMENT = BATCH
FANCYLOGGER_IGNORE_MPI4PY = 1
FPATH = /usr/share/lmod/lmod/init/ksh_funcs
GIT_PS1_SHOWDIRTYSTATE = 1
GIT_PS1_SHOWUNTRACKEDFILES = 1
HISTCONTROL = ignoredups
HISTFILESIZE = 100000
HISTSIZE = 100000
HOME = /user/brussel/100/vsc10009
HYDRA_BOOTSTRAP = slurm
HYDRA_LAUNCHER_EXTRA_ARGS = --external-launcher
I_MPI_HYDRA_BOOTSTRAP = slurm
I_MPI_HYDRA_BOOTSTRAP_EXEC_EXTRA_ARGS = --external-launcher
JULIA_DEPOT_PATH = /scratch/brussel/100/vsc10009/.julia
LANG = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SYSTEM_NAME = hydra-skylake
LMOD_VERSION = 8.7.53
LMOD_sys = Linux
LOGNAME = vsc10009
LS_COLORS = rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36::*.eb=33:*.out=90:*.patch=32
MAIL = /var/spool/mail/vsc10009
MANPATH = /usr/share/lmod/lmod/share/man:
MODULEPATH = /apps/brussel/RL8/skylake/modules/2024a/all:/apps/brussel/RL8/skylake/modules/2023a/all:/apps/brussel/RL8/skylake/modules/2022a/all:/apps/brussel/RL8/skylake/modules/system/all:/etc/modulefiles/vsc
MODULEPATH_ROOT = /usr/share/modulefiles
MODULESHOME = /usr/share/lmod/lmod
OMPI_MCA_plm_slurm_args = --external-launcher
PATH = /usr/bin:/scratch/brussel/100/vsc10009/easybuild-framework:/user/brussel/100/vsc10009/progs:/user/brussel/100/vsc10009/.local/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin
PRTE_MCA_plm_slurm_args = --external-launcher
PWD = /rhea/scratch/brussel/vo/000/bvo00005/vsc10009/easynew/test/21801
PYTHONOPTIMIZE = 1
PYTHONPATH = /scratch/brussel/100/vsc10009/easybuild-framework:/scratch/brussel/100/vsc10009/easybuild-easyblocks:/scratch/brussel/100/vsc10009/easybuild-easyconfigs:/scratch/brussel/100/vsc10009/easybuild-framework:/scratch/brussel/100/vsc10009/easybuild-easyblocks:/scratch/brussel/100/vsc10009/easybuild-easyconfigs:
SHELL = /bin/bash
SHLVL = 2
SLURMD_NODENAME = node300
SLURM_CLUSTER_NAME = hydra
SLURM_CONF = /var/spool/slurm/slurmd/conf-cache/slurm.conf
SLURM_CPUS_ON_NODE = 4
SLURM_EXPORT_ENV = HOME,USER,TERM,PATH=/bin:/sbin
SLURM_GPUS_PER_NODE = 0
SLURM_GTIDS = 0
SLURM_JOBID = 10202553
SLURM_JOB_ACCOUNT = bvo00005
SLURM_JOB_CPUS_PER_NODE = 4
SLURM_JOB_END_TIME = 1732603482
SLURM_JOB_GID = 2510009
SLURM_JOB_ID = 10202553
SLURM_JOB_NAME = 21801
SLURM_JOB_NODELIST = node300
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = skylake
SLURM_JOB_QOS = normal
SLURM_JOB_START_TIME = 1732560282
SLURM_LOCALID = 0
SLURM_MEM_PER_CPU = 4096
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = node300
SLURM_NPROCS = 4
SLURM_NTASKS = 4
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_SCRIPT_CONTEXT = prolog_task
SLURM_SUBMIT_DIR = /rhea/scratch/brussel/vo/000/bvo00005/vsc10009/easynew/test/21801
SLURM_SUBMIT_HOST = login1.cerberus.os
SLURM_TASKS_PER_NODE = 4
SLURM_TASK_PID = 3809329
SLURM_TOPOLOGY_ADDR = .others.node300
SLURM_TOPOLOGY_ADDR_PATTERN = switch.switch.node
S_COLORS = auto
TERM = screen-256color
TMPDIR = /tmp
UCX_TLS = tcp,sm,self
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = skylake
VSC_ARCH_SUFFIX = 
VSC_DATA = /data/brussel/100/vsc10009
VSC_DATA_VO = /data/brussel/vo/000/bvo00005
VSC_DATA_VO_BRUSSEL = /data/brussel/vo/000/bvo00005
VSC_DEFAULT_CLUSTER_MODULE = hydra
VSC_HOME = /user/brussel/100/vsc10009
VSC_INSTITUTE = brussel
VSC_INSTITUTE_CLUSTER = hydra
VSC_INSTITUTE_LOCAL = brussel
VSC_OS_LOCAL = RL8
VSC_SCRATCH = /scratch/brussel/100/vsc10009
VSC_SCRATCH_CLUSTER = /tmp
VSC_SCRATCH_NODE = /tmp
VSC_SCRATCH_RHEA = /rhea/scratch/brussel/100/vsc10009
VSC_SCRATCH_RHEA_VO = /rhea/scratch/brussel/vo/000/bvo00005
VSC_SCRATCH_SITE = /scratch/brussel/100/vsc10009
VSC_SCRATCH_VO = /scratch/brussel/vo/000/bvo00005
VSC_VO = bvo00005
VSC_VO_BRUSSEL = bvo00005
WORKDIR = /scratch/brussel/100/vsc10009
XDG_RUNTIME_DIR = /dev/shm/vsc10009
_ = /usr/bin/python3
_ModuleTable001_ = 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
_ModuleTable002_ = a2UvbW9kdWxlcy8yMDI0YS9hbGw6L2FwcHMvYnJ1c3NlbC9STDgvc2t5bGFrZS9tb2R1bGVzLzIwMjNhL2FsbDovYXBwcy9icnVzc2VsL1JMOC9za3lsYWtlL21vZHVsZXMvMjAyMmEvYWxsOi9hcHBzL2JydXNzZWwvUkw4L3NreWxha2UvbW9kdWxlcy9zeXN0ZW0vYWxsOi9ldGMvbW9kdWxlZmlsZXMvdnNjIiwKfQo=
_ModuleTable_Sz_ = 2
__LMOD_REF_COUNT_MODULEPATH = /apps/brussel/RL8/skylake/modules/2024a/all:1;/apps/brussel/RL8/skylake/modules/2023a/all:1;/apps/brussel/RL8/skylake/modules/2022a/all:1;/apps/brussel/RL8/skylake/modules/system/all:1;/etc/modulefiles/vsc:1
bash_profile = bash_profile
which_declare = declare -f
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