Import Metadata from MassBank DataDump to FIZ-OAI provider

MassBank2OAI

#!/usr/bin/env bash

export BACKEND=http://localhost:8081/oai-backend

jq -c '.[]' DataDump-IPB.jsonld | \
while read i; do

IDENTIFIER=`echo "$i" | jq '.identifier'`

(
cat <<EOF
<json xmlns="http://denbi.de/schemas/json-container">
<![CDATA[
EOF

echo "$i"

cat <<EOF
]]>
</json>
EOF
) | curl -v -X POST -H 'Content-Type: multipart/form-data' \
  -i "$BACKEND/item"  \
  -F "item={\"identifier\":$IDENTIFIER,\"deleteFlag\":false,\"ingestFormat\":\"json_container\"};type=application/json" \
  -F content=@- ;\

done # while read