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@soyfrien
Created November 15, 2019 18:10
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louis@elvis:/opt/SingularityImages/github/C-PAC$ sudo docker build -t c-pac .
Sending build context to Docker daemon 34.52MB
Step 1/46 : FROM neurodebian:xenial-non-free
xenial-non-free: Pulling from library/neurodebian
e80174c8b43b: Pull complete
d1072db285cc: Pull complete
858453671e67: Pull complete
3d07b1124f98: Pull complete
7f9a26d0b8c4: Pull complete
c1a6f63b46b1: Pull complete
bf157527c982: Pull complete
03b3d90bd778: Pull complete
daeaae273063: Pull complete
Digest: sha256:53cf0171d414a621be497198da2e93369f7dfb0f5c7e17c5deae5236e1e35a06
Status: Downloaded newer image for neurodebian:xenial-non-free
---> fbe374a738b3
Step 2/46 : MAINTAINER The C-PAC Team <cnl@childmind.org>
---> Running in 380343f215a2
Removing intermediate container 380343f215a2
---> 6735384961c1
Step 3/46 : RUN apt-get update
---> Running in 961f4c076711
Get:1 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB]
Get:2 http://neuro.debian.net/debian xenial InRelease [18.4 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial InRelease [247 kB]
Get:4 http://neuro.debian.net/debian data InRelease [25.7 kB]
Get:5 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [1002 kB]
Get:6 http://security.ubuntu.com/ubuntu xenial-security/restricted amd64 Packages [12.7 kB]
Get:7 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [590 kB]
Get:8 http://neuro.debian.net/debian xenial/main amd64 Packages [101 kB]
Get:9 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [6283 B]
Get:10 http://neuro.debian.net/debian xenial/contrib amd64 Packages [16.5 kB]
Get:11 http://neuro.debian.net/debian xenial/non-free amd64 Packages [4740 B]
Get:12 http://neuro.debian.net/debian data/main amd64 Packages [6308 B]
Get:13 http://neuro.debian.net/debian data/non-free amd64 Packages [6106 B]
Get:14 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1558 kB]
Get:17 http://archive.ubuntu.com/ubuntu xenial/restricted amd64 Packages [14.1 kB]
Get:18 http://archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [9827 kB]
Get:19 http://archive.ubuntu.com/ubuntu xenial/multiverse amd64 Packages [176 kB]
Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [1379 kB]
Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/restricted amd64 Packages [13.1 kB]
Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [994 kB]
Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [19.3 kB]
Get:24 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [7942 B]
Get:25 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [8807 B]
Fetched 16.4 MB in 5s (3113 kB/s)
Reading package lists...
Removing intermediate container 961f4c076711
---> 9d9b38def7a9
Step 4/46 : RUN apt-get install -y curl && curl -sL https://deb.nodesource.com/setup_11.x | bash - && apt-get install -y nodejs
---> Running in 5ffeda407c70
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
ca-certificates krb5-locales libasn1-8-heimdal libcurl3-gnutls libffi6
libgmp10 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal
libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal
libidn11 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3
libkrb5support0 libldap-2.4-2 libnettle6 libp11-kit0 libroken18-heimdal
librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsqlite3-0
libssl1.0.0 libtasn1-6 libwind0-heimdal openssl
Suggested packages:
gnutls-bin krb5-doc krb5-user libsasl2-modules-otp libsasl2-modules-ldap
libsasl2-modules-sql libsasl2-modules-gssapi-mit
| libsasl2-modules-gssapi-heimdal
The following NEW packages will be installed:
ca-certificates curl krb5-locales libasn1-8-heimdal libcurl3-gnutls libffi6
libgmp10 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal
libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal
libidn11 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3
libkrb5support0 libldap-2.4-2 libnettle6 libp11-kit0 libroken18-heimdal
librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsqlite3-0
libssl1.0.0 libtasn1-6 libwind0-heimdal openssl
0 upgraded, 34 newly installed, 0 to remove and 2 not upgraded.
Need to get 5346 kB of archives.
After this operation, 19.0 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libffi6 amd64 3.2.1-4 [17.8 kB]
Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnettle6 amd64 3.2-1ubuntu0.16.04.1 [93.5 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhogweed4 amd64 3.2-1ubuntu0.16.04.1 [136 kB]
Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libidn11 amd64 1.32-3ubuntu1.2 [46.5 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libp11-kit0 amd64 0.23.2-5~ubuntu16.04.1 [105 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtasn1-6 amd64 4.7-3ubuntu0.16.04.3 [43.5 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgnutls30 amd64 3.4.10-4ubuntu1.5 [548 kB]
Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsqlite3-0 amd64 3.11.0-1ubuntu1.2 [397 kB]
Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu4.15 [1084 kB]
Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssl amd64 1.0.2g-1ubuntu4.15 [492 kB]
Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates all 20170717~16.04.2 [167 kB]
Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 krb5-locales all 1.13.2+dfsg-5ubuntu2.1 [13.6 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libroken18-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [41.4 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasn1-8-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [174 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5support0 amd64 1.13.2+dfsg-5ubuntu2.1 [31.2 kB]
Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libk5crypto3 amd64 1.13.2+dfsg-5ubuntu2.1 [81.3 kB]
Get:18 http://archive.ubuntu.com/ubuntu xenial/main amd64 libkeyutils1 amd64 1.5.9-8ubuntu1 [9904 B]
Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-3 amd64 1.13.2+dfsg-5ubuntu2.1 [273 kB]
Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi-krb5-2 amd64 1.13.2+dfsg-5ubuntu2.1 [120 kB]
Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhcrypto4-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [85.0 kB]
Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimbase1-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [29.3 kB]
Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libwind0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [47.8 kB]
Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libhx509-5-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [107 kB]
Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libkrb5-26-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [202 kB]
Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libheimntlm0-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [15.1 kB]
Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgssapi3-heimdal amd64 1.7~git20150920+dfsg-4ubuntu1.16.04.1 [96.1 kB]
Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-14ubuntu0.1 [14.5 kB]
Get:29 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-14ubuntu0.1 [48.6 kB]
Get:30 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu3.7 [160 kB]
Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d-1ubuntu0.1 [54.4 kB]
Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3-gnutls amd64 7.47.0-1ubuntu2.14 [184 kB]
Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libsasl2-modules amd64 2.1.26.dfsg1-14ubuntu0.1 [47.5 kB]
Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 curl amd64 7.47.0-1ubuntu2.14 [139 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 5346 kB in 11s (450 kB/s)
Selecting previously unselected package libffi6:amd64.
(Reading database ... 4798 files and directories currently installed.)
Preparing to unpack .../libffi6_3.2.1-4_amd64.deb ...
Unpacking libffi6:amd64 (3.2.1-4) ...
Selecting previously unselected package libgmp10:amd64.
Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ...
Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ...
Selecting previously unselected package libnettle6:amd64.
Preparing to unpack .../libnettle6_3.2-1ubuntu0.16.04.1_amd64.deb ...
Unpacking libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ...
Selecting previously unselected package libhogweed4:amd64.
Preparing to unpack .../libhogweed4_3.2-1ubuntu0.16.04.1_amd64.deb ...
Unpacking libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ...
Selecting previously unselected package libidn11:amd64.
Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ...
Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ...
Selecting previously unselected package libp11-kit0:amd64.
Preparing to unpack .../libp11-kit0_0.23.2-5~ubuntu16.04.1_amd64.deb ...
Unpacking libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ...
Selecting previously unselected package libtasn1-6:amd64.
Preparing to unpack .../libtasn1-6_4.7-3ubuntu0.16.04.3_amd64.deb ...
Unpacking libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ...
Selecting previously unselected package libgnutls30:amd64.
Preparing to unpack .../libgnutls30_3.4.10-4ubuntu1.5_amd64.deb ...
Unpacking libgnutls30:amd64 (3.4.10-4ubuntu1.5) ...
Selecting previously unselected package libsqlite3-0:amd64.
Preparing to unpack .../libsqlite3-0_3.11.0-1ubuntu1.2_amd64.deb ...
Unpacking libsqlite3-0:amd64 (3.11.0-1ubuntu1.2) ...
Selecting previously unselected package libssl1.0.0:amd64.
Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu4.15_amd64.deb ...
Unpacking libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ...
Selecting previously unselected package openssl.
Preparing to unpack .../openssl_1.0.2g-1ubuntu4.15_amd64.deb ...
Unpacking openssl (1.0.2g-1ubuntu4.15) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../ca-certificates_20170717~16.04.2_all.deb ...
Unpacking ca-certificates (20170717~16.04.2) ...
Selecting previously unselected package krb5-locales.
Preparing to unpack .../krb5-locales_1.13.2+dfsg-5ubuntu2.1_all.deb ...
Unpacking krb5-locales (1.13.2+dfsg-5ubuntu2.1) ...
Selecting previously unselected package libroken18-heimdal:amd64.
Preparing to unpack .../libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
Unpacking libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Selecting previously unselected package libasn1-8-heimdal:amd64.
Preparing to unpack .../libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
Unpacking libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Selecting previously unselected package libkrb5support0:amd64.
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Unpacking libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
Selecting previously unselected package libk5crypto3:amd64.
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Unpacking libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
Selecting previously unselected package libkeyutils1:amd64.
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Unpacking libkeyutils1:amd64 (1.5.9-8ubuntu1) ...
Selecting previously unselected package libkrb5-3:amd64.
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Unpacking libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
Selecting previously unselected package libgssapi-krb5-2:amd64.
Preparing to unpack .../libgssapi-krb5-2_1.13.2+dfsg-5ubuntu2.1_amd64.deb ...
Unpacking libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
Selecting previously unselected package libhcrypto4-heimdal:amd64.
Preparing to unpack .../libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
Unpacking libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Selecting previously unselected package libheimbase1-heimdal:amd64.
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Unpacking libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Selecting previously unselected package libwind0-heimdal:amd64.
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Unpacking libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Selecting previously unselected package libhx509-5-heimdal:amd64.
Preparing to unpack .../libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
Unpacking libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Selecting previously unselected package libkrb5-26-heimdal:amd64.
Preparing to unpack .../libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
Unpacking libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Selecting previously unselected package libheimntlm0-heimdal:amd64.
Preparing to unpack .../libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
Unpacking libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Selecting previously unselected package libgssapi3-heimdal:amd64.
Preparing to unpack .../libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ...
Unpacking libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Selecting previously unselected package libsasl2-modules-db:amd64.
Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-14ubuntu0.1_amd64.deb ...
Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
Selecting previously unselected package libsasl2-2:amd64.
Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-14ubuntu0.1_amd64.deb ...
Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
Selecting previously unselected package libldap-2.4-2:amd64.
Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu3.7_amd64.deb ...
Unpacking libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.7) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d-1ubuntu0.1_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ...
Selecting previously unselected package libcurl3-gnutls:amd64.
Preparing to unpack .../libcurl3-gnutls_7.47.0-1ubuntu2.14_amd64.deb ...
Unpacking libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.14) ...
Selecting previously unselected package libsasl2-modules:amd64.
Preparing to unpack .../libsasl2-modules_2.1.26.dfsg1-14ubuntu0.1_amd64.deb ...
Unpacking libsasl2-modules:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
Selecting previously unselected package curl.
Preparing to unpack .../curl_7.47.0-1ubuntu2.14_amd64.deb ...
Unpacking curl (7.47.0-1ubuntu2.14) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Setting up libffi6:amd64 (3.2.1-4) ...
Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ...
Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ...
Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ...
Setting up libidn11:amd64 (1.32-3ubuntu1.2) ...
Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ...
Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ...
Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.5) ...
Setting up libsqlite3-0:amd64 (3.11.0-1ubuntu1.2) ...
Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu4.15) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Setting up openssl (1.0.2g-1ubuntu4.15) ...
Setting up ca-certificates (20170717~16.04.2) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.22.1 /usr/local/share/perl/5.22.1 /usr/lib/x86_64-linux-gnu/perl5/5.22 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.22 /usr/share/perl/5.22 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Setting up krb5-locales (1.13.2+dfsg-5ubuntu2.1) ...
Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ...
Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ...
Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ...
Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.7) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ...
Setting up libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.14) ...
Setting up libsasl2-modules:amd64 (2.1.26.dfsg1-14ubuntu0.1) ...
Setting up curl (7.47.0-1ubuntu2.14) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Processing triggers for ca-certificates (20170717~16.04.2) ...
Updating certificates in /etc/ssl/certs...
148 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
## Installing the NodeSource Node.js 11.x repo...
## Populating apt-get cache...
+ apt-get update
Hit:1 http://neuro.debian.net/debian xenial InRelease
Hit:2 http://neuro.debian.net/debian data InRelease
Hit:3 http://archive.ubuntu.com/ubuntu xenial InRelease
Get:4 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB]
Hit:5 http://archive.ubuntu.com/ubuntu xenial-updates InRelease
Hit:6 http://archive.ubuntu.com/ubuntu xenial-backports InRelease
Fetched 109 kB in 0s (125 kB/s)
Reading package lists...
## Installing packages required for setup: apt-transport-https lsb-release...
+ apt-get install -y apt-transport-https lsb-release > /dev/null 2>&1
## Confirming "xenial" is supported...
+ curl -sLf -o /dev/null 'https://deb.nodesource.com/node_11.x/dists/xenial/Release'
## Adding the NodeSource signing key to your keyring...
+ curl -s https://deb.nodesource.com/gpgkey/nodesource.gpg.key | apt-key add -
OK
## Creating apt sources list file for the NodeSource Node.js 11.x repo...
+ echo 'deb https://deb.nodesource.com/node_11.x xenial main' > /etc/apt/sources.list.d/nodesource.list
+ echo 'deb-src https://deb.nodesource.com/node_11.x xenial main' >> /etc/apt/sources.list.d/nodesource.list
## Running `apt-get update` for you...
+ apt-get update
Hit:1 http://neuro.debian.net/debian xenial InRelease
Hit:2 http://neuro.debian.net/debian data InRelease
Get:3 https://deb.nodesource.com/node_11.x xenial InRelease [4584 B]
Get:4 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB]
Hit:5 http://archive.ubuntu.com/ubuntu xenial InRelease
Hit:6 http://archive.ubuntu.com/ubuntu xenial-updates InRelease
Hit:7 http://archive.ubuntu.com/ubuntu xenial-backports InRelease
Get:8 https://deb.nodesource.com/node_11.x xenial/main amd64 Packages [768 B]
Fetched 115 kB in 1s (114 kB/s)
Reading package lists...
## Run `sudo apt-get install -y nodejs` to install Node.js 11.x and npm
## You may also need development tools to build native addons:
sudo apt-get install gcc g++ make
## To install the Yarn package manager, run:
curl -sL https://dl.yarnpkg.com/debian/pubkey.gpg | sudo apt-key add -
echo "deb https://dl.yarnpkg.com/debian/ stable main" | sudo tee /etc/apt/sources.list.d/yarn.list
sudo apt-get update && sudo apt-get install yarn
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib python
python-minimal python2.7 python2.7-minimal
Suggested packages:
python-doc python-tk python2.7-doc binutils binfmt-support
The following NEW packages will be installed:
libpython-stdlib libpython2.7-minimal libpython2.7-stdlib nodejs python
python-minimal python2.7 python2.7-minimal
0 upgraded, 8 newly installed, 0 to remove and 2 not upgraded.
Need to get 20.0 MB of archives.
After this operation, 94.4 MB of additional disk space will be used.
Get:1 https://deb.nodesource.com/node_11.x xenial/main amd64 nodejs amd64 11.15.0-1nodesource1 [16.2 MB]
Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-minimal amd64 2.7.12-1ubuntu0~16.04.9 [338 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7-minimal amd64 2.7.12-1ubuntu0~16.04.9 [1262 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-minimal amd64 2.7.12-1~16.04 [28.1 kB]
Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython2.7-stdlib amd64 2.7.12-1ubuntu0~16.04.9 [1884 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python2.7 amd64 2.7.12-1ubuntu0~16.04.9 [224 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython-stdlib amd64 2.7.12-1~16.04 [7768 B]
Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 python amd64 2.7.12-1~16.04 [137 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 20.0 MB in 29s (677 kB/s)
Selecting previously unselected package libpython2.7-minimal:amd64.
(Reading database ... 6333 files and directories currently installed.)
Preparing to unpack .../libpython2.7-minimal_2.7.12-1ubuntu0~16.04.9_amd64.deb ...
Unpacking libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.9) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../python2.7-minimal_2.7.12-1ubuntu0~16.04.9_amd64.deb ...
Unpacking python2.7-minimal (2.7.12-1ubuntu0~16.04.9) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../python-minimal_2.7.12-1~16.04_amd64.deb ...
Unpacking python-minimal (2.7.12-1~16.04) ...
Selecting previously unselected package libpython2.7-stdlib:amd64.
Preparing to unpack .../libpython2.7-stdlib_2.7.12-1ubuntu0~16.04.9_amd64.deb ...
Unpacking libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.9) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../python2.7_2.7.12-1ubuntu0~16.04.9_amd64.deb ...
Unpacking python2.7 (2.7.12-1ubuntu0~16.04.9) ...
Selecting previously unselected package libpython-stdlib:amd64.
Preparing to unpack .../libpython-stdlib_2.7.12-1~16.04_amd64.deb ...
Unpacking libpython-stdlib:amd64 (2.7.12-1~16.04) ...
Processing triggers for mime-support (3.59ubuntu1) ...
Setting up libpython2.7-minimal:amd64 (2.7.12-1ubuntu0~16.04.9) ...
Setting up python2.7-minimal (2.7.12-1ubuntu0~16.04.9) ...
Linking and byte-compiling packages for runtime python2.7...
Setting up python-minimal (2.7.12-1~16.04) ...
Selecting previously unselected package python.
(Reading database ... 7080 files and directories currently installed.)
Preparing to unpack .../python_2.7.12-1~16.04_amd64.deb ...
Unpacking python (2.7.12-1~16.04) ...
Selecting previously unselected package nodejs.
Preparing to unpack .../nodejs_11.15.0-1nodesource1_amd64.deb ...
Unpacking nodejs (11.15.0-1nodesource1) ...
Setting up libpython2.7-stdlib:amd64 (2.7.12-1ubuntu0~16.04.9) ...
Setting up python2.7 (2.7.12-1ubuntu0~16.04.9) ...
Setting up libpython-stdlib:amd64 (2.7.12-1~16.04) ...
Setting up python (2.7.12-1~16.04) ...
Setting up nodejs (11.15.0-1nodesource1) ...
Removing intermediate container 5ffeda407c70
---> 83e31125b309
Step 5/46 : RUN npm install -g bids-validator
---> Running in 0965fb9f448e
/usr/bin/bids-validator -> /usr/lib/node_modules/bids-validator/bin/bids-validator
+ bids-validator@1.3.8
added 155 packages from 134 contributors in 10.797s
Removing intermediate container 0965fb9f448e
---> b6bfe09ac656
Step 6/46 : RUN apt-get install -y build-essential cmake git graphviz graphviz-dev gsl-bin libcanberra-gtk-module libexpat1-dev libgiftiio-dev libglib2.0-dev libglu1-mesa libglu1-mesa-dev libjpeg-progs libgl1-mesa-dri libglw1-mesa libxml2 libxml2-dev libxext-dev libxft2 libxft-dev libxi-dev libxmu-headers libxmu-dev libxpm-dev libxslt1-dev m4 make mesa-common-dev mesa-utils netpbm pkg-config tcsh unzip vim xvfb xauth zlib1g-dev
---> Running in 1084752102e6
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autotools-dev binutils bzip2 cmake-data cpp cpp-5 cron dbus dpkg-dev
fakeroot fontconfig fontconfig-config fonts-dejavu-core fonts-liberation g++
g++-5 gcc gcc-5 gcc-5-base ghostscript git-man gsfonts hicolor-icon-theme
icu-devtools ifupdown iproute2 isc-dhcp-client isc-dhcp-common less
libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl
libarchive13 libasan2 libasound2 libasound2-data libatk1.0-0 libatk1.0-data
libatm1 libatomic1 libavahi-client3 libavahi-common-data libavahi-common3
libbsd0 libc-dev-bin libc6-dev libcairo2 libcanberra-gtk0 libcanberra0
libcap-ng0 libcc1-0 libcdt5 libcgraph6 libcilkrts5 libcups2 libcupsfilters1
libcupsimage2 libcurl3 libdatrie1 libdbus-1-3 libdns-export162 libdpkg-perl
libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libelf1 liberror-perl libfakeroot
libfile-fcntllock-perl libfontconfig1 libfontconfig1-dev libfontenc1
libfreetype6 libfreetype6-dev libgcc-5-dev libgd3 libgdbm3
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgiftiio0 libgl1-mesa-dev
libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data
libgomp1 libgpm2 libgraphite2-3 libgraphviz-dev libgs9 libgs9-common libgsl2
libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgvc6 libgvc6-plugins-gtk
libgvpr2 libharfbuzz0b libice-dev libice6 libicu-dev libicu55 libijs-0.35
libisc-export160 libisl15 libitm1 libjbig0 libjbig2dec0 libjpeg-turbo8
libjpeg8 libjpeg9 libjsoncpp1 liblcms2-2 libllvm6.0 liblsan0 libltdl-dev
libltdl7 liblzo2-2 libmnl0 libmotif-common libmpc3 libmpfr4 libmpx0
libnetpbm10 libnifti-dev libnifti2 libogg0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4
libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.22
libpixman-1-0 libpng12-0 libpng12-dev libpopt0 libpthread-stubs0-dev
libpython3.5 libquadmath0 libsensors4 libsigsegv2 libsm-dev libsm6
libstdc++-5-dev libstdc++6 libtdb1 libthai-data libthai0 libtiff5 libtool
libtsan0 libtxc-dxtn-s2tc0 libubsan0 libvorbis0a libvorbisfile3 libvpx3
libx11-6 libx11-data libx11-dev libx11-doc libx11-xcb-dev libx11-xcb1
libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0
libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev
libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0
libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0
libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1
libxcb1-dev libxcomposite1 libxcursor1 libxdamage-dev libxdamage1
libxdmcp-dev libxdmcp6 libxdot4 libxext6 libxfixes-dev libxfixes3 libxfont1
libxi6 libxinerama1 libxkbfile1 libxm4 libxmu6 libxmuu1 libxpm4 libxrandr2
libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1
libxt-dev libxt6 libxtables11 libxxf86vm-dev libxxf86vm1 linux-libc-dev
manpages manpages-dev netbase neurodebian-popularity-contest openssh-client
patch perl perl-modules-5.22 poppler-data popularity-contest rename rsync
sgml-base shared-mime-info sound-theme-freedesktop ucf vim-common
vim-runtime x11-common x11-xkb-utils x11proto-core-dev x11proto-damage-dev
x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev
x11proto-kb-dev x11proto-render-dev x11proto-xext-dev
x11proto-xf86vidmode-dev xdg-user-dirs xfonts-base xfonts-encodings
xfonts-utils xkb-data xml-core xorg-sgml-doctools xserver-common xtrans-dev
xz-utils
Suggested packages:
binutils-doc bzip2-doc codeblocks eclipse ninja-build cpp-doc gcc-5-locales
anacron logrotate checksecurity exim4 | postfix | mail-transport-agent
dbus-user-session | dbus-x11 debian-keyring g++-multilib g++-5-multilib
gcc-5-doc libstdc++6-5-dbg gcc-multilib autoconf automake flex bison gdb
gcc-doc gcc-5-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg
libasan2-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg
libmpx0-dbg libquadmath0-dbg ghostscript-x hpijs gettext-base git-daemon-run
| git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-arch
git-cvs git-mediawiki git-svn graphviz-doc ppp rdnssd iproute2-doc
resolvconf avahi-autoipd isc-dhcp-client-ddns apparmor lrzip
libasound2-plugins alsa-utils glibc-doc libcanberra-pulse cups-common
libgd-tools libglib2.0-doc gpm fonts-droid texlive-lang-cjk gsl-ref-psdoc
| gsl-doc-pdf | gsl-doc-info | gsl-ref-html librsvg2-common gvfs libice-doc
icu-doc liblcms2-utils libtool-doc pciutils lm-sensors libsm-doc
libstdc++-5-doc automaken gfortran | fortran95-compiler gcj-jdk libxcb-doc
libxext-doc libxt-doc make-doc man-browser ssh-askpass libpam-ssh keychain
monkeysphere ed diffutils-doc perl-doc libterm-readline-gnu-perl
| libterm-readline-perl-perl poppler-utils fonts-japanese-mincho
| fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic
fonts-arphic-ukai fonts-arphic-uming fonts-nanum openssh-server
sgml-base-doc zip ctags vim-doc vim-scripts vim-gnome-py2 | vim-gtk-py2
| vim-gtk3-py2 | vim-athena-py2 | vim-nox-py2 debhelper
The following NEW packages will be installed:
autotools-dev binutils build-essential bzip2 cmake cmake-data cpp cpp-5 cron
dbus dpkg-dev fakeroot fontconfig fontconfig-config fonts-dejavu-core
fonts-liberation g++ g++-5 gcc gcc-5 ghostscript git git-man graphviz
graphviz-dev gsfonts gsl-bin hicolor-icon-theme icu-devtools ifupdown
iproute2 isc-dhcp-client isc-dhcp-common less libalgorithm-diff-perl
libalgorithm-diff-xs-perl libalgorithm-merge-perl libarchive13 libasan2
libasound2 libasound2-data libatk1.0-0 libatk1.0-data libatm1 libatomic1
libavahi-client3 libavahi-common-data libavahi-common3 libbsd0 libc-dev-bin
libc6-dev libcairo2 libcanberra-gtk-module libcanberra-gtk0 libcanberra0
libcap-ng0 libcc1-0 libcdt5 libcgraph6 libcilkrts5 libcups2 libcupsfilters1
libcupsimage2 libcurl3 libdatrie1 libdbus-1-3 libdns-export162 libdpkg-perl
libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libelf1 liberror-perl libexpat1-dev
libfakeroot libfile-fcntllock-perl libfontconfig1 libfontconfig1-dev
libfontenc1 libfreetype6 libfreetype6-dev libgcc-5-dev libgd3 libgdbm3
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgiftiio-dev libgiftiio0
libgl1-mesa-dev libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0
libglib2.0-bin libglib2.0-data libglib2.0-dev libglu1-mesa libglu1-mesa-dev
libglw1-mesa libgomp1 libgpm2 libgraphite2-3 libgraphviz-dev libgs9
libgs9-common libgsl2 libgtk2.0-0 libgtk2.0-bin libgtk2.0-common libgvc6
libgvc6-plugins-gtk libgvpr2 libharfbuzz0b libice-dev libice6 libicu-dev
libicu55 libijs-0.35 libisc-export160 libisl15 libitm1 libjbig0 libjbig2dec0
libjpeg-progs libjpeg-turbo8 libjpeg8 libjpeg9 libjsoncpp1 liblcms2-2
libllvm6.0 liblsan0 libltdl-dev libltdl7 liblzo2-2 libmnl0 libmotif-common
libmpc3 libmpfr4 libmpx0 libnetpbm10 libnifti-dev libnifti2 libogg0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpathplan4 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libperl5.22 libpixman-1-0 libpng12-0 libpng12-dev libpopt0
libpthread-stubs0-dev libpython3.5 libquadmath0 libsensors4 libsigsegv2
libsm-dev libsm6 libstdc++-5-dev libtdb1 libthai-data libthai0 libtiff5
libtool libtsan0 libtxc-dxtn-s2tc0 libubsan0 libvorbis0a libvorbisfile3
libvpx3 libx11-6 libx11-data libx11-dev libx11-doc libx11-xcb-dev
libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev
libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev
libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0
libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0
libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1
libxcb1-dev libxcomposite1 libxcursor1 libxdamage-dev libxdamage1
libxdmcp-dev libxdmcp6 libxdot4 libxext-dev libxext6 libxfixes-dev
libxfixes3 libxfont1 libxft-dev libxft2 libxi-dev libxi6 libxinerama1
libxkbfile1 libxm4 libxml2 libxml2-dev libxmu-dev libxmu-headers libxmu6
libxmuu1 libxpm-dev libxpm4 libxrandr2 libxrender-dev libxrender1
libxshmfence-dev libxshmfence1 libxslt1-dev libxslt1.1 libxt-dev libxt6
libxtables11 libxxf86vm-dev libxxf86vm1 linux-libc-dev m4 make manpages
manpages-dev mesa-common-dev mesa-utils netbase netpbm
neurodebian-popularity-contest openssh-client patch perl perl-modules-5.22
pkg-config poppler-data popularity-contest rename rsync sgml-base
shared-mime-info sound-theme-freedesktop tcsh ucf unzip vim vim-common
vim-runtime x11-common x11-xkb-utils x11proto-core-dev x11proto-damage-dev
x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev
x11proto-kb-dev x11proto-render-dev x11proto-xext-dev
x11proto-xf86vidmode-dev xauth xdg-user-dirs xfonts-base xfonts-encodings
xfonts-utils xkb-data xml-core xorg-sgml-doctools xserver-common xtrans-dev
xvfb xz-utils zlib1g-dev
The following packages will be upgraded:
gcc-5-base libstdc++6
2 upgraded, 305 newly installed, 0 to remove and 0 not upgraded.
Need to get 154 MB of archives.
After this operation, 748 MB of additional disk space will be used.
Get:1 http://neuro.debian.net/debian xenial/main amd64 neurodebian-popularity-contest all 0.39.0~nd16.04+1 [13.1 kB]
Get:2 http://neuro.debian.net/debian xenial/main amd64 libgiftiio0 amd64 1.0.9-2~nd16.04+1 [45.4 kB]
Get:3 http://neuro.debian.net/debian xenial/main amd64 libgiftiio-dev amd64 1.0.9-2~nd16.04+1 [48.1 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 cron amd64 3.0pl1-128ubuntu2 [68.4 kB]
Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libatm1 amd64 1:2.5.1-1.5 [24.2 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmnl0 amd64 1.0.3-5 [12.0 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpopt0 amd64 1.16-10 [26.0 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgdbm3 amd64 1.8.3-13.1 [16.9 kB]
Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-0 amd64 2.48.2-0ubuntu4.4 [1120 kB]
Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B]
Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB]
Get:12 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB]
Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-data all 2:1.6.3-1ubuntu2.1 [113 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2.1 [570 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 popularity-contest all 1.64ubuntu2 [33.0 kB]
Get:17 http://archive.ubuntu.com/ubuntu xenial/main amd64 sgml-base all 1.26+nmu4ubuntu1 [12.5 kB]
Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cmake-data all 3.5.1-1ubuntu3 [1121 kB]
Get:19 http://archive.ubuntu.com/ubuntu xenial/main amd64 liblzo2-2 amd64 2.08-1.2 [48.7 kB]
Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5-base amd64 5.4.0-6ubuntu1~16.04.12 [17.4 kB]
Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++6 amd64 5.4.0-6ubuntu1~16.04.12 [393 kB]
Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu55 amd64 55.1-7ubuntu0.4 [7646 kB]
Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2 amd64 2.9.3+dfsg1-1ubuntu0.6 [697 kB]
Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive13 amd64 3.1.2-11ubuntu0.16.04.7 [262 kB]
Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcurl3 amd64 7.47.0-1ubuntu2.14 [186 kB]
Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjsoncpp1 amd64 1.7.2-1 [73.0 kB]
Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cmake amd64 3.5.1-1ubuntu3 [2623 kB]
Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB]
Get:29 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB]
Get:30 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB]
Get:31 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB]
Get:32 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.4 [315 kB]
Get:33 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB]
Get:34 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig amd64 2.11.94-0ubuntu1.1 [178 kB]
Get:35 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-common all 2.4.91-2~16.04.1 [4764 B]
Get:36 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm2 amd64 2.4.91-2~16.04.1 [30.8 kB]
Get:37 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglapi-mesa amd64 18.0.5-0ubuntu0~16.04.1 [23.4 kB]
Get:38 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-xcb1 amd64 2:1.6.3-1ubuntu2.1 [9044 B]
Get:39 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-dri2-0 amd64 1.11.1-1ubuntu1 [6882 B]
Get:40 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-dri3-0 amd64 1.11.1-1ubuntu1 [5218 B]
Get:41 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-glx0 amd64 1.11.1-1ubuntu1 [20.9 kB]
Get:42 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-present0 amd64 1.11.1-1ubuntu1 [5218 B]
Get:43 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-sync1 amd64 1.11.1-1ubuntu1 [8324 B]
Get:44 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdamage1 amd64 1:1.1.4-2 [6946 B]
Get:45 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxfixes3 amd64 1:5.0.1-2 [11.1 kB]
Get:46 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxshmfence1 amd64 1.2-1 [5042 B]
Get:47 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxxf86vm1 amd64 1:1.1.4-1 [10.6 kB]
Get:48 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-amdgpu1 amd64 2.4.91-2~16.04.1 [18.9 kB]
Get:49 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpciaccess0 amd64 0.13.4-1 [18.1 kB]
Get:50 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-intel1 amd64 2.4.91-2~16.04.1 [59.9 kB]
Get:51 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-nouveau2 amd64 2.4.91-2~16.04.1 [16.3 kB]
Get:52 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-radeon1 amd64 2.4.91-2~16.04.1 [21.5 kB]
Get:53 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libelf1 amd64 0.165-3ubuntu1.2 [43.5 kB]
Get:54 http://archive.ubuntu.com/ubuntu xenial/main amd64 libbsd0 amd64 0.8.2-1 [41.7 kB]
Get:55 http://archive.ubuntu.com/ubuntu xenial/main amd64 libedit2 amd64 3.1-20150325-1ubuntu2 [76.5 kB]
Get:56 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libllvm6.0 amd64 1:6.0-1ubuntu2~16.04.1 [14.3 MB]
Get:57 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsensors4 amd64 1:3.4.0-2 [28.4 kB]
Get:58 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgl1-mesa-dri amd64 18.0.5-0ubuntu0~16.04.1 [6080 kB]
Get:59 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgl1-mesa-glx amd64 18.0.5-0ubuntu0~16.04.1 [132 kB]
Get:60 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB]
Get:61 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libmotif-common all 2.3.4-10 [11.1 kB]
Get:62 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.3 [111 kB]
Get:63 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B]
Get:64 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB]
Get:65 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB]
Get:66 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB]
Get:67 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB]
Get:68 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB]
Get:69 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB]
Get:70 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libxm4 amd64 2.3.4-10 [997 kB]
Get:71 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libglw1-mesa amd64 8.0.0-1.1 [9930 B]
Get:72 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgpm2 amd64 1.20.4-6.1 [16.5 kB]
Get:73 http://archive.ubuntu.com/ubuntu xenial/main amd64 libogg0 amd64 1.3.2-1 [17.2 kB]
Get:74 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB]
Get:75 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsigsegv2 amd64 2.10-4 [14.1 kB]
Get:76 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcomposite1 amd64 1:0.4.4-1 [7714 B]
Get:77 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxinerama1 amd64 2:1.1.3-1 [7908 B]
Get:78 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl-modules-5.22 all 5.22.1-9ubuntu0.6 [2629 kB]
Get:79 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libperl5.22 amd64 5.22.1-9ubuntu0.6 [3405 kB]
Get:80 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 perl amd64 5.22.1-9ubuntu0.6 [237 kB]
Get:81 http://archive.ubuntu.com/ubuntu xenial/main amd64 poppler-data all 0.4.7-7 [1495 kB]
Get:82 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB]
Get:83 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpfr4 amd64 3.1.4-1 [191 kB]
Get:84 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB]
Get:85 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtxc-dxtn-s2tc0 amd64 0~git20131104-1.1 [51.8 kB]
Get:86 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 bzip2 amd64 1.0.6-8ubuntu0.2 [32.5 kB]
Get:87 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 iproute2 amd64 4.3.0-1ubuntu3.16.04.5 [523 kB]
Get:88 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ifupdown amd64 0.8.10ubuntu1.4 [54.9 kB]
Get:89 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libisc-export160 amd64 1:9.10.3.dfsg.P4-8ubuntu1.15 [153 kB]
Get:90 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdns-export162 amd64 1:9.10.3.dfsg.P4-8ubuntu1.15 [665 kB]
Get:91 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 isc-dhcp-client amd64 4.3.3-5ubuntu12.10 [224 kB]
Get:92 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 isc-dhcp-common amd64 4.3.3-5ubuntu12.10 [105 kB]
Get:93 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 less amd64 481-2.1ubuntu0.2 [110 kB]
Get:94 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxtables11 amd64 1.6.0-2ubuntu3 [27.2 kB]
Get:95 http://archive.ubuntu.com/ubuntu xenial/main amd64 netbase all 5.3 [12.9 kB]
Get:96 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 vim-common amd64 2:7.4.1689-3ubuntu1.3 [103 kB]
Get:97 http://archive.ubuntu.com/ubuntu xenial/main amd64 xkb-data all 2.16-1ubuntu1 [305 kB]
Get:98 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcap-ng0 amd64 0.7.7-1 [10.9 kB]
Get:99 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdbus-1-3 amd64 1.10.6-1ubuntu3.4 [161 kB]
Get:100 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dbus amd64 1.10.6-1ubuntu3.4 [142 kB]
Get:101 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-data all 2.48.2-0ubuntu4.4 [131 kB]
Get:102 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B]
Get:103 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages all 4.04-2 [1087 kB]
Get:104 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openssh-client amd64 1:7.2p2-4ubuntu2.8 [590 kB]
Get:105 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 rsync amd64 3.1.1-3ubuntu1.2 [329 kB]
Get:106 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 shared-mime-info amd64 1.5-2ubuntu0.2 [405 kB]
Get:107 http://archive.ubuntu.com/ubuntu xenial/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB]
Get:108 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xdg-user-dirs amd64 0.15-2ubuntu6.16.04.1 [61.8 kB]
Get:109 http://archive.ubuntu.com/ubuntu xenial/main amd64 xml-core all 0.13+nmu2 [23.3 kB]
Get:110 http://archive.ubuntu.com/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB]
Get:111 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 binutils amd64 2.26.1-1ubuntu1~16.04.8 [2312 kB]
Get:112 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc-dev-bin amd64 2.23-0ubuntu11 [68.5 kB]
Get:113 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 linux-libc-dev amd64 4.4.0-169.198 [839 kB]
Get:114 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libc6-dev amd64 2.23-0ubuntu11 [2086 kB]
Get:115 http://archive.ubuntu.com/ubuntu xenial/main amd64 libisl15 amd64 0.16.1-1 [524 kB]
Get:116 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 cpp-5 amd64 5.4.0-6ubuntu1~16.04.12 [7783 kB]
Get:117 http://archive.ubuntu.com/ubuntu xenial/main amd64 cpp amd64 4:5.3.1-1ubuntu1 [27.7 kB]
Get:118 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcc1-0 amd64 5.4.0-6ubuntu1~16.04.12 [38.8 kB]
Get:119 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgomp1 amd64 5.4.0-6ubuntu1~16.04.12 [55.2 kB]
Get:120 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libitm1 amd64 5.4.0-6ubuntu1~16.04.12 [27.4 kB]
Get:121 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libatomic1 amd64 5.4.0-6ubuntu1~16.04.12 [8892 B]
Get:122 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasan2 amd64 5.4.0-6ubuntu1~16.04.12 [265 kB]
Get:123 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblsan0 amd64 5.4.0-6ubuntu1~16.04.12 [105 kB]
Get:124 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtsan0 amd64 5.4.0-6ubuntu1~16.04.12 [244 kB]
Get:125 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libubsan0 amd64 5.4.0-6ubuntu1~16.04.12 [95.3 kB]
Get:126 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcilkrts5 amd64 5.4.0-6ubuntu1~16.04.12 [40.0 kB]
Get:127 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libmpx0 amd64 5.4.0-6ubuntu1~16.04.12 [9762 B]
Get:128 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libquadmath0 amd64 5.4.0-6ubuntu1~16.04.12 [131 kB]
Get:129 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgcc-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [2239 kB]
Get:130 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gcc-5 amd64 5.4.0-6ubuntu1~16.04.12 [8612 kB]
Get:131 http://archive.ubuntu.com/ubuntu xenial/main amd64 gcc amd64 4:5.3.1-1ubuntu1 [5244 B]
Get:132 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libstdc++-5-dev amd64 5.4.0-6ubuntu1~16.04.12 [1428 kB]
Get:133 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 g++-5 amd64 5.4.0-6ubuntu1~16.04.12 [8430 kB]
Get:134 http://archive.ubuntu.com/ubuntu xenial/main amd64 g++ amd64 4:5.3.1-1ubuntu1 [1504 B]
Get:135 http://archive.ubuntu.com/ubuntu xenial/main amd64 make amd64 4.1-6 [151 kB]
Get:136 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdpkg-perl all 1.18.4ubuntu1.6 [195 kB]
Get:137 http://archive.ubuntu.com/ubuntu xenial/main amd64 xz-utils amd64 5.1.1alpha+20120614-2ubuntu2 [78.8 kB]
Get:138 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 patch amd64 2.7.5-1ubuntu0.16.04.2 [90.8 kB]
Get:139 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dpkg-dev all 1.18.4ubuntu1.6 [584 kB]
Get:140 http://archive.ubuntu.com/ubuntu xenial/main amd64 build-essential amd64 12.1ubuntu2 [4758 B]
Get:141 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfakeroot amd64 1.20.2-1ubuntu1 [25.5 kB]
Get:142 http://archive.ubuntu.com/ubuntu xenial/main amd64 fakeroot amd64 1.20.2-1ubuntu1 [61.8 kB]
Get:143 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-liberation all 1.07.4-1 [829 kB]
Get:144 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libavahi-common-data amd64 0.6.32~rc+dfsg-1ubuntu2.3 [21.5 kB]
Get:145 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libavahi-common3 amd64 0.6.32~rc+dfsg-1ubuntu2.3 [21.7 kB]
Get:146 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libavahi-client3 amd64 0.6.32~rc+dfsg-1ubuntu2.3 [25.3 kB]
Get:147 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcups2 amd64 2.1.3-4ubuntu0.10 [197 kB]
Get:148 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5 amd64 4.0.6-1ubuntu0.7 [149 kB]
Get:149 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcupsfilters1 amd64 1.8.3-2ubuntu3.5 [80.5 kB]
Get:150 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcupsimage2 amd64 2.1.3-4ubuntu0.10 [16.1 kB]
Get:151 http://archive.ubuntu.com/ubuntu xenial/main amd64 libijs-0.35 amd64 0.35-12 [15.5 kB]
Get:152 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjbig2dec0 amd64 0.12+20150918-1ubuntu0.1 [55.3 kB]
Get:153 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblcms2-2 amd64 2.6-3ubuntu2.1 [136 kB]
Get:154 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB]
Get:155 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgs9-common all 9.26~dfsg+0-0ubuntu0.16.04.12 [5095 kB]
Get:156 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgs9 amd64 9.26~dfsg+0-0ubuntu0.16.04.12 [2274 kB]
Get:157 http://archive.ubuntu.com/ubuntu xenial/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 [3374 kB]
Get:158 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ghostscript amd64 9.26~dfsg+0-0ubuntu0.16.04.12 [47.1 kB]
Get:159 http://archive.ubuntu.com/ubuntu xenial/main amd64 liberror-perl all 0.17-1.2 [19.6 kB]
Get:160 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 git-man all 1:2.7.4-0ubuntu1.6 [736 kB]
Get:161 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 git amd64 1:2.7.4-0ubuntu1.6 [3176 kB]
Get:162 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcdt5 amd64 2.38.0-12ubuntu2.1 [23.4 kB]
Get:163 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcgraph6 amd64 2.38.0-12ubuntu2.1 [43.6 kB]
Get:164 http://archive.ubuntu.com/ubuntu xenial/main amd64 libvpx3 amd64 1.5.0-2ubuntu1 [732 kB]
Get:165 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxpm4 amd64 1:3.5.11-1ubuntu0.16.04.1 [33.8 kB]
Get:166 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgd3 amd64 2.1.1-4ubuntu0.16.04.11 [126 kB]
Get:167 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB]
Get:168 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB]
Get:169 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B]
Get:170 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcairo2 amd64 1.14.6-1 [555 kB]
Get:171 http://archive.ubuntu.com/ubuntu xenial/main amd64 libltdl7 amd64 2.4.6-0.1 [38.3 kB]
Get:172 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai-data all 0.1.24-2 [131 kB]
Get:173 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB]
Get:174 http://archive.ubuntu.com/ubuntu xenial/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB]
Get:175 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpango-1.0-0 amd64 1.38.1-1 [148 kB]
Get:176 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphite2-3 amd64 1.3.10-0ubuntu0.16.04.1 [71.7 kB]
Get:177 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libharfbuzz0b amd64 1.0.1-1ubuntu0.1 [140 kB]
Get:178 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangoft2-1.0-0 amd64 1.38.1-1 [33.3 kB]
Get:179 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpangocairo-1.0-0 amd64 1.38.1-1 [20.5 kB]
Get:180 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpathplan4 amd64 2.38.0-12ubuntu2.1 [26.6 kB]
Get:181 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgvc6 amd64 2.38.0-12ubuntu2.1 [591 kB]
Get:182 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgvpr2 amd64 2.38.0-12ubuntu2.1 [170 kB]
Get:183 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB]
Get:184 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 graphviz amd64 2.38.0-12ubuntu2.1 [680 kB]
Get:185 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxdot4 amd64 2.38.0-12ubuntu2.1 [19.4 kB]
Get:186 http://archive.ubuntu.com/ubuntu xenial/main amd64 libatk1.0-data all 2.18.0-1 [17.1 kB]
Get:187 http://archive.ubuntu.com/ubuntu xenial/main amd64 libatk1.0-0 amd64 2.18.0-1 [56.9 kB]
Get:188 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgdk-pixbuf2.0-common all 2.32.2-1ubuntu1.6 [10.3 kB]
Get:189 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgdk-pixbuf2.0-0 amd64 2.32.2-1ubuntu1.6 [159 kB]
Get:190 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgtk2.0-common all 2.24.30-1ubuntu1.16.04.2 [123 kB]
Get:191 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxcursor1 amd64 1:1.1.14-1ubuntu0.16.04.2 [19.9 kB]
Get:192 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxi6 amd64 2:1.7.6-1 [28.6 kB]
Get:193 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrandr2 amd64 2:1.5.0-1 [17.6 kB]
Get:194 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgtk2.0-0 amd64 2.24.30-1ubuntu1.16.04.2 [1775 kB]
Get:195 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 libgvc6-plugins-gtk amd64 2.38.0-12ubuntu2.1 [21.7 kB]
Get:196 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexpat1-dev amd64 2.1.0-7ubuntu0.16.04.5 [115 kB]
Get:197 http://archive.ubuntu.com/ubuntu xenial/main amd64 libltdl-dev amd64 2.4.6-0.1 [162 kB]
Get:198 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4.1 [168 kB]
Get:199 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgraphviz-dev amd64 2.38.0-12ubuntu2.1 [61.3 kB]
Get:200 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 graphviz-dev all 2.38.0-12ubuntu2.1 [12.0 kB]
Get:201 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgsl2 amd64 2.1+dfsg-2 [840 kB]
Get:202 http://archive.ubuntu.com/ubuntu xenial/universe amd64 gsl-bin amd64 2.1+dfsg-2 [11.2 kB]
Get:203 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 hicolor-icon-theme all 0.15-0ubuntu1.1 [7698 B]
Get:204 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 icu-devtools amd64 55.1-7ubuntu0.4 [166 kB]
Get:205 http://archive.ubuntu.com/ubuntu xenial/main amd64 libalgorithm-diff-perl all 1.19.03-1 [47.6 kB]
Get:206 http://archive.ubuntu.com/ubuntu xenial/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4build1 [11.0 kB]
Get:207 http://archive.ubuntu.com/ubuntu xenial/main amd64 libalgorithm-merge-perl all 0.08-3 [12.0 kB]
Get:208 http://archive.ubuntu.com/ubuntu xenial/main amd64 libasound2-data all 1.1.0-0ubuntu1 [29.4 kB]
Get:209 http://archive.ubuntu.com/ubuntu xenial/main amd64 libasound2 amd64 1.1.0-0ubuntu1 [350 kB]
Get:210 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtdb1 amd64 1.3.8-2 [38.2 kB]
Get:211 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libvorbis0a amd64 1.3.5-3ubuntu0.2 [86.0 kB]
Get:212 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libvorbisfile3 amd64 1.3.5-3ubuntu0.2 [15.9 kB]
Get:213 http://archive.ubuntu.com/ubuntu xenial/main amd64 sound-theme-freedesktop all 0.8-1 [385 kB]
Get:214 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcanberra0 amd64 0.30-2.1ubuntu1 [37.4 kB]
Get:215 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcanberra-gtk0 amd64 0.30-2.1ubuntu1 [7778 B]
Get:216 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcanberra-gtk-module amd64 0.30-2.1ubuntu1 [9676 B]
Get:217 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdrm-dev amd64 2.4.91-2~16.04.1 [232 kB]
Get:218 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-fcntllock-perl amd64 0.22-3 [32.0 kB]
Get:219 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-dev amd64 1.2.54-1ubuntu1.1 [183 kB]
Get:220 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6-dev amd64 2.6.1-0.1ubuntu2.4 [956 kB]
Get:221 http://archive.ubuntu.com/ubuntu xenial/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB]
Get:222 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1-dev amd64 2.11.94-0ubuntu1.1 [658 kB]
Get:223 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfontenc1 amd64 1:1.1.3-1 [13.9 kB]
Get:224 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libnifti2 amd64 2.0.0-2 [104 kB]
Get:225 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libnifti-dev amd64 2.0.0-2 [132 kB]
Get:226 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-bin amd64 2.48.2-0ubuntu4.4 [39.5 kB]
Get:227 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre16-3 amd64 2:8.38-3.1 [144 kB]
Get:228 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre32-3 amd64 2:8.38-3.1 [136 kB]
Get:229 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpcre3-dev amd64 2:8.38-3.1 [525 kB]
Get:230 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libglib2.0-dev amd64 2.48.2-0ubuntu4.4 [1379 kB]
Get:231 http://archive.ubuntu.com/ubuntu xenial/main amd64 libglu1-mesa amd64 9.0.0-2.1 [168 kB]
Get:232 http://archive.ubuntu.com/ubuntu xenial/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB]
Get:233 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11proto-core-dev all 7.0.31-1~ubuntu16.04.2 [254 kB]
Get:234 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxau-dev amd64 1:1.0.8-1 [11.1 kB]
Get:235 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdmcp-dev amd64 1:1.1.2-1.1 [25.1 kB]
Get:236 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-input-dev all 2.3.1-1 [118 kB]
Get:237 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-kb-dev all 1.0.7-0ubuntu1 [224 kB]
Get:238 http://archive.ubuntu.com/ubuntu xenial/main amd64 xtrans-dev all 1.3.5-1 [70.5 kB]
Get:239 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpthread-stubs0-dev amd64 0.3-4 [4068 B]
Get:240 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb1-dev amd64 1.11.1-1ubuntu1 [74.2 kB]
Get:241 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-dev amd64 2:1.6.3-1ubuntu2.1 [640 kB]
Get:242 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 mesa-common-dev amd64 18.0.5-0ubuntu0~16.04.1 [543 kB]
Get:243 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-xcb-dev amd64 2:1.6.3-1ubuntu2.1 [9718 B]
Get:244 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-dri3-dev amd64 1.11.1-1ubuntu1 [5752 B]
Get:245 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-randr0 amd64 1.11.1-1ubuntu1 [14.4 kB]
Get:246 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-render0-dev amd64 1.11.1-1ubuntu1 [15.3 kB]
Get:247 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-randr0-dev amd64 1.11.1-1ubuntu1 [18.2 kB]
Get:248 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-xfixes0 amd64 1.11.1-1ubuntu1 [8840 B]
Get:249 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shape0 amd64 1.11.1-1ubuntu1 [5756 B]
Get:250 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-shape0-dev amd64 1.11.1-1ubuntu1 [6900 B]
Get:251 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-xfixes0-dev amd64 1.11.1-1ubuntu1 [11.2 kB]
Get:252 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-sync-dev amd64 1.11.1-1ubuntu1 [10.1 kB]
Get:253 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-present-dev amd64 1.11.1-1ubuntu1 [6618 B]
Get:254 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxshmfence-dev amd64 1.2-1 [3676 B]
Get:255 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-dri2-0-dev amd64 1.11.1-1ubuntu1 [8384 B]
Get:256 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxcb-glx0-dev amd64 1.11.1-1ubuntu1 [26.9 kB]
Get:257 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-xext-dev all 7.3.0-1 [212 kB]
Get:258 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-fixes-dev all 1:5.0-2ubuntu2 [14.2 kB]
Get:259 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxfixes-dev amd64 1:5.0.1-2 [10.9 kB]
Get:260 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-damage-dev all 1:1.2.1-2 [8286 B]
Get:261 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxdamage-dev amd64 1:1.1.4-2 [5028 B]
Get:262 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxext-dev amd64 2:1.3.3-1 [82.1 kB]
Get:263 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-xf86vidmode-dev all 2.3.1-2 [6116 B]
Get:264 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxxf86vm-dev amd64 1:1.1.4-1 [13.3 kB]
Get:265 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-dri2-dev all 2.8-2 [12.6 kB]
Get:266 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-gl-dev all 1.4.17-1 [17.9 kB]
Get:267 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgl1-mesa-dev amd64 18.0.5-0ubuntu0~16.04.1 [4456 B]
Get:268 http://archive.ubuntu.com/ubuntu xenial/main amd64 libglu1-mesa-dev amd64 9.0.0-2.1 [202 kB]
Get:269 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgtk2.0-bin amd64 2.24.30-1ubuntu1.16.04.2 [9834 B]
Get:270 http://archive.ubuntu.com/ubuntu xenial/main amd64 libice-dev amd64 2:1.0.9-1 [44.9 kB]
Get:271 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libicu-dev amd64 55.1-7ubuntu0.4 [8566 kB]
Get:272 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 libjpeg9 amd64 1:9b-1ubuntu1 [113 kB]
Get:273 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 libjpeg-progs amd64 1:9b-1ubuntu1 [70.9 kB]
Get:274 http://archive.ubuntu.com/ubuntu xenial/main amd64 libnetpbm10 amd64 2:10.0-15.3 [58.1 kB]
Get:275 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B]
Get:276 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpython3.5 amd64 3.5.2-2ubuntu0~16.04.9 [1360 kB]
Get:277 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsm-dev amd64 2:1.2.2-1 [16.2 kB]
Get:278 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtool all 2.4.6-0.1 [193 kB]
Get:279 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libx11-doc all 2:1.6.3-1ubuntu2.1 [1470 kB]
Get:280 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxfont1 amd64 1:1.5.1-1ubuntu0.16.04.4 [95.0 kB]
Get:281 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11proto-render-dev all 2:0.11.1-2 [20.1 kB]
Get:282 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender-dev amd64 1:0.9.9-0ubuntu1 [24.5 kB]
Get:283 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxft-dev amd64 2.3.2-1 [45.7 kB]
Get:284 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxi-dev amd64 2:1.7.6-1 [184 kB]
Get:285 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxkbfile1 amd64 1:1.0.9-0ubuntu1 [65.1 kB]
Get:286 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxml2-dev amd64 2.9.3+dfsg1-1ubuntu0.6 [743 kB]
Get:287 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxt-dev amd64 1:1.1.5-0ubuntu1 [394 kB]
Get:288 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu-headers all 2:1.1.2-2 [54.3 kB]
Get:289 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxmu-dev amd64 2:1.1.2-2 [49.0 kB]
Get:290 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxpm-dev amd64 1:3.5.11-1ubuntu0.16.04.1 [86.7 kB]
Get:291 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxslt1.1 amd64 1.1.28-2.1ubuntu0.3 [146 kB]
Get:292 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libxslt1-dev amd64 1.1.28-2.1ubuntu0.3 [406 kB]
Get:293 http://archive.ubuntu.com/ubuntu xenial/main amd64 m4 amd64 1.4.17-5 [195 kB]
Get:294 http://archive.ubuntu.com/ubuntu xenial/main amd64 manpages-dev all 4.04-2 [2048 kB]
Get:295 http://archive.ubuntu.com/ubuntu xenial/main amd64 netpbm amd64 2:10.0-15.3 [997 kB]
Get:296 http://archive.ubuntu.com/ubuntu xenial/main amd64 rename all 0.20-4 [12.0 kB]
Get:297 http://archive.ubuntu.com/ubuntu xenial/universe amd64 tcsh amd64 6.18.01-5 [410 kB]
Get:298 http://archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB]
Get:299 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 vim-runtime all 2:7.4.1689-3ubuntu1.3 [5179 kB]
Get:300 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 vim amd64 2:7.4.1689-3ubuntu1.3 [1036 kB]
Get:301 http://archive.ubuntu.com/ubuntu xenial/main amd64 x11-xkb-utils amd64 7.7+2 [153 kB]
Get:302 http://archive.ubuntu.com/ubuntu xenial/main amd64 xfonts-encodings all 1:1.0.4-2 [573 kB]
Get:303 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xfonts-utils amd64 1:7.7+3ubuntu0.16.04.2 [74.6 kB]
Get:304 http://archive.ubuntu.com/ubuntu xenial/main amd64 xfonts-base all 1:1.0.4+nmu1 [5914 kB]
Get:305 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 xserver-common all 2:1.18.4-0ubuntu0.8 [27.7 kB]
Get:306 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 xvfb amd64 2:1.18.4-0ubuntu0.8 [777 kB]
Get:307 http://archive.ubuntu.com/ubuntu xenial/universe amd64 mesa-utils amd64 8.3.0-1 [31.0 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 154 MB in 8min 9s (315 kB/s)
Selecting previously unselected package cron.
(Reading database ... 11623 files and directories currently installed.)
Preparing to unpack .../cron_3.0pl1-128ubuntu2_amd64.deb ...
Unpacking cron (3.0pl1-128ubuntu2) ...
Selecting previously unselected package libatm1:amd64.
Preparing to unpack .../libatm1_1%3a2.5.1-1.5_amd64.deb ...
Unpacking libatm1:amd64 (1:2.5.1-1.5) ...
Selecting previously unselected package libmnl0:amd64.
Preparing to unpack .../libmnl0_1.0.3-5_amd64.deb ...
Unpacking libmnl0:amd64 (1.0.3-5) ...
Selecting previously unselected package libpopt0:amd64.
Preparing to unpack .../libpopt0_1.16-10_amd64.deb ...
Unpacking libpopt0:amd64 (1.16-10) ...
Selecting previously unselected package libgdbm3:amd64.
Preparing to unpack .../libgdbm3_1.8.3-13.1_amd64.deb ...
Unpacking libgdbm3:amd64 (1.8.3-13.1) ...
Selecting previously unselected package libglib2.0-0:amd64.
Preparing to unpack .../libglib2.0-0_2.48.2-0ubuntu4.4_amd64.deb ...
Unpacking libglib2.0-0:amd64 (2.48.2-0ubuntu4.4) ...
Selecting previously unselected package libxau6:amd64.
Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ...
Unpacking libxau6:amd64 (1:1.0.8-1) ...
Selecting previously unselected package libxdmcp6:amd64.
Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ...
Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ...
Selecting previously unselected package libxcb1:amd64.
Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ...
Unpacking libxcb1:amd64 (1.11.1-1ubuntu1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2.1_all.deb ...
Unpacking libx11-data (2:1.6.3-1ubuntu2.1) ...
Selecting previously unselected package libx11-6:amd64.
Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2.1_amd64.deb ...
Unpacking libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ...
Selecting previously unselected package libxext6:amd64.
Preparing to unpack .../libxext6_2%3a1.3.3-1_amd64.deb ...
Unpacking libxext6:amd64 (2:1.3.3-1) ...
Selecting previously unselected package popularity-contest.
Preparing to unpack .../popularity-contest_1.64ubuntu2_all.deb ...
Unpacking popularity-contest (1.64ubuntu2) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../sgml-base_1.26+nmu4ubuntu1_all.deb ...
Unpacking sgml-base (1.26+nmu4ubuntu1) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../cmake-data_3.5.1-1ubuntu3_all.deb ...
Unpacking cmake-data (3.5.1-1ubuntu3) ...
Selecting previously unselected package liblzo2-2:amd64.
Preparing to unpack .../liblzo2-2_2.08-1.2_amd64.deb ...
Unpacking liblzo2-2:amd64 (2.08-1.2) ...
Preparing to unpack .../gcc-5-base_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
Unpacking gcc-5-base:amd64 (5.4.0-6ubuntu1~16.04.12) over (5.4.0-6ubuntu1~16.04.11) ...
Processing triggers for systemd (229-4ubuntu21.22) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Setting up gcc-5-base:amd64 (5.4.0-6ubuntu1~16.04.12) ...
(Reading database ... 14102 files and directories currently installed.)
Preparing to unpack .../libstdc++6_5.4.0-6ubuntu1~16.04.12_amd64.deb ...
Unpacking libstdc++6:amd64 (5.4.0-6ubuntu1~16.04.12) over (5.4.0-6ubuntu1~16.04.11) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Setting up libstdc++6:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Selecting previously unselected package libicu55:amd64.
(Reading database ... 14102 files and directories currently installed.)
Preparing to unpack .../libicu55_55.1-7ubuntu0.4_amd64.deb ...
Unpacking libicu55:amd64 (55.1-7ubuntu0.4) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../libxml2_2.9.3+dfsg1-1ubuntu0.6_amd64.deb ...
Unpacking libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ...
Selecting previously unselected package libarchive13:amd64.
Preparing to unpack .../libarchive13_3.1.2-11ubuntu0.16.04.7_amd64.deb ...
Unpacking libarchive13:amd64 (3.1.2-11ubuntu0.16.04.7) ...
Selecting previously unselected package libcurl3:amd64.
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Unpacking libcurl3:amd64 (7.47.0-1ubuntu2.14) ...
Selecting previously unselected package libjsoncpp1:amd64.
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Unpacking libjsoncpp1:amd64 (1.7.2-1) ...
Selecting previously unselected package cmake.
Preparing to unpack .../cmake_3.5.1-1ubuntu3_amd64.deb ...
Unpacking cmake (3.5.1-1ubuntu3) ...
Selecting previously unselected package fonts-dejavu-core.
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Unpacking fonts-dejavu-core (2.35-1) ...
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Moving old data out of the way
Unpacking ucf (3.0036) ...
Selecting previously unselected package fontconfig-config.
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Unpacking fontconfig-config (2.11.94-0ubuntu1.1) ...
Selecting previously unselected package libpng12-0:amd64.
Preparing to unpack .../libpng12-0_1.2.54-1ubuntu1.1_amd64.deb ...
Unpacking libpng12-0:amd64 (1.2.54-1ubuntu1.1) ...
Selecting previously unselected package libfreetype6:amd64.
Preparing to unpack .../libfreetype6_2.6.1-0.1ubuntu2.4_amd64.deb ...
Unpacking libfreetype6:amd64 (2.6.1-0.1ubuntu2.4) ...
Selecting previously unselected package libfontconfig1:amd64.
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Unpacking libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../fontconfig_2.11.94-0ubuntu1.1_amd64.deb ...
Unpacking fontconfig (2.11.94-0ubuntu1.1) ...
Selecting previously unselected package libdrm-common.
Preparing to unpack .../libdrm-common_2.4.91-2~16.04.1_all.deb ...
Unpacking libdrm-common (2.4.91-2~16.04.1) ...
Selecting previously unselected package libdrm2:amd64.
Preparing to unpack .../libdrm2_2.4.91-2~16.04.1_amd64.deb ...
Unpacking libdrm2:amd64 (2.4.91-2~16.04.1) ...
Selecting previously unselected package libglapi-mesa:amd64.
Preparing to unpack .../libglapi-mesa_18.0.5-0ubuntu0~16.04.1_amd64.deb ...
Unpacking libglapi-mesa:amd64 (18.0.5-0ubuntu0~16.04.1) ...
Selecting previously unselected package libx11-xcb1:amd64.
Preparing to unpack .../libx11-xcb1_2%3a1.6.3-1ubuntu2.1_amd64.deb ...
Unpacking libx11-xcb1:amd64 (2:1.6.3-1ubuntu2.1) ...
Selecting previously unselected package libxcb-dri2-0:amd64.
Preparing to unpack .../libxcb-dri2-0_1.11.1-1ubuntu1_amd64.deb ...
Unpacking libxcb-dri2-0:amd64 (1.11.1-1ubuntu1) ...
Selecting previously unselected package libxcb-dri3-0:amd64.
Preparing to unpack .../libxcb-dri3-0_1.11.1-1ubuntu1_amd64.deb ...
Unpacking libxcb-dri3-0:amd64 (1.11.1-1ubuntu1) ...
Selecting previously unselected package libxcb-glx0:amd64.
Preparing to unpack .../libxcb-glx0_1.11.1-1ubuntu1_amd64.deb ...
Unpacking libxcb-glx0:amd64 (1.11.1-1ubuntu1) ...
Selecting previously unselected package libxcb-present0:amd64.
Preparing to unpack .../libxcb-present0_1.11.1-1ubuntu1_amd64.deb ...
Unpacking libxcb-present0:amd64 (1.11.1-1ubuntu1) ...
Selecting previously unselected package libxcb-sync1:amd64.
Preparing to unpack .../libxcb-sync1_1.11.1-1ubuntu1_amd64.deb ...
Unpacking libxcb-sync1:amd64 (1.11.1-1ubuntu1) ...
Selecting previously unselected package libxdamage1:amd64.
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Unpacking libxext-dev:amd64 (2:1.3.3-1) ...
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Unpacking x11proto-xf86vidmode-dev (2.3.1-2) ...
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Selecting previously unselected package x11proto-gl-dev.
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Selecting previously unselected package libgl1-mesa-dev:amd64.
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Unpacking netpbm (2:10.0-15.3) ...
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Adding 'diversion of /usr/share/vim/vim74/doc/help.txt to /usr/share/vim/vim74/doc/help.txt.vim-tiny by vim-runtime'
Adding 'diversion of /usr/share/vim/vim74/doc/tags to /usr/share/vim/vim74/doc/tags.vim-tiny by vim-runtime'
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Unpacking mesa-utils (8.3.0-1) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Processing triggers for systemd (229-4ubuntu21.22) ...
Processing triggers for mime-support (3.59ubuntu1) ...
Setting up cron (3.0pl1-128ubuntu2) ...
Adding group `crontab' (GID 106) ...
Done.
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
update-rc.d: warning: stop runlevel arguments (1) do not match cron Default-Stop values (none)
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libatm1:amd64 (1:2.5.1-1.5) ...
Setting up libmnl0:amd64 (1.0.3-5) ...
Setting up libpopt0:amd64 (1.16-10) ...
Setting up libgdbm3:amd64 (1.8.3-13.1) ...
Setting up libglib2.0-0:amd64 (2.48.2-0ubuntu4.4) ...
No schema files found: doing nothing.
Setting up libxau6:amd64 (1:1.0.8-1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ...
Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ...
Setting up libx11-data (2:1.6.3-1ubuntu2.1) ...
Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2.1) ...
Setting up libxext6:amd64 (2:1.3.3-1) ...
Setting up popularity-contest (1.64ubuntu2) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
Setting up sgml-base (1.26+nmu4ubuntu1) ...
Setting up cmake-data (3.5.1-1ubuntu3) ...
Setting up liblzo2-2:amd64 (2.08-1.2) ...
Setting up libicu55:amd64 (55.1-7ubuntu0.4) ...
Setting up libxml2:amd64 (2.9.3+dfsg1-1ubuntu0.6) ...
Setting up libarchive13:amd64 (3.1.2-11ubuntu0.16.04.7) ...
Setting up libcurl3:amd64 (7.47.0-1ubuntu2.14) ...
Setting up libjsoncpp1:amd64 (1.7.2-1) ...
Setting up cmake (3.5.1-1ubuntu3) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up ucf (3.0036) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
Setting up fontconfig-config (2.11.94-0ubuntu1.1) ...
Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ...
Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.4) ...
Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ...
Setting up fontconfig (2.11.94-0ubuntu1.1) ...
Regenerating fonts cache... done.
Setting up libdrm-common (2.4.91-2~16.04.1) ...
Setting up libdrm2:amd64 (2.4.91-2~16.04.1) ...
Setting up libglapi-mesa:amd64 (18.0.5-0ubuntu0~16.04.1) ...
Setting up libx11-xcb1:amd64 (2:1.6.3-1ubuntu2.1) ...
Setting up libxcb-dri2-0:amd64 (1.11.1-1ubuntu1) ...
Setting up libxcb-dri3-0:amd64 (1.11.1-1ubuntu1) ...
Setting up libxcb-glx0:amd64 (1.11.1-1ubuntu1) ...
Setting up libxcb-present0:amd64 (1.11.1-1ubuntu1) ...
Setting up libxcb-sync1:amd64 (1.11.1-1ubuntu1) ...
Setting up libxdamage1:amd64 (1:1.1.4-2) ...
Setting up libxfixes3:amd64 (1:5.0.1-2) ...
Setting up libxshmfence1:amd64 (1.2-1) ...
Setting up libxxf86vm1:amd64 (1:1.1.4-1) ...
Setting up libdrm-amdgpu1:amd64 (2.4.91-2~16.04.1) ...
Setting up libpciaccess0:amd64 (0.13.4-1) ...
Setting up libdrm-intel1:amd64 (2.4.91-2~16.04.1) ...
Setting up libdrm-nouveau2:amd64 (2.4.91-2~16.04.1) ...
Setting up libdrm-radeon1:amd64 (2.4.91-2~16.04.1) ...
Setting up libelf1:amd64 (0.165-3ubuntu1.2) ...
Setting up libbsd0:amd64 (0.8.2-1) ...
Setting up libedit2:amd64 (3.1-20150325-1ubuntu2) ...
Setting up libllvm6.0:amd64 (1:6.0-1ubuntu2~16.04.1) ...
Setting up libsensors4:amd64 (1:3.4.0-2) ...
Setting up libgl1-mesa-dri:amd64 (18.0.5-0ubuntu0~16.04.1) ...
Setting up libgl1-mesa-glx:amd64 (18.0.5-0ubuntu0~16.04.1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/x86_64-linux-gnu_GL.conf (x86_64-linux-gnu_gl_conf) in auto mode
Setting up libmotif-common (2.3.4-10) ...
Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.3) ...
Setting up libjpeg8:amd64 (8c-2ubuntu8) ...
Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ...
Setting up libxft2:amd64 (2.3.2-1) ...
Setting up libice6:amd64 (2:1.0.9-1) ...
Setting up libsm6:amd64 (2:1.2.2-1) ...
Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ...
Setting up libxmu6:amd64 (2:1.1.2-2) ...
Setting up libxm4:amd64 (2.3.4-10) ...
Setting up libglw1-mesa:amd64 (8.0.0-1.1) ...
Setting up libgpm2:amd64 (1.20.4-6.1) ...
Setting up libogg0:amd64 (1.3.2-1) ...
Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ...
Setting up libsigsegv2:amd64 (2.10-4) ...
Setting up libxcomposite1:amd64 (1:0.4.4-1) ...
Setting up libxinerama1:amd64 (2:1.1.3-1) ...
Setting up perl-modules-5.22 (5.22.1-9ubuntu0.6) ...
Setting up libperl5.22:amd64 (5.22.1-9ubuntu0.6) ...
Setting up perl (5.22.1-9ubuntu0.6) ...
update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode
Setting up poppler-data (0.4.7-7) ...
Setting up libjbig0:amd64 (2.1-3.1) ...
Setting up libmpfr4:amd64 (3.1.4-1) ...
Setting up libmpc3:amd64 (1.0.3-1) ...
Setting up libtxc-dxtn-s2tc0:amd64 (0~git20131104-1.1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/libtxc_dxtn_s2tc.so.0 to provide /usr/lib/x86_64-linux-gnu/libtxc_dxtn.so (libtxc-dxtn-x86_64-linux-gnu) in auto mode
Setting up bzip2 (1.0.6-8ubuntu0.2) ...
Setting up iproute2 (4.3.0-1ubuntu3.16.04.5) ...
Setting up ifupdown (0.8.10ubuntu1.4) ...
Creating /etc/network/interfaces.
Setting up libisc-export160 (1:9.10.3.dfsg.P4-8ubuntu1.15) ...
Setting up libdns-export162 (1:9.10.3.dfsg.P4-8ubuntu1.15) ...
Setting up isc-dhcp-client (4.3.3-5ubuntu12.10) ...
Setting up isc-dhcp-common (4.3.3-5ubuntu12.10) ...
Setting up less (481-2.1ubuntu0.2) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
Setting up libxtables11:amd64 (1.6.0-2ubuntu3) ...
Setting up netbase (5.3) ...
Setting up vim-common (2:7.4.1689-3ubuntu1.3) ...
Setting up xkb-data (2.16-1ubuntu1) ...
Setting up libcap-ng0:amd64 (0.7.7-1) ...
Setting up libdbus-1-3:amd64 (1.10.6-1ubuntu3.4) ...
Setting up dbus (1.10.6-1ubuntu3.4) ...
ERROR: ld.so: object 'libeatmydata.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
Setting up libglib2.0-data (2.48.2-0ubuntu4.4) ...
Setting up libxmuu1:amd64 (2:1.1.2-2) ...
Setting up manpages (4.04-2) ...
Setting up openssh-client (1:7.2p2-4ubuntu2.8) ...
Setting up rsync (3.1.1-3ubuntu1.2) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up shared-mime-info (1.5-2ubuntu0.2) ...
Setting up xauth (1:1.0.9-1ubuntu2) ...
Setting up xdg-user-dirs (0.15-2ubuntu6.16.04.1) ...
Setting up xml-core (0.13+nmu2) ...
Setting up autotools-dev (20150820.1) ...
Setting up binutils (2.26.1-1ubuntu1~16.04.8) ...
Setting up libc-dev-bin (2.23-0ubuntu11) ...
Setting up linux-libc-dev:amd64 (4.4.0-169.198) ...
Setting up libc6-dev:amd64 (2.23-0ubuntu11) ...
Setting up libisl15:amd64 (0.16.1-1) ...
Setting up cpp-5 (5.4.0-6ubuntu1~16.04.12) ...
Setting up cpp (4:5.3.1-1ubuntu1) ...
Setting up libcc1-0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libgomp1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libitm1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libatomic1:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libasan2:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up liblsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libtsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libubsan0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libcilkrts5:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libmpx0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libquadmath0:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libgcc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up gcc-5 (5.4.0-6ubuntu1~16.04.12) ...
Setting up gcc (4:5.3.1-1ubuntu1) ...
Setting up libstdc++-5-dev:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up g++-5 (5.4.0-6ubuntu1~16.04.12) ...
Setting up g++ (4:5.3.1-1ubuntu1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up make (4.1-6) ...
Setting up libdpkg-perl (1.18.4ubuntu1.6) ...
Setting up xz-utils (5.1.1alpha+20120614-2ubuntu2) ...
update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode
Setting up patch (2.7.5-1ubuntu0.16.04.2) ...
Setting up dpkg-dev (1.18.4ubuntu1.6) ...
Setting up build-essential (12.1ubuntu2) ...
Setting up libfakeroot:amd64 (1.20.2-1ubuntu1) ...
Setting up fakeroot (1.20.2-1ubuntu1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Setting up fonts-liberation (1.07.4-1) ...
Setting up libavahi-common-data:amd64 (0.6.32~rc+dfsg-1ubuntu2.3) ...
Setting up libavahi-common3:amd64 (0.6.32~rc+dfsg-1ubuntu2.3) ...
Setting up libavahi-client3:amd64 (0.6.32~rc+dfsg-1ubuntu2.3) ...
Setting up libcups2:amd64 (2.1.3-4ubuntu0.10) ...
Setting up libtiff5:amd64 (4.0.6-1ubuntu0.7) ...
Setting up libcupsfilters1:amd64 (1.8.3-2ubuntu3.5) ...
Setting up libcupsimage2:amd64 (2.1.3-4ubuntu0.10) ...
Setting up libijs-0.35:amd64 (0.35-12) ...
Setting up libjbig2dec0 (0.12+20150918-1ubuntu0.1) ...
Setting up liblcms2-2:amd64 (2.6-3ubuntu2.1) ...
Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
Creating config file /etc/papersize with new version
Setting up libgs9-common (9.26~dfsg+0-0ubuntu0.16.04.12) ...
update-alternatives: using /usr/share/ghostscript/9.26 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode
Setting up libgs9:amd64 (9.26~dfsg+0-0ubuntu0.16.04.12) ...
Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1) ...
Setting up ghostscript (9.26~dfsg+0-0ubuntu0.16.04.12) ...
Setting up liberror-perl (0.17-1.2) ...
Setting up git-man (1:2.7.4-0ubuntu1.6) ...
Setting up git (1:2.7.4-0ubuntu1.6) ...
Setting up libcdt5 (2.38.0-12ubuntu2.1) ...
Setting up libcgraph6 (2.38.0-12ubuntu2.1) ...
Setting up libvpx3:amd64 (1.5.0-2ubuntu1) ...
Setting up libxpm4:amd64 (1:3.5.11-1ubuntu0.16.04.1) ...
Setting up libgd3:amd64 (2.1.1-4ubuntu0.16.04.11) ...
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Setting up xvfb (2:1.18.4-0ubuntu0.8) ...
Setting up mesa-utils (8.3.0-1) ...
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Removing intermediate container 1084752102e6
---> 565dc6aca91c
Step 7/46 : RUN apt-get install -y dh-autoreconf libgsl-dev libmotif-dev libtool libx11-dev libxext-dev x11proto-xext-dev x11proto-print-dev xutils-dev
---> Running in e26ee8962084
Reading package lists...
Building dependency tree...
Reading state information...
libtool is already the newest version (2.4.6-0.1).
libtool set to manually installed.
libxext-dev is already the newest version (2:1.3.3-1).
x11proto-xext-dev is already the newest version (7.3.0-1).
x11proto-xext-dev set to manually installed.
libx11-dev is already the newest version (2:1.6.3-1ubuntu2.1).
libx11-dev set to manually installed.
The following additional packages will be installed:
autoconf automake autopoint bsdmainutils debhelper dh-strip-nondeterminism
gettext gettext-base groff-base intltool-debian libarchive-zip-perl
libasprintf-dev libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl
libgettextpo-dev libgettextpo0 libmail-sendmail-perl libmrm4 libpipeline1
libsys-hostname-long-perl libtimedate-perl libuil4 libunistring0 man-db
po-debconf uil
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc groff www-browser libmail-box-perl
The following NEW packages will be installed:
autoconf automake autopoint bsdmainutils debhelper dh-autoreconf
dh-strip-nondeterminism gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libasprintf-dev libasprintf0v5 libcroco3
libfile-stripnondeterminism-perl libgettextpo-dev libgettextpo0 libgsl-dev
libmail-sendmail-perl libmotif-dev libmrm4 libpipeline1
libsys-hostname-long-perl libtimedate-perl libuil4 libunistring0 man-db
po-debconf uil x11proto-print-dev xutils-dev
0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded.
Need to get 10.2 MB of archives.
After this operation, 37.2 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 groff-base amd64 1.22.3-7 [1151 kB]
Get:2 http://archive.ubuntu.com/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB]
Get:5 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libmrm4 amd64 2.3.4-10 [57.0 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libuil4 amd64 2.3.4-10 [126 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3.1 [6568 B]
Get:9 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext-base amd64 0.19.7-2ubuntu3.1 [48.0 kB]
Get:10 http://archive.ubuntu.com/ubuntu xenial/main amd64 autoconf all 2.69-9 [321 kB]
Get:11 http://archive.ubuntu.com/ubuntu xenial/main amd64 automake all 1:1.15-4ubuntu1 [510 kB]
Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 autopoint all 0.19.7-2ubuntu3.1 [406 kB]
Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gettext amd64 0.19.7-2ubuntu3.1 [1082 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 po-debconf all 1.0.19 [234 kB]
Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libarchive-zip-perl all 1.56-2ubuntu0.1 [84.7 kB]
Get:18 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB]
Get:19 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB]
Get:20 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.015-1 [4864 B]
Get:21 http://archive.ubuntu.com/ubuntu xenial/main amd64 debhelper all 9.20160115ubuntu3 [739 kB]
Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 dh-autoreconf all 11 [15.8 kB]
Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libasprintf-dev amd64 0.19.7-2ubuntu3.1 [4778 B]
Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgettextpo0 amd64 0.19.7-2ubuntu3.1 [125 kB]
Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgettextpo-dev amd64 0.19.7-2ubuntu3.1 [141 kB]
Get:26 http://archive.ubuntu.com/ubuntu xenial/main amd64 libgsl-dev amd64 2.1+dfsg-2 [962 kB]
Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 libsys-hostname-long-perl all 1.5-1 [11.7 kB]
Get:28 http://archive.ubuntu.com/ubuntu xenial/main amd64 libmail-sendmail-perl all 0.79.16-1 [26.5 kB]
Get:29 http://archive.ubuntu.com/ubuntu xenial/universe amd64 uil amd64 2.3.4-10 [7330 B]
Get:30 http://archive.ubuntu.com/ubuntu xenial/universe amd64 x11proto-print-dev all 1.0.5-2 [10.7 kB]
Get:31 http://archive.ubuntu.com/ubuntu xenial/universe amd64 xutils-dev amd64 1:7.7+3ubuntu2 [237 kB]
Get:32 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libmotif-dev amd64 2.3.4-10 [2434 kB]
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:amd64 (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
Building database of manual pages ...
Setting up libmrm4:amd64 (2.3.4-10) ...
Setting up libuil4:amd64 (2.3.4-10) ...
Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ...
Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3.1) ...
Setting up gettext-base (0.19.7-2ubuntu3.1) ...
Setting up autoconf (2.69-9) ...
Setting up automake (1:1.15-4ubuntu1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.7-2ubuntu3.1) ...
Setting up libcroco3:amd64 (0.6.11-1) ...
Setting up gettext (0.19.7-2ubuntu3.1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.56-2ubuntu0.1) ...
Setting up libfile-stripnondeterminism-perl (0.015-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libasprintf-dev:amd64 (0.19.7-2ubuntu3.1) ...
Setting up libgettextpo0:amd64 (0.19.7-2ubuntu3.1) ...
Setting up libgettextpo-dev:amd64 (0.19.7-2ubuntu3.1) ...
Setting up libgsl-dev (2.1+dfsg-2) ...
Setting up libsys-hostname-long-perl (1.5-1) ...
Setting up libmail-sendmail-perl (0.79.16-1) ...
Setting up uil (2.3.4-10) ...
Setting up x11proto-print-dev (1.0.5-2) ...
Setting up xutils-dev (1:7.7+3ubuntu2) ...
Setting up libmotif-dev:amd64 (2.3.4-10) ...
Setting up dh-strip-nondeterminism (0.015-1) ...
Setting up debhelper (9.20160115ubuntu3) ...
Setting up dh-autoreconf (11) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Removing intermediate container e26ee8962084
---> e1c3e4a1aaec
Step 8/46 : RUN git clone git://anongit.freedesktop.org/xorg/lib/libXp /tmp/libXp && cd /tmp/libXp && ./autogen.sh && ./configure && make && make install && cd - && rm -rf /tmp/libXp
---> Running in 90061abf76d0
Cloning into '/tmp/libXp'...
autoreconf: Entering directory `.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal
autoreconf: configure.ac: tracing
autoreconf: running: libtoolize --copy
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
autoreconf: running: /usr/bin/autoconf
autoreconf: running: /usr/bin/autoheader
autoreconf: running: automake --add-missing --copy --no-force
configure.ac:39: installing './compile'
configure.ac:39: installing './config.guess'
configure.ac:39: installing './config.sub'
configure.ac:33: installing './install-sh'
configure.ac:33: installing './missing'
src/Makefile.am: installing './depcomp'
autoreconf: Leaving directory `.'
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for gcc option to accept ISO C99... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether __clang__ is declared... no
checking whether __INTEL_COMPILER is declared... no
checking whether __SUNPRO_C is declared... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking if gcc supports -Werror=unknown-warning-option... no
checking if gcc supports -Werror=unused-command-line-argument... no
checking if gcc supports -Wall... yes
checking if gcc supports -Wpointer-arith... yes
checking if gcc supports -Wmissing-declarations... yes
checking if gcc supports -Wformat=2... yes
checking if gcc supports -Wstrict-prototypes... yes
checking if gcc supports -Wmissing-prototypes... yes
checking if gcc supports -Wnested-externs... yes
checking if gcc supports -Wbad-function-cast... yes
checking if gcc supports -Wold-style-definition... yes
checking if gcc supports -Wdeclaration-after-statement... yes
checking if gcc supports -Wunused... yes
checking if gcc supports -Wuninitialized... yes
checking if gcc supports -Wshadow... yes
checking if gcc supports -Wmissing-noreturn... yes
checking if gcc supports -Wmissing-format-attribute... yes
checking if gcc supports -Wredundant-decls... yes
checking if gcc supports -Wlogical-op... yes
checking if gcc supports -Werror=implicit... yes
checking if gcc supports -Werror=nonnull... yes
checking if gcc supports -Werror=init-self... yes
checking if gcc supports -Werror=main... yes
checking if gcc supports -Werror=missing-braces... yes
checking if gcc supports -Werror=sequence-point... yes
checking if gcc supports -Werror=return-type... yes
checking if gcc supports -Werror=trigraphs... yes
checking if gcc supports -Werror=array-bounds... yes
checking if gcc supports -Werror=write-strings... yes
checking if gcc supports -Werror=address... yes
checking if gcc supports -Werror=int-to-pointer-cast... yes
checking if gcc supports -Werror=pointer-to-int-cast... yes
checking if gcc supports -pedantic... yes
checking if gcc supports -Werror... yes
checking if gcc supports -Werror=attributes... yes
checking whether make supports nested variables... (cached) yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for XPRINT... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating man/Makefile
config.status: creating xp.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for gcc option to accept ISO C99... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether __clang__ is declared... no
checking whether __INTEL_COMPILER is declared... no
checking whether __SUNPRO_C is declared... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking if gcc supports -Werror=unknown-warning-option... no
checking if gcc supports -Werror=unused-command-line-argument... no
checking if gcc supports -Wall... yes
checking if gcc supports -Wpointer-arith... yes
checking if gcc supports -Wmissing-declarations... yes
checking if gcc supports -Wformat=2... yes
checking if gcc supports -Wstrict-prototypes... yes
checking if gcc supports -Wmissing-prototypes... yes
checking if gcc supports -Wnested-externs... yes
checking if gcc supports -Wbad-function-cast... yes
checking if gcc supports -Wold-style-definition... yes
checking if gcc supports -Wdeclaration-after-statement... yes
checking if gcc supports -Wunused... yes
checking if gcc supports -Wuninitialized... yes
checking if gcc supports -Wshadow... yes
checking if gcc supports -Wmissing-noreturn... yes
checking if gcc supports -Wmissing-format-attribute... yes
checking if gcc supports -Wredundant-decls... yes
checking if gcc supports -Wlogical-op... yes
checking if gcc supports -Werror=implicit... yes
checking if gcc supports -Werror=nonnull... yes
checking if gcc supports -Werror=init-self... yes
checking if gcc supports -Werror=main... yes
checking if gcc supports -Werror=missing-braces... yes
checking if gcc supports -Werror=sequence-point... yes
checking if gcc supports -Werror=return-type... yes
checking if gcc supports -Werror=trigraphs... yes
checking if gcc supports -Werror=array-bounds... yes
checking if gcc supports -Werror=write-strings... yes
checking if gcc supports -Werror=address... yes
checking if gcc supports -Werror=int-to-pointer-cast... yes
checking if gcc supports -Werror=pointer-to-int-cast... yes
checking if gcc supports -pedantic... yes
checking if gcc supports -Werror... yes
checking if gcc supports -Werror=attributes... yes
checking whether make supports nested variables... (cached) yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for XPRINT... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating man/Makefile
config.status: creating xp.pc
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
make all-recursive
make[1]: Entering directory '/tmp/libXp'
Making all in src
make[2]: Entering directory '/tmp/libXp/src'
CC XpAttr.lo
CC XpContext.lo
CC XpDoc.lo
CC XpExtUtil.lo
CC XpExtVer.lo
XpExtVer.c:67:12: warning: redundant redeclaration of 'XpCheckExtInitUnlocked' [-Wredundant-decls]
extern int XpCheckExtInitUnlocked(
^
In file included from XpExtVer.c:44:0:
XpExtUtil.h:42:12: note: previous declaration of 'XpCheckExtInitUnlocked' was here
extern int XpCheckExtInitUnlocked(
^
CC XpGetData.lo
CC XpImageRes.lo
CC XpInput.lo
CC XpJob.lo
CC XpLocale.lo
CC XpNotifyPdm.lo
CC XpPage.lo
CC XpPageDim.lo
CC XpPrinter.lo
CC XpPutData.lo
CC XpScreens.lo
CCLD libXp.la
ar: `u' modifier ignored since `D' is the default (see `U')
make[2]: Leaving directory '/tmp/libXp/src'
Making all in man
make[2]: Entering directory '/tmp/libXp/man'
GEN libXp.3
GEN XpCancelDoc.3
GEN XpCancelJob.3
GEN XpCancelPage.3
GEN XpCreateContext.3
GEN XpDestroyContext.3
GEN XpEndDoc.3
GEN XpEndJob.3
GEN XpEndPage.3
GEN XpFreePrinterList.3
GEN XpGetAttributes.3
GEN XpGetContext.3
GEN XpGetDocumentData.3
GEN XpGetImageResolution.3
GEN XpGetLocaleHinter.3
GEN XpGetOneAttribute.3
GEN XpGetPageDimensions.3
GEN XpGetPdmStartParams.3
GEN XpGetPrinterList.3
GEN XpGetScreenOfContext.3
GEN XpInputSelected.3
GEN XpPutDocumentData.3
GEN XpQueryExtension.3
GEN XpQueryScreens.3
GEN XpQueryVersion.3
GEN XpRehashPrinterList.3
GEN XpSelectInput.3
GEN XpSetAttributes.3
GEN XpSetContext.3
GEN XpSetImageResolution.3
GEN XpSetLocaleHinter.3
GEN XpStartDoc.3
GEN XpStartJob.3
GEN XpStartPage.3
make[2]: Leaving directory '/tmp/libXp/man'
make[2]: Entering directory '/tmp/libXp'
make[2]: Leaving directory '/tmp/libXp'
make[1]: Leaving directory '/tmp/libXp'
Making install in src
make[1]: Entering directory '/tmp/libXp/src'
make[2]: Entering directory '/tmp/libXp/src'
/bin/mkdir -p '/usr/local/lib'
/bin/bash ../libtool --mode=install /usr/bin/install -c libXp.la '/usr/local/lib'
libtool: install: /usr/bin/install -c .libs/libXp.so.6.2.0 /usr/local/lib/libXp.so.6.2.0
libtool: install: (cd /usr/local/lib && { ln -s -f libXp.so.6.2.0 libXp.so.6 || { rm -f libXp.so.6 && ln -s libXp.so.6.2.0 libXp.so.6; }; })
libtool: install: (cd /usr/local/lib && { ln -s -f libXp.so.6.2.0 libXp.so || { rm -f libXp.so && ln -s libXp.so.6.2.0 libXp.so; }; })
libtool: install: /usr/bin/install -c .libs/libXp.lai /usr/local/lib/libXp.la
libtool: install: /usr/bin/install -c .libs/libXp.a /usr/local/lib/libXp.a
libtool: install: chmod 644 /usr/local/lib/libXp.a
libtool: install: ranlib /usr/local/lib/libXp.a
libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /usr/local/lib
----------------------------------------------------------------------
Libraries have been installed in:
/usr/local/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the '-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the 'LD_RUN_PATH' environment variable
during linking
- use the '-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to '/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/tmp/libXp/src'
make[1]: Leaving directory '/tmp/libXp/src'
Making install in man
make[1]: Entering directory '/tmp/libXp/man'
make[2]: Entering directory '/tmp/libXp/man'
make[2]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/usr/local/share/man/man3'
/usr/bin/install -c -m 644 libXp.3 XpCancelDoc.3 XpCancelJob.3 XpCancelPage.3 XpCreateContext.3 XpDestroyContext.3 XpEndDoc.3 XpEndJob.3 XpEndPage.3 XpFreePrinterList.3 XpGetAttributes.3 XpGetContext.3 XpGetDocumentData.3 XpGetImageResolution.3 XpGetLocaleHinter.3 XpGetOneAttribute.3 XpGetPageDimensions.3 XpGetPdmStartParams.3 XpGetPrinterList.3 XpGetScreenOfContext.3 XpInputSelected.3 XpPutDocumentData.3 XpQueryExtension.3 XpQueryScreens.3 XpQueryVersion.3 XpRehashPrinterList.3 XpSelectInput.3 XpSetAttributes.3 XpSetContext.3 XpSetImageResolution.3 XpSetLocaleHinter.3 XpStartDoc.3 XpStartJob.3 XpStartPage.3 '/usr/local/share/man/man3'
make[2]: Leaving directory '/tmp/libXp/man'
make[1]: Leaving directory '/tmp/libXp/man'
make[1]: Entering directory '/tmp/libXp'
make[2]: Entering directory '/tmp/libXp'
make[2]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/usr/local/lib/pkgconfig'
/usr/bin/install -c -m 644 xp.pc '/usr/local/lib/pkgconfig'
make[2]: Leaving directory '/tmp/libXp'
make[1]: Leaving directory '/tmp/libXp'
/
Removing intermediate container 90061abf76d0
---> dae8f9a05f8e
Step 9/46 : RUN mkdir -p /opt/c3d && curl -sSL "http://downloads.sourceforge.net/project/c3d/c3d/1.0.0/c3d-1.0.0-Linux-x86_64.tar.gz" | tar -xzC /opt/c3d --strip-components 1
---> Running in 3afc1eba7017
Removing intermediate container 3afc1eba7017
---> 6c0aec9bee23
Step 10/46 : ENV C3DPATH /opt/c3d/
---> Running in 1b0d81b2a9d8
Removing intermediate container 1b0d81b2a9d8
---> 68862c96b1eb
Step 11/46 : ENV PATH $C3DPATH/bin:$PATH
---> Running in 1c8ddadfbbc7
Removing intermediate container 1c8ddadfbbc7
---> 6985cb359de7
Step 12/46 : COPY dev/docker_data/required_afni_pkgs.txt /opt/required_afni_pkgs.txt
---> 580477e4586b
Step 13/46 : RUN libs_path=/usr/lib/x86_64-linux-gnu && if [ -f $libs_path/libgsl.so.19 ]; then ln $libs_path/libgsl.so.19 $libs_path/libgsl.so.0; fi && mkdir -p /opt/afni && curl -sO http://s3.amazonaws.com/fcp-indi/resources/linux_openmp_64.zip && unzip -j linux_openmp_64.zip $(cat /opt/required_afni_pkgs.txt) -d /opt/afni && rm -rf linux_openmp_64.zip
---> Running in 088f8fa7ceda
Archive: linux_openmp_64.zip
inflating: /opt/afni/model_conv_diffgamma.so
inflating: /opt/afni/model_sinewave_ap.so
inflating: /opt/afni/3dedge3
inflating: /opt/afni/plug_imreg.so
inflating: /opt/afni/plug_L1fit.so
inflating: /opt/afni/plug_deconvolve.so
inflating: /opt/afni/plug_rename.so
inflating: /opt/afni/plug_notes.so
inflating: /opt/afni/plug_drawdset.so
inflating: /opt/afni/plug_maxima.so
inflating: /opt/afni/plug_clust.so
inflating: /opt/afni/model_diffusion.so
inflating: /opt/afni/model_squarewave_ap.so
inflating: /opt/afni/model_quadratic.so
inflating: /opt/afni/plug_histog_multi.so
inflating: /opt/afni/3dTproject
inflating: /opt/afni/plug_edit.so
inflating: /opt/afni/3dROIstats
inflating: /opt/afni/plug_nlfit.so
inflating: /opt/afni/plug_copy.so
inflating: /opt/afni/plug_retroicor.so
inflating: /opt/afni/plug_permtest.so
inflating: /opt/afni/model_convgamma.so
inflating: /opt/afni/plug_delay_V2.so
inflating: /opt/afni/model_sinewave_apf.so
inflating: /opt/afni/libgts.a
inflating: /opt/afni/plug_roiedit.so
inflating: /opt/afni/3dAutomask
inflating: /opt/afni/libf2c.a
inflating: /opt/afni/3dTstat
inflating: /opt/afni/plug_tag.so
inflating: /opt/afni/3dDetrend
inflating: /opt/afni/plug_hemisub.so
inflating: /opt/afni/plug_3Ddump_V2.so
inflating: /opt/afni/3dBrickStat
inflating: /opt/afni/plug_stavg.so
inflating: /opt/afni/model_expMEMRI3.so
inflating: /opt/afni/3dECM
inflating: /opt/afni/model_conv_PRF_6.so
inflating: /opt/afni/plug_3ddup.so
inflating: /opt/afni/plug_histog.so
inflating: /opt/afni/plug_coorder.so
inflating: /opt/afni/3dDegreeCentrality
inflating: /opt/afni/plug_crender.so
inflating: /opt/afni/3dQwarp
inflating: /opt/afni/plug_afnihistory.so
inflating: /opt/afni/model_expMEMRI.so
inflating: /opt/afni/model_trnglwave_apf.so
inflating: /opt/afni/3dmaskave
inflating: /opt/afni/model_exp.so
inflating: /opt/afni/libmrix.a
inflating: /opt/afni/plug_vol2surf.so
inflating: /opt/afni/3dTcat
inflating: /opt/afni/plug_compress.so
inflating: /opt/afni/afni
inflating: /opt/afni/plug_roiplot.so
inflating: /opt/afni/3dcalc
inflating: /opt/afni/model_convgamma2a.so
inflating: /opt/afni/3dinfo
inflating: /opt/afni/3dSkullStrip
inflating: /opt/afni/model_expr2.so
inflating: /opt/afni/libmri.a
inflating: /opt/afni/model_zero.so
inflating: /opt/afni/libcoxplot.a
inflating: /opt/afni/plug_betafit.so
inflating: /opt/afni/plug_maskave.so
inflating: /opt/afni/3dUnifize
inflating: /opt/afni/plug_fourier.so
inflating: /opt/afni/model_conv_PRF.so
inflating: /opt/afni/plug_threshold.so
inflating: /opt/afni/model_gammavar.so
inflating: /opt/afni/plug_4Ddump.so
inflating: /opt/afni/plug_ttget.so
inflating: /opt/afni/plug_power.so
inflating: /opt/afni/model_michaelis_menton.so
inflating: /opt/afni/3dTshift
inflating: /opt/afni/plug_3dsvm.so
inflating: /opt/afni/plug_nudge.so
inflating: /opt/afni/3dTcorrelate
inflating: /opt/afni/plug_maskcalc.so
inflating: /opt/afni/model_null.so
inflating: /opt/afni/model_diffexp.so
inflating: /opt/afni/model_beta.so
inflating: /opt/afni/plug_extract.so
inflating: /opt/afni/3dBandpass
inflating: /opt/afni/plug_wavelets.so
inflating: /opt/afni/plug_3ddot.so
inflating: /opt/afni/libSUMA.a
inflating: /opt/afni/model_linear.so
inflating: /opt/afni/plug_volreg.so
inflating: /opt/afni/3dvolreg
inflating: /opt/afni/3dmask_tool
inflating: /opt/afni/plug_zeropad.so
inflating: /opt/afni/3dLFCD
inflating: /opt/afni/3dTcorr1D
inflating: /opt/afni/model_demri_3.so
inflating: /opt/afni/3dresample
inflating: /opt/afni/model_conv_cosine4.so
inflating: /opt/afni/R_io.so
inflating: /opt/afni/plug_aslA3D3.so
inflating: /opt/afni/model_trnglwave_ap.so
inflating: /opt/afni/model_squarewave_apf.so
inflating: /opt/afni/plug_stats.so
inflating: /opt/afni/plug_second_dataset.so
inflating: /opt/afni/model_linplusort.so
inflating: /opt/afni/3dpc
inflating: /opt/afni/libGLws.a
inflating: /opt/afni/plug_reorder.so
inflating: /opt/afni/plug_nth_dataset.so
inflating: /opt/afni/plug_realtime.so
inflating: /opt/afni/model_constant.so
inflating: /opt/afni/plug_scatplot.so
inflating: /opt/afni/3drefit
Removing intermediate container 088f8fa7ceda
---> 162bdd6e6889
Step 14/46 : ENV PATH=/opt/afni:$PATH
---> Running in ef4ef206ddbd
Removing intermediate container ef4ef206ddbd
---> 19e63206deb9
Step 15/46 : RUN apt-get install -y --no-install-recommends fsl-core fsl-atlases fsl-mni152-templates
---> Running in 9e57ec096442
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
bc dc fsl-5.0-core fsl-bangor-cerebellar-atlas fsl-harvard-oxford-atlases
fsl-jhu-dti-whitematter-atlas fsl-juelich-histological-atlas
fsl-mni-structural-atlas fsl-oxford-striatal-atlas
fsl-oxford-thalamic-connectivity-atlas
fsl-resting-connectivity-parcellation-atlases fsl-subthalamic-nucleus-atlas
fsl-talairach-daemon-atlas libgdchart-gd2-noxpm libjs-excanvas
libnewmat10ldbl libtcl8.6 libtk8.6 libxss1 tcl tcl8.6 tk tk8.6 tzdata wslu
Suggested packages:
fsl-feeds fsl-5.0-gpu octave mriconvert | dicomnifti fsl-complete condor
| gridengine-client tcl-tclreadline imagemagick
Recommended packages:
fsl-5.0-eddy-nonfree fslview fsl-harvard-oxford-cortical-lateralized-atlas
javascript-common xterm | x-terminal-emulator pulseaudio-utils x11-utils
The following NEW packages will be installed:
bc dc fsl-5.0-core fsl-atlases fsl-bangor-cerebellar-atlas fsl-core
fsl-harvard-oxford-atlases fsl-jhu-dti-whitematter-atlas
fsl-juelich-histological-atlas fsl-mni-structural-atlas fsl-mni152-templates
fsl-oxford-striatal-atlas fsl-oxford-thalamic-connectivity-atlas
fsl-resting-connectivity-parcellation-atlases fsl-subthalamic-nucleus-atlas
fsl-talairach-daemon-atlas libgdchart-gd2-noxpm libjs-excanvas
libnewmat10ldbl libtcl8.6 libtk8.6 libxss1 tcl tcl8.6 tk tk8.6 tzdata wslu
0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded.
Need to get 109 MB of archives.
After this operation, 159 MB of additional disk space will be used.
Get:1 http://neuro.debian.net/debian xenial/non-free amd64 fsl-5.0-core amd64 5.0.9-5~nd16.04+1 [7717 kB]
Get:2 http://neuro.debian.net/debian xenial/non-free amd64 fsl-core all 5.0.9-5~nd16.04+1 [21.5 kB]
Get:3 http://neuro.debian.net/debian data/non-free amd64 fsl-harvard-oxford-atlases all 5.0.7-2 [20.8 MB]
Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B]
Get:5 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 tzdata all 2019c-0ubuntu0.16.04 [168 kB]
Get:6 http://neuro.debian.net/debian data/non-free amd64 fsl-juelich-histological-atlas all 5.0.7-2 [3712 kB]
Get:7 http://neuro.debian.net/debian data/non-free amd64 fsl-jhu-dti-whitematter-atlas all 5.0.7-2 [13.7 MB]
Get:8 http://neuro.debian.net/debian data/non-free amd64 fsl-mni-structural-atlas all 5.0.7-2 [2610 kB]
Get:9 http://neuro.debian.net/debian data/non-free amd64 fsl-talairach-daemon-atlas all 5.0.7-2 [451 kB]
Get:10 http://neuro.debian.net/debian data/non-free amd64 fsl-oxford-thalamic-connectivity-atlas all 5.0.7-2 [221 kB]
Get:11 http://neuro.debian.net/debian data/non-free amd64 fsl-bangor-cerebellar-atlas all 5.0.7-2 [1308 kB]
Get:12 http://neuro.debian.net/debian data/non-free amd64 fsl-mni152-templates all 5.0.7-2 [54.6 MB]
Get:13 http://archive.ubuntu.com/ubuntu xenial/main amd64 bc amd64 1.06.95-9build1 [82.6 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial/main amd64 dc amd64 1.06.95-9build1 [46.4 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 wslu all 2.3.2-0ubuntu2~16.04.0 [46.0 kB]
Get:16 http://neuro.debian.net/debian data/non-free amd64 fsl-oxford-striatal-atlas all 5.0.7-2 [302 kB]
Get:17 http://neuro.debian.net/debian data/non-free amd64 fsl-subthalamic-nucleus-atlas all 5.0.7-2 [25.3 kB]
Get:18 http://neuro.debian.net/debian data/non-free amd64 fsl-resting-connectivity-parcellation-atlases all 5.0.7-2 [1077 kB]
Get:19 http://neuro.debian.net/debian data/non-free amd64 fsl-atlases all 5.0.7-2 [4618 B]
Get:20 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB]
Get:21 http://archive.ubuntu.com/ubuntu xenial/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB]
Get:22 http://archive.ubuntu.com/ubuntu xenial/main amd64 tk8.6 amd64 8.6.5-1 [12.2 kB]
Get:23 http://archive.ubuntu.com/ubuntu xenial/main amd64 tcl8.6 amd64 8.6.5+dfsg-2 [14.2 kB]
Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 tcl amd64 8.6.0+9 [5146 B]
Get:25 http://archive.ubuntu.com/ubuntu xenial/main amd64 tk amd64 8.6.0+9 [3178 B]
Get:26 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libjs-excanvas all 0.r3-4 [45.2 kB]
Get:27 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libgdchart-gd2-noxpm amd64 0.11.5-8 [39.7 kB]
Get:28 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libnewmat10ldbl amd64 1.10.4-5 [176 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 109 MB in 6s (16.9 MB/s)
Selecting previously unselected package libxss1:amd64.
(Reading database ... 36337 files and directories currently installed.)
Preparing to unpack .../libxss1_1%3a1.2.2-1_amd64.deb ...
Unpacking libxss1:amd64 (1:1.2.2-1) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../tzdata_2019c-0ubuntu0.16.04_all.deb ...
Unpacking tzdata (2019c-0ubuntu0.16.04) ...
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Unpacking bc (1.06.95-9build1) ...
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Preparing to unpack .../dc_1.06.95-9build1_amd64.deb ...
Unpacking dc (1.06.95-9build1) ...
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Preparing to unpack .../wslu_2.3.2-0ubuntu2~16.04.0_all.deb ...
Unpacking wslu (2.3.2-0ubuntu2~16.04.0) ...
Selecting previously unselected package libtcl8.6:amd64.
Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ...
Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ...
Selecting previously unselected package libtk8.6:amd64.
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Unpacking libtk8.6:amd64 (8.6.5-1) ...
Selecting previously unselected package tk8.6.
Preparing to unpack .../tk8.6_8.6.5-1_amd64.deb ...
Unpacking tk8.6 (8.6.5-1) ...
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Unpacking tcl8.6 (8.6.5+dfsg-2) ...
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Preparing to unpack .../archives/tcl_8.6.0+9_amd64.deb ...
Unpacking tcl (8.6.0+9) ...
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Unpacking tk (8.6.0+9) ...
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Unpacking libjs-excanvas (0.r3-4) ...
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Unpacking libgdchart-gd2-noxpm (0.11.5-8) ...
Selecting previously unselected package libnewmat10ldbl.
Preparing to unpack .../libnewmat10ldbl_1.10.4-5_amd64.deb ...
Unpacking libnewmat10ldbl (1.10.4-5) ...
Selecting previously unselected package fsl-5.0-core.
Preparing to unpack .../fsl-5.0-core_5.0.9-5~nd16.04+1_amd64.deb ...
Unpacking fsl-5.0-core (5.0.9-5~nd16.04+1) ...
Selecting previously unselected package fsl-core.
Preparing to unpack .../fsl-core_5.0.9-5~nd16.04+1_all.deb ...
Unpacking fsl-core (5.0.9-5~nd16.04+1) ...
Selecting previously unselected package fsl-harvard-oxford-atlases.
Preparing to unpack .../fsl-harvard-oxford-atlases_5.0.7-2_all.deb ...
Unpacking fsl-harvard-oxford-atlases (5.0.7-2) ...
Selecting previously unselected package fsl-juelich-histological-atlas.
Preparing to unpack .../fsl-juelich-histological-atlas_5.0.7-2_all.deb ...
Unpacking fsl-juelich-histological-atlas (5.0.7-2) ...
Selecting previously unselected package fsl-jhu-dti-whitematter-atlas.
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Unpacking fsl-jhu-dti-whitematter-atlas (5.0.7-2) ...
Selecting previously unselected package fsl-mni-structural-atlas.
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Unpacking fsl-mni-structural-atlas (5.0.7-2) ...
Selecting previously unselected package fsl-talairach-daemon-atlas.
Preparing to unpack .../fsl-talairach-daemon-atlas_5.0.7-2_all.deb ...
Unpacking fsl-talairach-daemon-atlas (5.0.7-2) ...
Selecting previously unselected package fsl-oxford-thalamic-connectivity-atlas.
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Unpacking fsl-oxford-thalamic-connectivity-atlas (5.0.7-2) ...
Selecting previously unselected package fsl-bangor-cerebellar-atlas.
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Unpacking fsl-bangor-cerebellar-atlas (5.0.7-2) ...
Selecting previously unselected package fsl-mni152-templates.
Preparing to unpack .../fsl-mni152-templates_5.0.7-2_all.deb ...
Unpacking fsl-mni152-templates (5.0.7-2) ...
Selecting previously unselected package fsl-oxford-striatal-atlas.
Preparing to unpack .../fsl-oxford-striatal-atlas_5.0.7-2_all.deb ...
Unpacking fsl-oxford-striatal-atlas (5.0.7-2) ...
Selecting previously unselected package fsl-subthalamic-nucleus-atlas.
Preparing to unpack .../fsl-subthalamic-nucleus-atlas_5.0.7-2_all.deb ...
Unpacking fsl-subthalamic-nucleus-atlas (5.0.7-2) ...
Selecting previously unselected package fsl-resting-connectivity-parcellation-atlases.
Preparing to unpack .../fsl-resting-connectivity-parcellation-atlases_5.0.7-2_all.deb ...
Unpacking fsl-resting-connectivity-parcellation-atlases (5.0.7-2) ...
Selecting previously unselected package fsl-atlases.
Preparing to unpack .../fsl-atlases_5.0.7-2_all.deb ...
Unpacking fsl-atlases (5.0.7-2) ...
Processing triggers for man-db (2.7.5-1) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Processing triggers for mime-support (3.59ubuntu1) ...
Setting up libxss1:amd64 (1:1.2.2-1) ...
Setting up tzdata (2019c-0ubuntu0.16.04) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
Current default time zone: 'Etc/UTC'
Local time is now: Fri Nov 15 17:34:50 UTC 2019.
Universal Time is now: Fri Nov 15 17:34:50 UTC 2019.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up bc (1.06.95-9build1) ...
Setting up dc (1.06.95-9build1) ...
Setting up wslu (2.3.2-0ubuntu2~16.04.0) ...
update-alternatives: using /usr/bin/wslview to provide /usr/bin/x-www-browser (x-www-browser) in auto mode
update-alternatives: using /usr/bin/wslview to provide /usr/bin/www-browser (www-browser) in auto mode
Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ...
Setting up libtk8.6:amd64 (8.6.5-1) ...
Setting up tk8.6 (8.6.5-1) ...
Setting up tcl8.6 (8.6.5+dfsg-2) ...
Setting up tcl (8.6.0+9) ...
Setting up tk (8.6.0+9) ...
Setting up libjs-excanvas (0.r3-4) ...
Setting up libgdchart-gd2-noxpm (0.11.5-8) ...
Setting up libnewmat10ldbl (1.10.4-5) ...
Setting up fsl-5.0-core (5.0.9-5~nd16.04+1) ...
Setting up fsl-core (5.0.9-5~nd16.04+1) ...
Setting up fsl-harvard-oxford-atlases (5.0.7-2) ...
Setting up fsl-juelich-histological-atlas (5.0.7-2) ...
Setting up fsl-jhu-dti-whitematter-atlas (5.0.7-2) ...
Setting up fsl-mni-structural-atlas (5.0.7-2) ...
Setting up fsl-talairach-daemon-atlas (5.0.7-2) ...
Setting up fsl-oxford-thalamic-connectivity-atlas (5.0.7-2) ...
Setting up fsl-bangor-cerebellar-atlas (5.0.7-2) ...
Setting up fsl-mni152-templates (5.0.7-2) ...
Setting up fsl-oxford-striatal-atlas (5.0.7-2) ...
Setting up fsl-subthalamic-nucleus-atlas (5.0.7-2) ...
Setting up fsl-resting-connectivity-parcellation-atlases (5.0.7-2) ...
Setting up fsl-atlases (5.0.7-2) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Removing intermediate container 9e57ec096442
---> f9634fc3f407
Step 16/46 : ENV FSLDIR=/usr/share/fsl/5.0 FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE POSSUMDIR=/usr/share/fsl/5.0 LD_LIBRARY_PATH=/usr/lib/fsl/5.0:$LD_LIBRARY_PATH FSLTCLSH=/usr/bin/tclsh FSLWISH=/usr/bin/wish PATH=/usr/lib/fsl/5.0:$PATH
---> Running in ab04b9dafb94
Removing intermediate container ab04b9dafb94
---> e9e82d2fb5f7
Step 17/46 : RUN curl -sL http://fcon_1000.projects.nitrc.org/indi/cpac_resources.tar.gz -o /tmp/cpac_resources.tar.gz && tar xfz /tmp/cpac_resources.tar.gz -C /tmp && cp -n /tmp/cpac_image_resources/MNI_3mm/* $FSLDIR/data/standard && cp -n /tmp/cpac_image_resources/MNI_4mm/* $FSLDIR/data/standard && cp -n /tmp/cpac_image_resources/symmetric/* $FSLDIR/data/standard && cp -n /tmp/cpac_image_resources/HarvardOxford-lateral-ventricles-thr25-2mm.nii.gz $FSLDIR/data/atlases/HarvardOxford && cp -nr /tmp/cpac_image_resources/tissuepriors/2mm $FSLDIR/data/standard/tissuepriors && cp -nr /tmp/cpac_image_resources/tissuepriors/3mm $FSLDIR/data/standard/tissuepriors
---> Running in 484ed0ca4d9c
Removing intermediate container 484ed0ca4d9c
---> dc20fc536687
Step 18/46 : RUN mkdir /ants_template && curl -sL https://s3-eu-west-1.amazonaws.com/pfigshare-u-files/3133832/Oasis.zip -o /tmp/Oasis.zip && unzip /tmp/Oasis.zip -d /tmp && mv /tmp/MICCAI2012-Multi-Atlas-Challenge-Data /ants_template/oasis && rm -rf /tmp/Oasis.zip /tmp/MICCAI2012-Multi-Atlas-Challenge-Data
---> Running in 3ba9f8e92ed8
Archive: /tmp/Oasis.zip
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/T_template0.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/T_template0_BrainCerebellum.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/T_template0_BrainCerebellumExtractionMask.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/T_template0_BrainCerebellumMask.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/T_template0_BrainCerebellumProbabilityMask.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/T_template0_BrainCerebellumRegistrationMask.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/T_template0_glm_4labelsJointFusion.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/T_template0_glm_6labelsJointFusion.nii.gz
creating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/Priors2/
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/Priors2/priors1.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/Priors2/priors2.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/Priors2/priors3.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/Priors2/priors4.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/Priors2/priors5.nii.gz
inflating: /tmp/MICCAI2012-Multi-Atlas-Challenge-Data/Priors2/priors6.nii.gz
Removing intermediate container 3ba9f8e92ed8
---> 8b0f7966c746
Step 19/46 : ENV PATH=/usr/lib/ants:$PATH
---> Running in ebc2c686bd53
Removing intermediate container ebc2c686bd53
---> 5553d2c6201c
Step 20/46 : RUN apt-get install -y ants
---> Running in 8e23e87a1b4f
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
environment-modules libaec0 libcharls1 libdouble-conversion1v5
libfftw3-double3 libfftw3-single3 libgdcm2.6 libgfortran3 libhdf5-10
libhdf5-cpp-11 libinsighttoolkit4.9 libjson-c2 libopenjpeg5 libsocket++1
libsz2
Suggested packages:
gridengine-client r-base-core libfftw3-bin libfftw3-dev
The following NEW packages will be installed:
ants environment-modules libaec0 libcharls1 libdouble-conversion1v5
libfftw3-double3 libfftw3-single3 libgdcm2.6 libgfortran3 libhdf5-10
libhdf5-cpp-11 libinsighttoolkit4.9 libjson-c2 libopenjpeg5 libsocket++1
libsz2
0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded.
Need to get 49.8 MB of archives.
After this operation, 412 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjson-c2 amd64 0.11-4ubuntu2 [22.3 kB]
Get:2 http://neuro.debian.net/debian xenial/main amd64 ants amd64 2.2.0-1~nd16.04+1 [40.5 MB]
Get:3 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libcharls1 amd64 1.0-6 [50.1 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfftw3-double3 amd64 3.3.4-2ubuntu1 [718 kB]
Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libfftw3-single3 amd64 3.3.4-2ubuntu1 [749 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial/universe amd64 environment-modules amd64 3.2.10-9 [77.0 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libaec0 amd64 0.3.2-1 [18.0 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libopenjpeg5 amd64 1:1.5.2-3.1 [104 kB]
Get:9 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libsocket++1 amd64 1.12.13-8wily1 [38.6 kB]
Get:10 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libgdcm2.6 amd64 2.6.3-3ubuntu3 [1801 kB]
Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.12 [260 kB]
Get:12 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libsz2 amd64 0.3.2-1 [5048 B]
Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 libhdf5-10 amd64 1.8.16+docs-4ubuntu1.1 [997 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 libhdf5-cpp-11 amd64 1.8.16+docs-4ubuntu1.1 [102 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 libdouble-conversion1v5 amd64 2.0.1-3ubuntu2 [33.3 kB]
Get:16 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 libinsighttoolkit4.9 amd64 4.9.0-4ubuntu1.1 [4264 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 49.8 MB in 6s (8234 kB/s)
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Processing triggers for man-db (2.7.5-1) ...
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Setting up libjson-c2:amd64 (0.11-4ubuntu2) ...
Setting up libcharls1:amd64 (1.0-6) ...
Setting up libfftw3-double3:amd64 (3.3.4-2ubuntu1) ...
Setting up libfftw3-single3:amd64 (3.3.4-2ubuntu1) ...
Setting up environment-modules (3.2.10-9) ...
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Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.12) ...
Setting up libsz2:amd64 (0.3.2-1) ...
Setting up libhdf5-10:amd64 (1.8.16+docs-4ubuntu1.1) ...
Setting up libhdf5-cpp-11:amd64 (1.8.16+docs-4ubuntu1.1) ...
Setting up libdouble-conversion1v5:amd64 (2.0.1-3ubuntu2) ...
Setting up libinsighttoolkit4.9 (4.9.0-4ubuntu1.1) ...
Setting up ants (2.2.0-1~nd16.04+1) ...
Processing triggers for libc-bin (2.23-0ubuntu11) ...
Removing intermediate container 8e23e87a1b4f
---> d6d7547b0a52
Step 21/46 : RUN mkdir -p /opt/ICA-AROMA
---> Running in 6feab1368095
Removing intermediate container 6feab1368095
---> 54f5e7ff365b
Step 22/46 : RUN curl -sL https://github.com/rhr-pruim/ICA-AROMA/archive/v0.4.3-beta.tar.gz | tar -xzC /opt/ICA-AROMA --strip-components 1
---> Running in 2926ac5069f5
Removing intermediate container 2926ac5069f5
---> 6a374d28cf4a
Step 23/46 : RUN chmod +x /opt/ICA-AROMA/ICA_AROMA.py
---> Running in 13d88c9f88a5
Removing intermediate container 13d88c9f88a5
---> 383c040b3792
Step 24/46 : ENV PATH=/opt/ICA-AROMA:$PATH
---> Running in 3e80fb0566c2
Removing intermediate container 3e80fb0566c2
---> a0c65ec875ab
Step 25/46 : RUN curl -sO https://repo.continuum.io/miniconda/Miniconda-3.8.3-Linux-x86_64.sh && bash Miniconda-3.8.3-Linux-x86_64.sh -b -p /usr/local/miniconda && rm Miniconda-3.8.3-Linux-x86_64.sh
---> Running in 5fd16b206088
PREFIX=/usr/local/miniconda
installing: python-2.7.9-1 ...
installing: conda-env-2.0.1-py27_0 ...
installing: openssl-1.0.1k-0 ...
installing: pycosat-0.6.1-py27_0 ...
installing: pyyaml-3.11-py27_0 ...
installing: readline-6.2-2 ...
installing: requests-2.5.1-py27_0 ...
installing: sqlite-3.8.4.1-0 ...
installing: system-5.8-1 ...
installing: tk-8.5.15-0 ...
installing: yaml-0.1.4-0 ...
installing: zlib-1.2.8-0 ...
installing: conda-3.8.3-py27_0 ...
Python 2.7.9 :: Continuum Analytics, Inc.
creating default environment...
installation finished.
Removing intermediate container 5fd16b206088
---> 21f94f8302a7
Step 26/46 : ENV PATH=/usr/local/miniconda/bin:$PATH
---> Running in 5166e784fc2c
Removing intermediate container 5166e784fc2c
---> b4fc92983aa8
Step 27/46 : RUN conda install -y blas
---> Running in 0ab534892994
Fetching package metadata: ..
Solving package specifications: .
Package plan for installation in environment /usr/local/miniconda:
The following packages will be downloaded:
package | build
---------------------------|-----------------
sqlite-3.13.0 | 0 4.0 MB
conda-env-2.6.0 | 0 502 B
blas-1.0 | openblas 48 KB
zlib-1.2.11 | 0 109 KB
openssl-1.0.2l | 0 3.2 MB
yaml-0.1.6 | 0 246 KB
tk-8.5.18 | 0 1.9 MB
libffi-3.2.1 | 1 38 KB
python-2.7.13 | 0 11.5 MB
enum34-1.1.6 | py27_0 53 KB
idna-2.6 | py27_0 122 KB
pycosat-0.6.2 | py27_0 194 KB
six-1.10.0 | py27_0 16 KB
pycparser-2.18 | py27_0 165 KB
pyparsing-2.2.0 | py27_0 94 KB
certifi-2016.2.28 | py27_0 211 KB
ipaddress-1.0.18 | py27_0 31 KB
requests-2.14.2 | py27_0 700 KB
asn1crypto-0.22.0 | py27_0 145 KB
ruamel_yaml-0.11.14 | py27_1 361 KB
packaging-16.8 | py27_0 30 KB
cffi-1.10.0 | py27_0 329 KB
setuptools-36.4.0 | py27_1 557 KB
cryptography-1.8.1 | py27_0 850 KB
pyopenssl-17.0.0 | py27_0 74 KB
conda-4.3.30 | py27h6ae6dc7_0 507 KB
------------------------------------------------------------
Total: 25.3 MB
The following NEW packages will be INSTALLED:
asn1crypto: 0.22.0-py27_0
blas: 1.0-openblas
certifi: 2016.2.28-py27_0
cffi: 1.10.0-py27_0
cryptography: 1.8.1-py27_0
enum34: 1.1.6-py27_0
idna: 2.6-py27_0
ipaddress: 1.0.18-py27_0
libffi: 3.2.1-1
packaging: 16.8-py27_0
pycparser: 2.18-py27_0
pyopenssl: 17.0.0-py27_0
pyparsing: 2.2.0-py27_0
ruamel_yaml: 0.11.14-py27_1
setuptools: 36.4.0-py27_1
six: 1.10.0-py27_0
The following packages will be UPDATED:
conda: 3.8.3-py27_0 --> 4.3.30-py27h6ae6dc7_0
conda-env: 2.0.1-py27_0 --> 2.6.0-0
openssl: 1.0.1k-0 --> 1.0.2l-0
pycosat: 0.6.1-py27_0 --> 0.6.2-py27_0
python: 2.7.9-1 --> 2.7.13-0
requests: 2.5.1-py27_0 --> 2.14.2-py27_0
sqlite: 3.8.4.1-0 --> 3.13.0-0
tk: 8.5.15-0 --> 8.5.18-0
yaml: 0.1.4-0 --> 0.1.6-0
zlib: 1.2.8-0 --> 1.2.11-0
Fetching packages ...
sqlite-3.13.0- 100% |###############################| Time: 0:00:00 83.94 MB/s
conda-env-2.6. 100% |###############################| Time: 0:00:00 652.68 kB/s
blas-1.0-openb 100% |###############################| Time: 0:00:00 23.28 MB/s
zlib-1.2.11-0. 100% |###############################| Time: 0:00:00 30.32 MB/s
openssl-1.0.2l 100% |###############################| Time: 0:00:00 67.80 MB/s
yaml-0.1.6-0.t 100% |###############################| Time: 0:00:00 39.90 MB/s
tk-8.5.18-0.ta 100% |###############################| Time: 0:00:00 67.68 MB/s
libffi-3.2.1-1 100% |###############################| Time: 0:00:00 22.21 MB/s
python-2.7.13- 100% |###############################| Time: 0:00:00 67.28 MB/s
enum34-1.1.6-p 100% |###############################| Time: 0:00:00 42.28 MB/s
idna-2.6-py27_ 100% |###############################| Time: 0:00:00 48.47 MB/s
pycosat-0.6.2- 100% |###############################| Time: 0:00:00 27.32 MB/s
six-1.10.0-py2 100% |###############################| Time: 0:00:00 14.41 MB/s
pycparser-2.18 100% |###############################| Time: 0:00:00 30.47 MB/s
pyparsing-2.2. 100% |###############################| Time: 0:00:00 36.51 MB/s
certifi-2016.2 100% |###############################| Time: 0:00:00 31.18 MB/s
ipaddress-1.0. 100% |###############################| Time: 0:00:00 20.78 MB/s
requests-2.14. 100% |###############################| Time: 0:00:00 53.86 MB/s
asn1crypto-0.2 100% |###############################| Time: 0:00:00 36.02 MB/s
ruamel_yaml-0. 100% |###############################| Time: 0:00:00 39.68 MB/s
packaging-16.8 100% |###############################| Time: 0:00:00 23.20 MB/s
cffi-1.10.0-py 100% |###############################| Time: 0:00:00 43.19 MB/s
setuptools-36. 100% |###############################| Time: 0:00:00 51.29 MB/s
cryptography-1 100% |###############################| Time: 0:00:00 53.19 MB/s
pyopenssl-17.0 100% |###############################| Time: 0:00:00 28.87 MB/s
conda-4.3.30-p 100% |###############################| Time: 0:00:00 45.82 MB/s
Extracting packages ...
[ COMPLETE ] |#################################################| 100%
Unlinking packages ...
[ COMPLETE ] |#################################################| 100%
Linking packages ...
[ COMPLETE ] |#################################################| 100%
Removing intermediate container 0ab534892994
---> b854bba2f62f
Step 28/46 : RUN conda install -y cython==0.26 matplotlib=2.0.2 networkx==1.11 nose==1.3.7 numpy==1.13.0 pandas==0.23.4 scipy==1.2.1 traits==4.6.0 wxpython==3.0.0.0 pip
---> Running in 77e4acf9164b
Fetching package metadata ...........
Solving package specifications: .
Package plan for installation in environment /usr/local/miniconda:
The following NEW packages will be INSTALLED:
_libgcc_mutex: 0.1-main
backports_abc: 0.5-py_0
chardet: 3.0.4-py27_1003
conda-package-handling: 1.6.0-py27h7b6447c_0
cycler: 0.10.0-py27_0
cython: 0.26-py27_0
dbus: 1.13.12-h746ee38_0
decorator: 4.4.1-py_0
expat: 2.2.6-he6710b0_0
fontconfig: 2.12.6-h49f89f6_0
freetype: 2.8-hab7d2ae_1
functools32: 3.2.3.2-py27_1
futures: 3.3.0-py27_0
glib: 2.63.1-h5a9c865_0
gst-plugins-base: 1.12.4-h33fb286_0
gstreamer: 1.12.4-hb53b477_0
icu: 58.2-h9c2bf20_1
jpeg: 9b-h024ee3a_2
libedit: 3.1-heed3624_0
libgcc-ng: 9.1.0-hdf63c60_0
libgfortran: 3.0.0-1
libgfortran-ng: 7.3.0-hdf63c60_0
libopenblas: 0.3.6-h5a2b251_2
libpng: 1.6.37-hbc83047_0
libstdcxx-ng: 9.1.0-hdf63c60_0
libxcb: 1.13-h1bed415_1
libxml2: 2.9.9-hea5a465_1
matplotlib: 2.0.2-py27h334a7c2_1
ncurses: 6.0-h9df7e31_2
networkx: 1.11-py27_1
nose: 1.3.7-py27_2
numpy: 1.13.0-py27_nomkl_0
openblas: 0.2.19-0
pandas: 0.23.4-py27h04863e7_0
pcre: 8.43-he6710b0_0
pip: 19.3.1-py27_0
pyqt: 5.6.0-py27h22d08a2_6
pysocks: 1.7.1-py27_0
python-dateutil: 2.8.1-py_0
pytz: 2019.3-py_0
qt: 5.6.2-h974d657_12
scipy: 1.2.1-py27he2b7bc3_0
singledispatch: 3.4.0.3-py27_0
sip: 4.18.1-py27hf484d3e_2
subprocess32: 3.5.4-py27h7b6447c_0
tornado: 5.1.1-py27h7b6447c_0
tqdm: 4.36.1-py_0
traits: 4.6.0-py27h7b6447c_3
urllib3: 1.24.2-py27_0
wheel: 0.33.6-py27_0
wxpython: 3.0.0.0-py27_2
xz: 5.2.4-h14c3975_4
The following packages will be UPDATED:
certifi: 2016.2.28-py27_0 --> 2019.9.11-py27_0
conda: 4.3.30-py27h6ae6dc7_0 --> 4.7.12-py27_0
conda-env: 2.6.0-0 --> 2.6.0-1
pycosat: 0.6.2-py27_0 --> 0.6.3-py27h14c3975_0
python: 2.7.13-0 --> 2.7.14-h89e7a4a_22
pyyaml: 3.11-py27_0 <unknown> --> 3.12-py27h2d70dd7_1
readline: 6.2-2 <unknown> --> 7.0-ha6073c6_4
requests: 2.14.2-py27_0 --> 2.22.0-py27_0
sqlite: 3.13.0-0 --> 3.23.1-he433501_0
tk: 8.5.18-0 --> 8.6.8-hbc83047_0
_libgcc_mutex- 100% |###############################| Time: 0:00:00 3.39 MB/s
conda-env-2.6. 100% |###############################| Time: 0:00:00 4.41 MB/s
libgfortran-3. 100% |###############################| Time: 0:00:00 26.65 MB/s
libgfortran-ng 100% |###############################| Time: 0:00:00 48.53 MB/s
libstdcxx-ng-9 100% |###############################| Time: 0:00:00 62.24 MB/s
libgcc-ng-9.1. 100% |###############################| Time: 0:00:00 63.61 MB/s
openblas-0.2.1 100% |###############################| Time: 0:00:00 63.77 MB/s
expat-2.2.6-he 100% |###############################| Time: 0:00:00 35.62 MB/s
icu-58.2-h9c2b 100% |###############################| Time: 0:00:00 63.69 MB/s
jpeg-9b-h024ee 100% |###############################| Time: 0:00:00 61.31 MB/s
libopenblas-0. 100% |###############################| Time: 0:00:00 64.31 MB/s
libpng-1.6.37- 100% |###############################| Time: 0:00:00 48.24 MB/s
libxcb-1.13-h1 100% |###############################| Time: 0:00:00 17.73 MB/s
ncurses-6.0-h9 100% |###############################| Time: 0:00:00 52.28 MB/s
pcre-8.43-he67 100% |###############################| Time: 0:00:00 64.39 MB/s
tk-8.6.8-hbc83 100% |###############################| Time: 0:00:00 52.89 MB/s
xz-5.2.4-h14c3 100% |###############################| Time: 0:00:00 42.99 MB/s
freetype-2.8-h 100% |###############################| Time: 0:00:00 45.49 MB/s
glib-2.63.1-h5 100% |###############################| Time: 0:00:00 58.85 MB/s
libedit-3.1-he 100% |###############################| Time: 0:00:00 46.36 MB/s
libxml2-2.9.9- 100% |###############################| Time: 0:00:00 59.55 MB/s
readline-7.0-h 100% |###############################| Time: 0:00:00 55.19 MB/s
dbus-1.13.12-h 100% |###############################| Time: 0:00:00 53.88 MB/s
fontconfig-2.1 100% |###############################| Time: 0:00:00 66.39 MB/s
gstreamer-1.12 100% |###############################| Time: 0:00:00 60.17 MB/s
sqlite-3.23.1- 100% |###############################| Time: 0:00:00 56.38 MB/s
gst-plugins-ba 100% |###############################| Time: 0:00:00 64.92 MB/s
python-2.7.14- 100% |###############################| Time: 0:00:00 63.32 MB/s
backports_abc- 100% |###############################| Time: 0:00:00 32.47 MB/s
certifi-2019.9 100% |###############################| Time: 0:00:00 43.72 MB/s
chardet-3.0.4- 100% |###############################| Time: 0:00:00 41.53 MB/s
cython-0.26-py 100% |###############################| Time: 0:00:00 63.82 MB/s
decorator-4.4. 100% |###############################| Time: 0:00:00 32.59 MB/s
functools32-3. 100% |###############################| Time: 0:00:00 26.75 MB/s
futures-3.3.0- 100% |###############################| Time: 0:00:00 24.78 MB/s
numpy-1.13.0-p 100% |###############################| Time: 0:00:00 61.72 MB/s
pycosat-0.6.3- 100% |###############################| Time: 0:00:00 61.59 MB/s
pysocks-1.7.1- 100% |###############################| Time: 0:00:00 33.72 MB/s
pytz-2019.3-py 100% |###############################| Time: 0:00:00 38.05 MB/s
pyyaml-3.12-py 100% |###############################| Time: 0:00:00 37.17 MB/s
qt-5.6.2-h974d 100% |###############################| Time: 0:00:00 64.06 MB/s
sip-4.18.1-py2 100% |###############################| Time: 0:00:00 29.35 MB/s
subprocess32-3 100% |###############################| Time: 0:00:00 20.31 MB/s
tqdm-4.36.1-py 100% |###############################| Time: 0:00:00 48.54 MB/s
traits-4.6.0-p 100% |###############################| Time: 0:00:00 39.81 MB/s
wxpython-3.0.0 100% |###############################| Time: 0:00:00 63.71 MB/s
conda-package- 100% |###############################| Time: 0:00:00 53.37 MB/s
cycler-0.10.0- 100% |###############################| Time: 0:00:00 32.81 MB/s
networkx-1.11- 100% |###############################| Time: 0:00:00 57.73 MB/s
pyqt-5.6.0-py2 100% |###############################| Time: 0:00:00 62.54 MB/s
python-dateuti 100% |###############################| Time: 0:00:00 63.17 MB/s
scipy-1.2.1-py 100% |###############################| Time: 0:00:00 64.14 MB/s
singledispatch 100% |###############################| Time: 0:00:00 36.33 MB/s
nose-1.3.7-py2 100% |###############################| Time: 0:00:00 45.78 MB/s
pandas-0.23.4- 100% |###############################| Time: 0:00:00 64.18 MB/s
tornado-5.1.1- 100% |###############################| Time: 0:00:00 50.35 MB/s
wheel-0.33.6-p 100% |###############################| Time: 0:00:00 27.40 MB/s
matplotlib-2.0 100% |###############################| Time: 0:00:00 60.02 MB/s
pip-19.3.1-py2 100% |###############################| Time: 0:00:00 65.04 MB/s
urllib3-1.24.2 100% |###############################| Time: 0:00:00 45.13 MB/s
requests-2.22. 100% |###############################| Time: 0:00:00 40.99 MB/s
conda-4.7.12-p 100% |###############################| Time: 0:00:00 56.47 MB/s
Removing intermediate container 77e4acf9164b
---> e69e8054f913
Step 29/46 : COPY requirements.txt /opt/requirements.txt
---> 2f8f0377957f
Step 30/46 : RUN pip install --upgrade pip==9.0.1
---> Running in aca7a9ef2d2a
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Collecting pip==9.0.1
Downloading https://files.pythonhosted.org/packages/b6/ac/7015eb97dc749283ffdec1c3a88ddb8ae03b8fad0f0e611408f196358da3/pip-9.0.1-py2.py3-none-any.whl (1.3MB)
Installing collected packages: pip
Found existing installation: pip 19.3.1
Uninstalling pip-19.3.1:
Successfully uninstalled pip-19.3.1
Successfully installed pip-9.0.1
Removing intermediate container aca7a9ef2d2a
---> e7f9498fe5b9
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Collecting boto3==1.7.37 (from -r /opt/requirements.txt (line 1))
Downloading https://files.pythonhosted.org/packages/2f/e0/b9e3b23e100e0df42d3646e1d126a0f5e3d738921be142a2f0133ed502a5/boto3-1.7.37-py2.py3-none-any.whl (128kB)
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Downloading https://files.pythonhosted.org/packages/34/c1/8806f99713ddb993c5366c362b2f908f18269f8d792aff1abfd700775a77/click-6.7-py2.py3-none-any.whl (71kB)
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Collecting future==0.16.0 (from -r /opt/requirements.txt (line 5))
Downloading https://files.pythonhosted.org/packages/00/2b/8d082ddfed935f3608cc61140df6dcbf0edea1bc3ab52fb6c29ae3e81e85/future-0.16.0.tar.gz (824kB)
Collecting INDI-Tools==0.0.6 (from -r /opt/requirements.txt (line 6))
Downloading https://files.pythonhosted.org/packages/33/1f/f485af10772d28b8bccb9e5aae8ad6fe190f61bc1f3a01ca8309bcb87f79/INDI_Tools-0.0.6-py2-none-any.whl
Collecting lockfile==0.12.2 (from -r /opt/requirements.txt (line 7))
Downloading https://files.pythonhosted.org/packages/c8/22/9460e311f340cb62d26a38c419b1381b8593b0bb6b5d1f056938b086d362/lockfile-0.12.2-py2.py3-none-any.whl
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Requirement already satisfied: networkx==1.11 in /usr/local/miniconda/lib/python2.7/site-packages (from -r /opt/requirements.txt (line 9))
Collecting nibabel==2.3.0 (from -r /opt/requirements.txt (line 10))
Downloading https://files.pythonhosted.org/packages/d9/f0/008aa42c3bd42d101cfcd5418643364a4b3dd2322de3e8b3d6c644ae0fb0/nibabel-2.3.0.tar.gz (4.2MB)
Collecting nilearn==0.4.1 (from -r /opt/requirements.txt (line 11))
Downloading https://files.pythonhosted.org/packages/6c/a2/0a528aff1c755f98538b18bd49765eae83c6a4da99b27f51baddb6ec5b45/nilearn-0.4.1.tar.gz (894kB)
Collecting nipype==1.1.2 (from -r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/3a/64/de4611719e708e21101ac55cc10d6e3eb3d7ccdebbc9c66a3f042fddceb6/nipype-1.1.2-py2.py3-none-any.whl (3.2MB)
Requirement already satisfied: nose==1.3.7 in /usr/local/miniconda/lib/python2.7/site-packages (from -r /opt/requirements.txt (line 13))
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Requirement already satisfied: pandas==0.23.4 in /usr/local/miniconda/lib/python2.7/site-packages (from -r /opt/requirements.txt (line 15))
Collecting patsy==0.5.0 (from -r /opt/requirements.txt (line 16))
Downloading https://files.pythonhosted.org/packages/5d/eb/92c4b45ca47a2dd1339c958636e083b50ffadb5162a599a1cbbe92f89832/patsy-0.5.0-py2.py3-none-any.whl (232kB)
Collecting prov==1.5.0 (from -r /opt/requirements.txt (line 17))
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Collecting psutil==5.4.6 (from -r /opt/requirements.txt (line 18))
Downloading https://files.pythonhosted.org/packages/51/9e/0f8f5423ce28c9109807024f7bdde776ed0b1161de20b408875de7e030c3/psutil-5.4.6.tar.gz (418kB)
Collecting python-dateutil==2.7.3 (from -r /opt/requirements.txt (line 19))
Downloading https://files.pythonhosted.org/packages/cf/f5/af2b09c957ace60dcfac112b669c45c8c97e32f94aa8b56da4c6d1682825/python_dateutil-2.7.3-py2.py3-none-any.whl (211kB)
Collecting pyyaml==4.2b1 (from -r /opt/requirements.txt (line 20))
Downloading https://files.pythonhosted.org/packages/bd/da/0a49c1a31c60634b93fd1376b3b7966c4f81f2da8263f389cad5b6bbd6e8/PyYAML-4.2b1.tar.gz (263kB)
Collecting requests==2.21.0 (from -r /opt/requirements.txt (line 21))
Downloading https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl (57kB)
Requirement already satisfied: scipy==1.2.1 in /usr/local/miniconda/lib/python2.7/site-packages (from -r /opt/requirements.txt (line 22))
Collecting simplejson==3.15.0 (from -r /opt/requirements.txt (line 23))
Downloading https://files.pythonhosted.org/packages/8b/6c/c512c32124d1d2d67a32ff867bb3cdd5bfa6432660975f7ee753ed7ad886/simplejson-3.15.0.tar.gz (80kB)
Collecting scikit-learn==0.19.1 (from -r /opt/requirements.txt (line 24))
Downloading https://files.pythonhosted.org/packages/c4/b8/eb447f84e0012b0bce97d12d1bc6ea6882b4ed9eb7faaca00e8f627733fb/scikit_learn-0.19.1-cp27-cp27mu-manylinux1_x86_64.whl (12.2MB)
Requirement already satisfied: traits==4.6.0 in /usr/local/miniconda/lib/python2.7/site-packages (from -r /opt/requirements.txt (line 25))
Collecting PyBASC==0.4.5 (from -r /opt/requirements.txt (line 26))
Downloading https://files.pythonhosted.org/packages/22/96/78f8c661d4911b6bca2995c718a789bcd673da56493619279c45ff2854d8/PyBASC-0.4.5-py2.py3-none-any.whl (44.5MB)
Collecting pathlib==1.0.1 (from -r /opt/requirements.txt (line 27))
Downloading https://files.pythonhosted.org/packages/ac/aa/9b065a76b9af472437a0059f77e8f962fe350438b927cb80184c32f075eb/pathlib-1.0.1.tar.gz (49kB)
Collecting botocore<1.11.0,>=1.10.37 (from boto3==1.7.37->-r /opt/requirements.txt (line 1))
Downloading https://files.pythonhosted.org/packages/01/b7/cb08cd1af2bb0d0dfb393101a93b6ab6fb80f109ab7b37f2f34386c11351/botocore-1.10.84-py2.py3-none-any.whl (4.5MB)
Collecting jmespath<1.0.0,>=0.7.1 (from boto3==1.7.37->-r /opt/requirements.txt (line 1))
Downloading https://files.pythonhosted.org/packages/83/94/7179c3832a6d45b266ddb2aac329e101367fbdb11f425f13771d27f225bb/jmespath-0.9.4-py2.py3-none-any.whl
Collecting s3transfer<0.2.0,>=0.1.10 (from boto3==1.7.37->-r /opt/requirements.txt (line 1))
Downloading https://files.pythonhosted.org/packages/d7/14/2a0004d487464d120c9fb85313a75cd3d71a7506955be458eebfe19a6b1d/s3transfer-0.1.13-py2.py3-none-any.whl (59kB)
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Requirement already satisfied: pytz in /usr/local/miniconda/lib/python2.7/site-packages (from matplotlib==2.0.2->-r /opt/requirements.txt (line 8))
Requirement already satisfied: cycler>=0.10 in /usr/local/miniconda/lib/python2.7/site-packages (from matplotlib==2.0.2->-r /opt/requirements.txt (line 8))
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 in /usr/local/miniconda/lib/python2.7/site-packages (from matplotlib==2.0.2->-r /opt/requirements.txt (line 8))
Requirement already satisfied: decorator>=3.4.0 in /usr/local/miniconda/lib/python2.7/site-packages (from networkx==1.11->-r /opt/requirements.txt (line 9))
Requirement already satisfied: packaging in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->-r /opt/requirements.txt (line 12))
Collecting funcsigs (from nipype==1.1.2->-r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl
Collecting pydot>=1.2.3 (from nipype==1.1.2->-r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/33/d1/b1479a770f66d962f545c2101630ce1d5592d90cb4f083d38862e93d16d2/pydot-1.4.1-py2.py3-none-any.whl
Collecting pytest>=3.0 (from nipype==1.1.2->-r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/64/f1/187a98b8f913a8f3a53d213cca2fae19718565f36165804d7f4f91fe5b76/pytest-4.6.6-py2.py3-none-any.whl (230kB)
Collecting pytest-xdist (from nipype==1.1.2->-r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/f7/80/2af1fc039f779f61c7207dc9f79a1479874e7795f869fddaf135efde1cd4/pytest_xdist-1.30.0-py2.py3-none-any.whl
Collecting mock (from nipype==1.1.2->-r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/05/d2/f94e68be6b17f46d2c353564da56e6fb89ef09faeeff3313a046cb810ca9/mock-3.0.5-py2.py3-none-any.whl
Requirement already satisfied: futures; python_version == "2.7" in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->-r /opt/requirements.txt (line 12))
Collecting pydotplus (from nipype==1.1.2->-r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/60/bf/62567830b700d9f6930e9ab6831d6ba256f7b0b730acb37278b0ccdffacf/pydotplus-2.0.2.tar.gz (278kB)
Collecting lxml (from prov==1.5.0->-r /opt/requirements.txt (line 17))
Downloading https://files.pythonhosted.org/packages/e4/f4/65d145cd6917131826050b0479be35aaccba2847b7f80fc4afc6bec6616b/lxml-4.4.1-cp27-cp27mu-manylinux1_x86_64.whl (5.7MB)
Collecting rdflib>=4.2.1 (from prov==1.5.0->-r /opt/requirements.txt (line 17))
Downloading https://files.pythonhosted.org/packages/c5/77/1fa0f4cffd5faad496b1344ab665902bb2609f56e0fb19bcf80cff485da0/rdflib-4.2.2.tar.gz (905kB)
Requirement already satisfied: urllib3<1.25,>=1.21.1 in /usr/local/miniconda/lib/python2.7/site-packages (from requests==2.21.0->-r /opt/requirements.txt (line 21))
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/miniconda/lib/python2.7/site-packages (from requests==2.21.0->-r /opt/requirements.txt (line 21))
Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/miniconda/lib/python2.7/site-packages (from requests==2.21.0->-r /opt/requirements.txt (line 21))
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/miniconda/lib/python2.7/site-packages (from requests==2.21.0->-r /opt/requirements.txt (line 21))
Collecting docutils>=0.10 (from botocore<1.11.0,>=1.10.37->boto3==1.7.37->-r /opt/requirements.txt (line 1))
Downloading https://files.pythonhosted.org/packages/3a/dc/bf2b15d1fa15a6f7a9e77a61b74ecbbae7258558fcda8ffc9a6638a6b327/docutils-0.15.2-py2-none-any.whl (548kB)
Collecting importlib-metadata>=0.12; python_version < "3.8" (from pytest>=3.0->nipype==1.1.2->-r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/f6/d2/40b3fa882147719744e6aa50ac39cf7a22a913cbcba86a0371176c425a3b/importlib_metadata-0.23-py2.py3-none-any.whl
Collecting wcwidth (from pytest>=3.0->nipype==1.1.2->-r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/7e/9f/526a6947247599b084ee5232e4f9190a38f398d7300d866af3ab571a5bfe/wcwidth-0.1.7-py2.py3-none-any.whl
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Downloading https://files.pythonhosted.org/packages/92/c7/48439f7d5fd6bddb4c04b850bb862b42e3e2b98570040dfaf68aedd8114b/pluggy-0.13.0-py2.py3-none-any.whl
Collecting pathlib2>=2.2.0; python_version < "3.6" (from pytest>=3.0->nipype==1.1.2->-r /opt/requirements.txt (line 12))
Downloading https://files.pythonhosted.org/packages/e9/45/9c82d3666af4ef9f221cbb954e1d77ddbb513faf552aea6df5f37f1a4859/pathlib2-2.3.5-py2.py3-none-any.whl
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Building wheels for collected packages: future, nibabel, nilearn, psutil, pyyaml, simplejson, pathlib, pydotplus, rdflib, scandir
Running setup.py bdist_wheel for future: started
Running setup.py bdist_wheel for future: finished with status 'done'
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Running setup.py bdist_wheel for nibabel: started
Running setup.py bdist_wheel for nibabel: finished with status 'done'
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Running setup.py bdist_wheel for nilearn: started
Running setup.py bdist_wheel for nilearn: finished with status 'done'
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Running setup.py bdist_wheel for psutil: started
Running setup.py bdist_wheel for psutil: finished with status 'done'
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Running setup.py bdist_wheel for pyyaml: started
Running setup.py bdist_wheel for pyyaml: finished with status 'done'
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Running setup.py bdist_wheel for simplejson: finished with status 'done'
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Running setup.py bdist_wheel for pathlib: finished with status 'done'
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Running setup.py bdist_wheel for pydotplus: finished with status 'done'
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Running setup.py bdist_wheel for scandir: finished with status 'done'
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Successfully built future nibabel nilearn psutil pyyaml simplejson pathlib pydotplus rdflib scandir
Installing collected packages: jmespath, docutils, python-dateutil, botocore, s3transfer, boto3, click, configparser, future, INDI-Tools, lockfile, nibabel, nilearn, funcsigs, pydot, more-itertools, zipp, contextlib2, scandir, pathlib2, importlib-metadata, wcwidth, atomicwrites, pluggy, py, attrs, pytest, lxml, isodate, rdflib, prov, apipkg, execnet, pytest-forked, pytest-xdist, mock, simplejson, pydotplus, nipype, patsy, psutil, pyyaml, requests, scikit-learn, PyBASC, pathlib
Found existing installation: python-dateutil 2.8.1
Uninstalling python-dateutil-2.8.1:
Successfully uninstalled python-dateutil-2.8.1
Found existing installation: PyYAML 3.12
DEPRECATION: Uninstalling a distutils installed project (pyyaml) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling PyYAML-3.12:
Successfully uninstalled PyYAML-3.12
Found existing installation: requests 2.22.0
Uninstalling requests-2.22.0:
Successfully uninstalled requests-2.22.0
Successfully installed INDI-Tools-0.0.6 PyBASC-0.4.5 apipkg-1.5 atomicwrites-1.3.0 attrs-19.3.0 boto3-1.7.37 botocore-1.10.84 click-6.7 configparser-3.7.4 contextlib2-0.6.0.post1 docutils-0.15.2 execnet-1.7.1 funcsigs-1.0.2 future-0.16.0 importlib-metadata-0.23 isodate-0.6.0 jmespath-0.9.4 lockfile-0.12.2 lxml-4.4.1 mock-3.0.5 more-itertools-5.0.0 nibabel-2.3.0 nilearn-0.4.1 nipype-1.1.2 pathlib-1.0.1 pathlib2-2.3.5 patsy-0.5.0 pluggy-0.13.0 prov-1.5.0 psutil-5.4.6 py-1.8.0 pydot-1.4.1 pydotplus-2.0.2 pytest-4.6.6 pytest-forked-1.1.3 pytest-xdist-1.30.0 python-dateutil-2.7.3 pyyaml-4.2b1 rdflib-4.2.2 requests-2.21.0 s3transfer-0.1.13 scandir-1.10.0 scikit-learn-0.19.1 simplejson-3.15.0 wcwidth-0.1.7 zipp-0.6.0
You are using pip version 9.0.1, however version 19.3.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Removing intermediate container f677ab9cb1b6
---> e8d936ffc815
Step 32/46 : RUN pip install xvfbwrapper
---> Running in 4e7f0fa16bfc
Collecting xvfbwrapper
Downloading https://files.pythonhosted.org/packages/57/b6/4920eabda9b49630dea58745e79f9919aba6408d460afe758bf6e9b21a04/xvfbwrapper-0.2.9.tar.gz
Building wheels for collected packages: xvfbwrapper
Running setup.py bdist_wheel for xvfbwrapper: started
Running setup.py bdist_wheel for xvfbwrapper: finished with status 'done'
Stored in directory: /root/.cache/pip/wheels/10/f2/61/cacfaf84b352c223761ea8d19616e3b5ac5c27364da72863f0
Successfully built xvfbwrapper
Installing collected packages: xvfbwrapper
Successfully installed xvfbwrapper-0.2.9
You are using pip version 9.0.1, however version 19.3.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Removing intermediate container 4e7f0fa16bfc
---> 0e6e74e75fe7
Step 33/46 : RUN pip install git+https://github.com/ChildMindInstitute/PyPEER.git
---> Running in f83118d78d19
Collecting git+https://github.com/ChildMindInstitute/PyPEER.git
Cloning https://github.com/ChildMindInstitute/PyPEER.git to /tmp/pip-e0C1MI-build
Installing collected packages: PyPEER
Running setup.py install for PyPEER: started
Running setup.py install for PyPEER: finished with status 'done'
Successfully installed PyPEER-1.0
You are using pip version 9.0.1, however version 19.3.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Removing intermediate container f83118d78d19
---> cff89e892230
Step 34/46 : ADD dev/docker_data/cpac_templates.tar.gz /
---> 021978a77821
Step 35/46 : RUN curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.deb.sh | bash
---> Running in cff07544379a
Detected operating system as Ubuntu/xenial.
Checking for curl...
Detected curl...
Checking for gpg...
Detected gpg...
Running apt-get update... done.
Installing apt-transport-https... done.
Installing /etc/apt/sources.list.d/github_git-lfs.list...done.
Importing packagecloud gpg key... done.
Running apt-get update... done.
The repository is setup! You can now install packages.
Removing intermediate container cff07544379a
---> 8706af892c58
Step 36/46 : RUN apt-get install git-lfs
---> Running in d94b2eb8a9a9
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
git-lfs
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 6081 kB of archives.
After this operation, 14.8 MB of additional disk space will be used.
Get:1 https://packagecloud.io/github/git-lfs/ubuntu xenial/main amd64 git-lfs amd64 2.9.0 [6081 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 6081 kB in 0s (7878 kB/s)
Selecting previously unselected package git-lfs.
(Reading database ... 40844 files and directories currently installed.)
Preparing to unpack .../git-lfs_2.9.0_amd64.deb ...
Unpacking git-lfs (2.9.0) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up git-lfs (2.9.0) ...
Git LFS initialized.
Removing intermediate container d94b2eb8a9a9
---> eb777be1dc64
Step 37/46 : RUN git lfs install
---> Running in 3dd51cae1fd5
Git LFS initialized.
Removing intermediate container 3dd51cae1fd5
---> f724c47c624d
Step 38/46 : RUN mkdir -p /ndmg_atlases/label && GIT_LFS_SKIP_SMUDGE=1 git clone https://github.com/neurodata/neuroparc.git /tmp/neuroparc && cd /tmp/neuroparc && git lfs pull -I "atlases/label/Human/*" && cp -r /tmp/neuroparc/atlases/label/Human /ndmg_atlases/label && cd -
---> Running in e0395f876139
Cloning into '/tmp/neuroparc'...
Pointer file error: Unable to parse pointer at: "atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all-regions-1x1x1.json"
Pointer file error: Unable to parse pointer at: "atlases/label/Human/HarvardOxfordsub-maxprob-thr25_space-MNI152NLin6_label_all-regions-2x2x2.json"
Checking out files: 100% (242/242), done.
/
Removing intermediate container e0395f876139
---> daf6fa9f7774
Step 39/46 : COPY dev/docker_data/default_pipeline.yml /cpac_resources/default_pipeline.yml
---> b81ccba9081b
Step 40/46 : COPY dev/circleci_data/pipe-test_ci.yml /cpac_resources/pipe-test_ci.yml
---> 25deb3c1ae88
Step 41/46 : COPY . /code
---> 3802fc54e38c
Step 42/46 : RUN pip install -e /code
---> Running in 3eebbf6f1b81
Obtaining file:///code
Requirement already satisfied: boto3==1.7.37 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: click==6.7 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: configparser==3.7.4 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: cython==0.26 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: future==0.16.0 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: INDI-Tools==0.0.6 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: lockfile==0.12.2 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: matplotlib==2.0.2 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: networkx==1.11 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: nibabel==2.3.0 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: nilearn==0.4.1 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: nipype==1.1.2 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: nose==1.3.7 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: numpy==1.13.0 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: pandas==0.23.4 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: patsy==0.5.0 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: prov==1.5.0 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: psutil==5.4.6 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Collecting pygraphviz==1.3.1 (from CPAC==1.5.0)
Downloading https://files.pythonhosted.org/packages/98/bb/a32e33f7665b921c926209305dde66fe41003a4ad934b10efb7c1211a419/pygraphviz-1.3.1.tar.gz (103kB)
Requirement already satisfied: python-dateutil==2.7.3 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: pyyaml==4.2b1 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: scikit-learn==0.19.1 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: scipy==1.2.1 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: simplejson==3.15.0 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: traits==4.6.0 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: PyBASC==0.4.5 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: pathlib==1.0.1 in /usr/local/miniconda/lib/python2.7/site-packages (from CPAC==1.5.0)
Requirement already satisfied: botocore<1.11.0,>=1.10.37 in /usr/local/miniconda/lib/python2.7/site-packages (from boto3==1.7.37->CPAC==1.5.0)
Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /usr/local/miniconda/lib/python2.7/site-packages (from boto3==1.7.37->CPAC==1.5.0)
Requirement already satisfied: s3transfer<0.2.0,>=0.1.10 in /usr/local/miniconda/lib/python2.7/site-packages (from boto3==1.7.37->CPAC==1.5.0)
Requirement already satisfied: six>=1.10 in /usr/local/miniconda/lib/python2.7/site-packages (from matplotlib==2.0.2->CPAC==1.5.0)
Requirement already satisfied: functools32 in /usr/local/miniconda/lib/python2.7/site-packages (from matplotlib==2.0.2->CPAC==1.5.0)
Requirement already satisfied: subprocess32 in /usr/local/miniconda/lib/python2.7/site-packages (from matplotlib==2.0.2->CPAC==1.5.0)
Requirement already satisfied: pytz in /usr/local/miniconda/lib/python2.7/site-packages (from matplotlib==2.0.2->CPAC==1.5.0)
Requirement already satisfied: cycler>=0.10 in /usr/local/miniconda/lib/python2.7/site-packages (from matplotlib==2.0.2->CPAC==1.5.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 in /usr/local/miniconda/lib/python2.7/site-packages (from matplotlib==2.0.2->CPAC==1.5.0)
Requirement already satisfied: decorator>=3.4.0 in /usr/local/miniconda/lib/python2.7/site-packages (from networkx==1.11->CPAC==1.5.0)
Requirement already satisfied: packaging in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: funcsigs in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: pydot>=1.2.3 in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: pytest>=3.0 in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: mock in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: pytest-xdist in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: futures; python_version == "2.7" in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: pydotplus in /usr/local/miniconda/lib/python2.7/site-packages (from nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: lxml in /usr/local/miniconda/lib/python2.7/site-packages (from prov==1.5.0->CPAC==1.5.0)
Requirement already satisfied: rdflib>=4.2.1 in /usr/local/miniconda/lib/python2.7/site-packages (from prov==1.5.0->CPAC==1.5.0)
Requirement already satisfied: docutils>=0.10 in /usr/local/miniconda/lib/python2.7/site-packages (from botocore<1.11.0,>=1.10.37->boto3==1.7.37->CPAC==1.5.0)
Requirement already satisfied: importlib-metadata>=0.12; python_version < "3.8" in /usr/local/miniconda/lib/python2.7/site-packages (from pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: wcwidth in /usr/local/miniconda/lib/python2.7/site-packages (from pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: atomicwrites>=1.0 in /usr/local/miniconda/lib/python2.7/site-packages (from pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: pluggy<1.0,>=0.12 in /usr/local/miniconda/lib/python2.7/site-packages (from pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: pathlib2>=2.2.0; python_version < "3.6" in /usr/local/miniconda/lib/python2.7/site-packages (from pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: py>=1.5.0 in /usr/local/miniconda/lib/python2.7/site-packages (from pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: attrs>=17.4.0 in /usr/local/miniconda/lib/python2.7/site-packages (from pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: more-itertools<6.0.0,>=4.0.0; python_version <= "2.7" in /usr/local/miniconda/lib/python2.7/site-packages (from pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: execnet>=1.1 in /usr/local/miniconda/lib/python2.7/site-packages (from pytest-xdist->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: pytest-forked in /usr/local/miniconda/lib/python2.7/site-packages (from pytest-xdist->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: isodate in /usr/local/miniconda/lib/python2.7/site-packages (from rdflib>=4.2.1->prov==1.5.0->CPAC==1.5.0)
Requirement already satisfied: zipp>=0.5 in /usr/local/miniconda/lib/python2.7/site-packages (from importlib-metadata>=0.12; python_version < "3.8"->pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: contextlib2; python_version < "3" in /usr/local/miniconda/lib/python2.7/site-packages (from importlib-metadata>=0.12; python_version < "3.8"->pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: scandir; python_version < "3.5" in /usr/local/miniconda/lib/python2.7/site-packages (from pathlib2>=2.2.0; python_version < "3.6"->pytest>=3.0->nipype==1.1.2->CPAC==1.5.0)
Requirement already satisfied: apipkg>=1.4 in /usr/local/miniconda/lib/python2.7/site-packages (from execnet>=1.1->pytest-xdist->nipype==1.1.2->CPAC==1.5.0)
Building wheels for collected packages: pygraphviz
Running setup.py bdist_wheel for pygraphviz: started
Running setup.py bdist_wheel for pygraphviz: finished with status 'done'
Stored in directory: /root/.cache/pip/wheels/89/f8/bd/38caed8368dc773e4af8e8fb853a56edbfff8e1893dd49eff6
Successfully built pygraphviz
Installing collected packages: pygraphviz, CPAC
Running setup.py develop for CPAC
Successfully installed CPAC pygraphviz-1.3.1
You are using pip version 9.0.1, however version 19.3.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Removing intermediate container 3eebbf6f1b81
---> b24264f964d6
Step 43/46 : COPY dev/docker_data /code/docker_data
---> e188bcce90ca
Step 44/46 : RUN mv /code/docker_data/* /code && rm -Rf /code/docker_data && chmod +x /code/run.py
---> Running in f27252ddd339
Removing intermediate container f27252ddd339
---> 0256e8bd73f2
Step 45/46 : ENTRYPOINT ["/code/run.py"]
---> Running in dc04ceb510fa
Removing intermediate container dc04ceb510fa
---> 859b39c12948
Step 46/46 : RUN apt-get clean && apt-get autoremove -y && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
---> Running in 899fdc515034
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Removing intermediate container 899fdc515034
---> c470a7d262de
Successfully built c470a7d262de
Successfully tagged c-pac:latest
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