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sp00nman/sort_bed.sh

Created October 23, 2015 12:09
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sort bed file by chromosome; then by position
Raw
sort_bed.sh
#!/bin/bash
BED_FILE=$1
sort -k1,1 -k2,2n $BED_FILE >${BED_FILE}_sorted.bed
## format
#chr1 12
#chr2 56
#chr10 13
#chr11 9 ...
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