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sp00nman/reformat_bed_chr

Last active July 29, 2023 08:42
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Reformat bed file (add chr to chromosome)
Raw
reformat_bed_chr
#Example_input.bed
#ENST00000456328 1 + 11868 14409 11868 11868 3 11868,12612,13220, 12227,12721,14409, DDX11L1
awk '{chrom=$2; gsub(chrom,"chr"chrom,$2)}{print $0}' Example_input.bed >Example_output.bed
#Example_output.bed
#ENST00000456328 chr1 + 11868 14409 11868 11868 3 11868,12612,13220, 12227,12721,14409, DDX11L1
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