Introduction to linux command line/ipython/git/R for bioinformatics: https://github.com/biom262/biom262-2016 https://github.com/ricket-sjtu/bi028 https://github.com/YeoLab/single-cell-bioinformatics/ https://github.com/YeoLab/single-cell-bioinformatics/tree/master/notebooks https://github.com/ltminty/Bioinformatics-and-R/blob/master/Rbioinformatics.ipynb RNA-seq: https://github.com/Caroldm/RNA-Seq-Tutorial---Jupyter-notebook/blob/master/RNAseq%20tutorial.ipynb