squirrelo

Keybase proof

I hereby claim:

• I am squirrelo on github.
• I am squirrelo (https://keybase.io/squirrelo) on keybase.
• I have a public key whose fingerprint is 7E05 CAC7 FFF0 E4C1 9CAC 5611 CB2E 4A92 49B4 62F9

To claim this, I am signing this object:

squirrelo

import psycopg2
from passlib.hash import bcrypt
from random import choice
from sys import argv

def _new_kit_id():
    seen = set()
    alpha = "abcdefghijklmnopqrstuvwxyz"
    alpha += alpha.upper()
    while True:

squirrelo

#!/usr/bin/env python

from datetime import datetime
import re
import binascii
import os
from copy import deepcopy

from amgut.lib.data_access.sql_connection import SQLConnectionHandler
from amgut.connections import ag_data

squirrelo

#!/usr/bin/env python

import click
from pandas.io.parsers import read_table
from pandas import DataFrame
from skbio.stats.distance import DistanceMatrix, permanova, anosim
from statsmodels.sandbox.stats.multicomp import multipletests


DIST_TESTS = {

squirrelo

#!/usr/bin/env python
from os.path import join, basename, splitext
from subprocess import Popen, PIPE
from shlex import split as comm_split
import click
from qiime_default_reference import get_reference_taxonomy


@click.command()
@click.option('--seqs_fp', '-i', type=click.Path(

squirrelo

# with help from http://stackoverflow.com/q/17171878
import ast
from argparse import ArgumentParser
from os.path import basename, splitext

parser = ArgumentParser(description='Creates test code skeleton for a given file')
parser.add_argument('-i', type=str,
                    help='File to generate test framework for')
parser.add_argument('-o', type=str,
                    help='File to write test framework to.')

squirrelo

from argparse import ArgumentParser

#requires numpy, moviepy, and PIL libraries
from moviepy.editor import VideoFileClip
from numpy import zeros, array, uint8
from PIL import Image

def frange(x, y, inc):
  while x < y:
    yield x