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February 15, 2017 00:00
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021417-abacus-stdout.txt
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steven@emu:~/bioinfo/021417$ java -Xmx16g -jar /home/shared/abacus/abacus.jar -p \ | |
> Abacus-01.param | |
*********************************** | |
Abacus | |
Version: 2.5 | |
*********************************** | |
Developed and written by: Damian Fermin and Alexey Nesvizhskii | |
Copyright 2010 Damian Fermin | |
Licensed under the Apache License, Version 2.0 (the "License"); | |
you may not use this file except in compliance with the License. | |
You may obtain a copy of the License at | |
http://www.apache.org/licenses/LICENSE-2.0 | |
Unless required by applicable law or agreed to in writing, software | |
distributed under the License is distributed on an "AS IS" BASIS, | |
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
See the License for the specific language governing permissions and | |
limitations under the License. | |
Parameters for this execution: | |
Source directory: '/home/steven/bioinfo/021417' | |
DB name: 'Cg_Giga_cont_AA.fa' | |
Output file: '/home/steven/bioinfo/021417/ABACUS_output.tsv' | |
Combined file P: 0.9 | |
iniProb threshold: 0.5 | |
maxIniProb: 0.99 | |
Keep DB files: false | |
Recalc Pep Wts: false | |
Output format: Default | |
Retrieving protein lengths from | |
'Cg_Giga_cont_AA.fa' | |
Loading protXML files | |
Parsing protXML [ 1 of 44 ]: interact-20161205_Sample_51A.prot.xml | |
Parsing protXML [ 2 of 44 ]: interact-20161205_Sample_36.prot.xml | |
Parsing protXML [ 3 of 44 ]: interact-20161205_Sample_19A.prot.xml | |
Parsing protXML [ 4 of 44 ]: interact-20161205_Sample_28.prot.xml | |
Parsing protXML [ 5 of 44 ]: interact-20161205_Sample_40A.prot.xml | |
Parsing protXML [ 6 of 44 ]: interact-20161205_Sample_24.prot.xml | |
Parsing protXML [ 7 of 44 ]: interact-20161205_Sample_40.prot.xml | |
Parsing protXML [ 8 of 44 ]: interact-20161205_Sample_36A.prot.xml | |
Parsing protXML [ 9 of 44 ]: interact-20161205_Sample_1A.prot.xml | |
Parsing protXML [ 10 of 44 ]: interact-20161205_Sample_19.prot.xml | |
Parsing protXML [ 11 of 44 ]: interact-20161205_Sample_27.prot.xml | |
Parsing protXML [ 12 of 44 ]: interact-20161205_Sample_48A.prot.xml | |
Parsing protXML [ 13 of 44 ]: interact-20161205_Sample_16.prot.xml | |
Parsing protXML [ 14 of 44 ]: interact-20161205_Sample_24A.prot.xml | |
Parsing protXML [ 15 of 44 ]: interact-20161205_Sample_3.prot.xml | |
Parsing protXML [ 16 of 44 ]: interact-20161205_Sample_51.prot.xml | |
Parsing protXML [ 17 of 44 ]: interact-20161205_Sample_56.prot.xml | |
Parsing protXML [ 18 of 44 ]: interact-20161205_Sample_35A.prot.xml | |
Parsing protXML [ 19 of 44 ]: interact-20161205_Sample_35.prot.xml | |
Parsing protXML [ 20 of 44 ]: interact-20161205_Sample_43.prot.xml | |
Parsing protXML [ 21 of 44 ]: interact-20161205_Sample_8A.prot.xml | |
Parsing protXML [ 22 of 44 ]: interact-20161205_sample_1.prot.xml | |
Parsing protXML [ 23 of 44 ]: interact-20161205_Sample_11A.prot.xml | |
Parsing protXML [ 24 of 44 ]: interact-20161205_Sample_8.prot.xml | |
Parsing protXML [ 25 of 44 ]: interact-20161205_Sample_43A.prot.xml | |
Parsing protXML [ 26 of 44 ]: interact-20161205_Sample_32.prot.xml | |
Parsing protXML [ 27 of 44 ]: interact-20161205_Sample_3A.prot.xml | |
Parsing protXML [ 28 of 44 ]: interact-20161205_Sample_27A.prot.xml | |
Parsing protXML [ 29 of 44 ]: interact-20161205_Sample_56A.prot.xml | |
Parsing protXML [ 30 of 44 ]: interact-20161205_Sample_12.prot.xml | |
Parsing protXML [ 31 of 44 ]: interact-20161205_Sample_4.prot.xml | |
Parsing protXML [ 32 of 44 ]: interact-20161205_Sample_11.prot.xml | |
Parsing protXML [ 33 of 44 ]: interact-20161205_Sample_44.prot.xml | |
Parsing protXML [ 34 of 44 ]: interact-COMBINED.prot.xml | |
Parsing protXML [ 35 of 44 ]: interact-20161205_Sample_52.prot.xml | |
Parsing protXML [ 36 of 44 ]: interact-20161205_Sample_20.prot.xml | |
Parsing protXML [ 37 of 44 ]: interact-20161205_Sample_16A.prot.xml | |
Parsing protXML [ 38 of 44 ]: interact-20161205_Sample_28A.prot.xml | |
Parsing protXML [ 39 of 44 ]: interact-20161205_Sample_32A.prot.xml | |
Parsing protXML [ 40 of 44 ]: interact-20161205_Sample_4A.prot.xml | |
Parsing protXML [ 41 of 44 ]: interact-20161205_Sample_12A.prot.xml | |
Parsing protXML [ 42 of 44 ]: interact-20161205_Sample_48.prot.xml | |
Parsing protXML [ 43 of 44 ]: interact-20161205_Sample_44A.prot.xml | |
Parsing protXML [ 44 of 44 ]: interact-20161205_Sample_52A.prot.xml | |
Loading pepXML files | |
Parsing pepXML [ 1 of 88 ]: interact-20161205_Sample_8A.pep.xml | |
Parsing pepXML [ 2 of 88 ]: 20161205_Sample_56.pep.xml | |
Parsing pepXML [ 3 of 88 ]: 20161205_Sample_20.pep.xml | |
Parsing pepXML [ 4 of 88 ]: interact-20161205_Sample_1A.pep.xml | |
Parsing pepXML [ 5 of 88 ]: interact-20161205_Sample_4A.pep.xml | |
Parsing pepXML [ 6 of 88 ]: 20161205_Sample_52.pep.xml | |
Parsing pepXML [ 7 of 88 ]: interact-20161205_Sample_40.pep.xml | |
Parsing pepXML [ 8 of 88 ]: 20161205_sample_1.pep.xml | |
Parsing pepXML [ 9 of 88 ]: 20161205_Sample_27A.pep.xml | |
Parsing pepXML [ 10 of 88 ]: 20161205_Sample_27.pep.xml | |
Parsing pepXML [ 11 of 88 ]: interact-20161205_Sample_20A.pep.xml | |
Parsing pepXML [ 12 of 88 ]: 20161205_Sample_4A.pep.xml | |
Parsing pepXML [ 13 of 88 ]: 20161205_Sample_43A.pep.xml | |
Parsing pepXML [ 14 of 88 ]: interact-20161205_Sample_48.pep.xml | |
Parsing pepXML [ 15 of 88 ]: interact-20161205_Sample_35.pep.xml | |
Parsing pepXML [ 16 of 88 ]: interact-20161205_Sample_43A.pep.xml | |
Parsing pepXML [ 17 of 88 ]: 20161205_Sample_1A.pep.xml | |
Parsing pepXML [ 18 of 88 ]: interact-20161205_Sample_12.pep.xml | |
Parsing pepXML [ 19 of 88 ]: 20161205_Sample_8.pep.xml | |
Parsing pepXML [ 20 of 88 ]: 20161205_Sample_48A.pep.xml | |
Parsing pepXML [ 21 of 88 ]: interact-20161205_Sample_52.pep.xml | |
Parsing pepXML [ 22 of 88 ]: 20161205_Sample_32.pep.xml | |
Parsing pepXML [ 23 of 88 ]: 20161205_Sample_19.pep.xml | |
Parsing pepXML [ 24 of 88 ]: 20161205_Sample_40.pep.xml | |
Parsing pepXML [ 25 of 88 ]: interact-20161205_Sample_24A.pep.xml | |
Parsing pepXML [ 26 of 88 ]: interact-20161205_Sample_51.pep.xml | |
Parsing pepXML [ 27 of 88 ]: 20161205_Sample_20A.pep.xml | |
Parsing pepXML [ 28 of 88 ]: 20161205_Sample_43.pep.xml | |
Parsing pepXML [ 29 of 88 ]: 20161205_Sample_3A.pep.xml | |
Parsing pepXML [ 30 of 88 ]: 20161205_Sample_8A.pep.xml | |
Parsing pepXML [ 31 of 88 ]: interact-20161205_Sample_32A.pep.xml | |
Parsing pepXML [ 32 of 88 ]: interact-20161205_Sample_51A.pep.xml | |
Parsing pepXML [ 33 of 88 ]: interact-20161205_Sample_3.pep.xml | |
Parsing pepXML [ 34 of 88 ]: interact-20161205_Sample_35A.pep.xml | |
Parsing pepXML [ 35 of 88 ]: interact-20161205_Sample_56A.pep.xml | |
Parsing pepXML [ 36 of 88 ]: interact-20161205_Sample_11A.pep.xml | |
Parsing pepXML [ 37 of 88 ]: 20161205_Sample_51A.pep.xml | |
Parsing pepXML [ 38 of 88 ]: 20161205_Sample_48.pep.xml | |
Parsing pepXML [ 39 of 88 ]: 20161205_Sample_11A.pep.xml | |
Parsing pepXML [ 40 of 88 ]: 20161205_Sample_32A.pep.xml | |
Parsing pepXML [ 41 of 88 ]: interact-20161205_Sample_44A.pep.xml | |
Parsing pepXML [ 42 of 88 ]: 20161205_Sample_11.pep.xml | |
Parsing pepXML [ 43 of 88 ]: 20161205_Sample_24.pep.xml | |
Parsing pepXML [ 44 of 88 ]: interact-20161205_Sample_48A.pep.xml | |
Parsing pepXML [ 45 of 88 ]: 20161205_Sample_44A.pep.xml | |
Parsing pepXML [ 46 of 88 ]: interact-20161205_Sample_32.pep.xml | |
Parsing pepXML [ 47 of 88 ]: interact-20161205_Sample_28.pep.xml | |
Parsing pepXML [ 48 of 88 ]: interact-20161205_Sample_4.pep.xml | |
Parsing pepXML [ 49 of 88 ]: 20161205_Sample_3.pep.xml | |
Parsing pepXML [ 50 of 88 ]: interact-20161205_Sample_16A.pep.xml | |
Parsing pepXML [ 51 of 88 ]: 20161205_Sample_28.pep.xml | |
Parsing pepXML [ 52 of 88 ]: interact-20161205_Sample_43.pep.xml | |
Parsing pepXML [ 53 of 88 ]: 20161205_Sample_36.pep.xml | |
Parsing pepXML [ 54 of 88 ]: interact-20161205_Sample_27.pep.xml | |
Parsing pepXML [ 55 of 88 ]: interact-20161205_Sample_27A.pep.xml | |
Parsing pepXML [ 56 of 88 ]: interact-20161205_Sample_19A.pep.xml | |
Parsing pepXML [ 57 of 88 ]: interact-20161205_Sample_52A.pep.xml | |
Parsing pepXML [ 58 of 88 ]: interact-20161205_Sample_40A.pep.xml | |
Parsing pepXML [ 59 of 88 ]: interact-20161205_Sample_16.pep.xml | |
Parsing pepXML [ 60 of 88 ]: interact-20161205_Sample_24.pep.xml | |
Parsing pepXML [ 61 of 88 ]: interact-20161205_Sample_11.pep.xml | |
Parsing pepXML [ 62 of 88 ]: interact-20161205_Sample_56.pep.xml | |
Parsing pepXML [ 63 of 88 ]: 20161205_Sample_28A.pep.xml | |
Parsing pepXML [ 64 of 88 ]: 20161205_Sample_24A.pep.xml | |
Parsing pepXML [ 65 of 88 ]: 20161205_Sample_19A.pep.xml | |
Parsing pepXML [ 66 of 88 ]: interact-20161205_sample_1.pep.xml | |
Parsing pepXML [ 67 of 88 ]: 20161205_Sample_51.pep.xml | |
Parsing pepXML [ 68 of 88 ]: interact-20161205_Sample_20.pep.xml | |
Parsing pepXML [ 69 of 88 ]: 20161205_Sample_44.pep.xml | |
Parsing pepXML [ 70 of 88 ]: 20161205_Sample_36A.pep.xml | |
Parsing pepXML [ 71 of 88 ]: interact-20161205_Sample_44.pep.xml | |
Parsing pepXML [ 72 of 88 ]: 20161205_Sample_12A.pep.xml | |
Parsing pepXML [ 73 of 88 ]: interact-20161205_Sample_12A.pep.xml | |
Parsing pepXML [ 74 of 88 ]: interact-20161205_Sample_3A.pep.xml | |
Parsing pepXML [ 75 of 88 ]: interact-20161205_Sample_28A.pep.xml | |
Parsing pepXML [ 76 of 88 ]: 20161205_Sample_52A.pep.xml | |
Parsing pepXML [ 77 of 88 ]: 20161205_Sample_16A.pep.xml | |
Parsing pepXML [ 78 of 88 ]: 20161205_Sample_4.pep.xml | |
Parsing pepXML [ 79 of 88 ]: 20161205_Sample_35A.pep.xml | |
Parsing pepXML [ 80 of 88 ]: 20161205_Sample_12.pep.xml | |
Parsing pepXML [ 81 of 88 ]: 20161205_Sample_56A.pep.xml | |
Parsing pepXML [ 82 of 88 ]: interact-20161205_Sample_36A.pep.xml | |
Parsing pepXML [ 83 of 88 ]: interact-20161205_Sample_19.pep.xml | |
Parsing pepXML [ 84 of 88 ]: 20161205_Sample_16.pep.xml | |
Parsing pepXML [ 85 of 88 ]: 20161205_Sample_40A.pep.xml | |
Parsing pepXML [ 86 of 88 ]: interact-20161205_Sample_36.pep.xml | |
Parsing pepXML [ 87 of 88 ]: interact-20161205_Sample_8.pep.xml | |
Parsing pepXML [ 88 of 88 ]: 20161205_Sample_35.pep.xml | |
Creating srcFileTags table | |
Creating combined table from 'interact-COMBINED.prot.xml' | |
Curating interact-COMBINED.prot.xml | |
Recalculating peptide weights for combined | |
Creating protXML table | |
Populating protXML table... [ / 2643677 Working... ] | |
Indexing protXML table (This can take a while...) | |
Indexing of protXML completed | |
Mapping peptides to proteins (combined) | |
Mapping peptides to proteins (combined) [ - 117298 Working... ] | |
Mapping peptides to proteins (X20161205_SAMPLE_1) | |
Mapping peptides to proteins (X20161205_SAMPLE_11) | |
Mapping peptides to proteins (X20161205_SAMPLE_11A) | |
Mapping peptides to proteins (X20161205_SAMPLE_12) | |
Mapping peptides to proteins (X20161205_SAMPLE_12A) | |
Mapping peptides to proteins (X20161205_SAMPLE_16) | |
Mapping peptides to proteins (X20161205_SAMPLE_16A) | |
Mapping peptides to proteins (X20161205_SAMPLE_19) | |
Mapping peptides to proteins (X20161205_SAMPLE_19A) | |
Mapping peptides to proteins (X20161205_SAMPLE_1A) | |
Mapping peptides to proteins (X20161205_SAMPLE_20) | |
Mapping peptides to proteins (X20161205_SAMPLE_24) | |
Mapping peptides to proteins (X20161205_SAMPLE_24A) | |
Mapping peptides to proteins (X20161205_SAMPLE_27) | |
Mapping peptides to proteins (X20161205_SAMPLE_27A) | |
Mapping peptides to proteins (X20161205_SAMPLE_28) | |
Mapping peptides to proteins (X20161205_SAMPLE_28A) | |
Mapping peptides to proteins (X20161205_SAMPLE_3) | |
Mapping peptides to proteins (X20161205_SAMPLE_32) | |
Mapping peptides to proteins (X20161205_SAMPLE_32A) | |
Mapping peptides to proteins (X20161205_SAMPLE_35) | |
Mapping peptides to proteins (X20161205_SAMPLE_35A) | |
Mapping peptides to proteins (X20161205_SAMPLE_36) | |
Mapping peptides to proteins (X20161205_SAMPLE_36A) | |
Mapping peptides to proteins (X20161205_SAMPLE_3A) | |
Mapping peptides to proteins (X20161205_SAMPLE_4) | |
Mapping peptides to proteins (X20161205_SAMPLE_40) | |
Mapping peptides to proteins (X20161205_SAMPLE_40A) | |
Mapping peptides to proteins (X20161205_SAMPLE_43) | |
Mapping peptides to proteins (X20161205_SAMPLE_43A) | |
Mapping peptides to proteins (X20161205_SAMPLE_44) | |
Mapping peptides to proteins (X20161205_SAMPLE_44A) | |
Mapping peptides to proteins (X20161205_SAMPLE_48) | |
Mapping peptides to proteins (X20161205_SAMPLE_48A) | |
Mapping peptides to proteins (X20161205_SAMPLE_4A) | |
Mapping peptides to proteins (X20161205_SAMPLE_51) | |
Mapping peptides to proteins (X20161205_SAMPLE_51A) | |
Mapping peptides to proteins (X20161205_SAMPLE_52) | |
Mapping peptides to proteins (X20161205_SAMPLE_52A) | |
Mapping peptides to proteins (X20161205_SAMPLE_56) | |
Mapping peptides to proteins (X20161205_SAMPLE_56A) | |
Mapping peptides to proteins (X20161205_SAMPLE_8) | |
Mapping peptides to proteins (X20161205_SAMPLE_8A) | |
Creating protidSummary table | |
Collecting list of all proteins identified in interact-COMBINED.prot.xml | |
Counting protein frequencies across independent files | |
Getting protein frequencies [ \ 20435 Working... ] | |
Recording best ProteinProphet scores for each protein | |
Collecting protein probabilities [ \ 20435 Working... ] | |
Creating selection heuristics table (This could take a while)... [ - 10486 Working... ] | |
Picking representative protids | |
Loading protidSummary table... [ / 9077 Working... ] | |
Creating results | |
Appending protein lengths | |
Creating peptide usage table | |
Peptide usage index (X20161205_SAMPLE_1)... [ | 32888 Working... ] | |
Peptide usage index (X20161205_SAMPLE_11)... [ / 31713 Working... ] | |
Peptide usage index (X20161205_SAMPLE_11A)... [ \ 32223 Working... ] | |
Peptide usage index (X20161205_SAMPLE_12)... [ | 35724 Working... ] | |
Peptide usage index (X20161205_SAMPLE_12A)... [ - 35762 Working... ] | |
Peptide usage index (X20161205_SAMPLE_16)... [ / 31921 Working... ] | |
Peptide usage index (X20161205_SAMPLE_16A)... [ | 31256 Working... ] | |
Peptide usage index (X20161205_SAMPLE_19)... [ \ 33611 Working... ] | |
Peptide usage index (X20161205_SAMPLE_19A)... [ \ 35019 Working... ] | |
Peptide usage index (X20161205_SAMPLE_1A)... [ / 33993 Working... ] | |
Peptide usage index (X20161205_SAMPLE_20)... [ / 34069 Working... ] | |
Peptide usage index (X20161205_SAMPLE_24)... [ / 28665 Working... ] | |
Peptide usage index (X20161205_SAMPLE_24A)... [ - 29158 Working... ] | |
Peptide usage index (X20161205_SAMPLE_27)... [ \ 25807 Working... ] | |
Peptide usage index (X20161205_SAMPLE_27A)... [ | 25892 Working... ] | |
Peptide usage index (X20161205_SAMPLE_28)... [ / 32449 Working... ] | |
Peptide usage index (X20161205_SAMPLE_28A)... [ / 34189 Working... ] | |
Peptide usage index (X20161205_SAMPLE_3)... [ \ 32407 Working... ] | |
Peptide usage index (X20161205_SAMPLE_32)... [ | 32124 Working... ] | |
Peptide usage index (X20161205_SAMPLE_32A)... [ / 32369 Working... ] | |
Peptide usage index (X20161205_SAMPLE_35)... [ \ 10991 Working... ] | |
Peptide usage index (X20161205_SAMPLE_35A)... [ / 10653 Working... ] | |
Peptide usage index (X20161205_SAMPLE_36)... [ / 31221 Working... ] | |
Peptide usage index (X20161205_SAMPLE_36A)... [ \ 30931 Working... ] | |
Peptide usage index (X20161205_SAMPLE_3A)... [ \ 32611 Working... ] | |
Peptide usage index (X20161205_SAMPLE_4)... [ / 34429 Working... ] | |
Peptide usage index (X20161205_SAMPLE_40)... [ | 31096 Working... ] | |
Peptide usage index (X20161205_SAMPLE_40A)... [ | 30744 Working... ] | |
Peptide usage index (X20161205_SAMPLE_43)... [ \ 15299 Working... ] | |
Peptide usage index (X20161205_SAMPLE_43A)... [ | 15300 Working... ] | |
Peptide usage index (X20161205_SAMPLE_44)... [ \ 26003 Working... ] | |
Peptide usage index (X20161205_SAMPLE_44A)... [ | 26656 Working... ] | |
Peptide usage index (X20161205_SAMPLE_48)... [ - 33974 Working... ] | |
Peptide usage index (X20161205_SAMPLE_48A)... [ - 35738 Working... ] | |
Peptide usage index (X20161205_SAMPLE_4A)... [ \ 34643 Working... ] | |
Peptide usage index (X20161205_SAMPLE_51)... [ \ 27651 Working... ] | |
Peptide usage index (X20161205_SAMPLE_51A)... [ / 27553 Working... ] | |
Peptide usage index (X20161205_SAMPLE_52)... [ \ 29111 Working... ] | |
Peptide usage index (X20161205_SAMPLE_52A)... [ / 28541 Working... ] | |
Peptide usage index (X20161205_SAMPLE_56)... [ | 32604 Working... ] | |
Peptide usage index (X20161205_SAMPLE_56A)... [ | 32292 Working... ] | |
Peptide usage index (X20161205_SAMPLE_8)... [ | 33204 Working... ] | |
Peptide usage index (X20161205_SAMPLE_8A)... [ | 34304 Working... ] | |
Indexing pepUsage_ table | |
Updating adjusted spectral counts | |
Retrieving data from individual experiments | |
Adding data from X20161205_SAMPLE_1 | |
Adding data from X20161205_SAMPLE_11 | |
Adding data from X20161205_SAMPLE_11A | |
Adding data from X20161205_SAMPLE_12 | |
Adding data from X20161205_SAMPLE_12A | |
Adding data from X20161205_SAMPLE_16 | |
Adding data from X20161205_SAMPLE_16A | |
Adding data from X20161205_SAMPLE_19 | |
Adding data from X20161205_SAMPLE_19A | |
Adding data from X20161205_SAMPLE_1A | |
Adding data from X20161205_SAMPLE_20 | |
Adding data from X20161205_SAMPLE_24 | |
Adding data from X20161205_SAMPLE_24A | |
Adding data from X20161205_SAMPLE_27 | |
Adding data from X20161205_SAMPLE_27A | |
Adding data from X20161205_SAMPLE_28 | |
Adding data from X20161205_SAMPLE_28A | |
Adding data from X20161205_SAMPLE_3 | |
Adding data from X20161205_SAMPLE_32 | |
Adding data from X20161205_SAMPLE_32A | |
Adding data from X20161205_SAMPLE_35 | |
Adding data from X20161205_SAMPLE_35A | |
Adding data from X20161205_SAMPLE_36 | |
Adding data from X20161205_SAMPLE_36A | |
Adding data from X20161205_SAMPLE_3A | |
Adding data from X20161205_SAMPLE_4 | |
Adding data from X20161205_SAMPLE_40 | |
Adding data from X20161205_SAMPLE_40A | |
Adding data from X20161205_SAMPLE_43 | |
Adding data from X20161205_SAMPLE_43A | |
Adding data from X20161205_SAMPLE_44 | |
Adding data from X20161205_SAMPLE_44A | |
Adding data from X20161205_SAMPLE_48 | |
Adding data from X20161205_SAMPLE_48A | |
Adding data from X20161205_SAMPLE_4A | |
Adding data from X20161205_SAMPLE_51 | |
Adding data from X20161205_SAMPLE_51A | |
Adding data from X20161205_SAMPLE_52 | |
Adding data from X20161205_SAMPLE_52A | |
Adding data from X20161205_SAMPLE_56 | |
Adding data from X20161205_SAMPLE_56A | |
Adding data from X20161205_SAMPLE_8 | |
Adding data from X20161205_SAMPLE_8A | |
Creating NSAF values table (protein-centric) | |
NSAF_FACTOR = 10^5 = 100000.0 | |
java.sql.SQLSyntaxErrorException: user lacks privilege or object not found: NAN | |
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) | |
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) | |
at org.hsqldb.jdbc.JDBCStatement.fetchResult(Unknown Source) | |
at org.hsqldb.jdbc.JDBCStatement.executeUpdate(Unknown Source) | |
at abacus.hyperSQLObject.getNSAF_values_prot(hyperSQLObject.java:2961) | |
at abacus.abacus.main(abacus.java:221) | |
at mainFunction.mainFunction.main(mainFunction.java:49) | |
Caused by: org.hsqldb.HsqlException: user lacks privilege or object not found: NAN | |
at org.hsqldb.error.Error.error(Unknown Source) | |
at org.hsqldb.error.Error.error(Unknown Source) | |
at org.hsqldb.ExpressionColumn.checkColumnsResolved(Unknown Source) | |
at org.hsqldb.ParserDML.resolveUpdateExpressions(Unknown Source) | |
at org.hsqldb.ParserDML.compileUpdateStatement(Unknown Source) | |
at org.hsqldb.ParserCommand.compilePart(Unknown Source) | |
at org.hsqldb.ParserCommand.compileStatements(Unknown Source) | |
at org.hsqldb.Session.executeDirectStatement(Unknown Source) | |
at org.hsqldb.Session.execute(Unknown Source) | |
... 5 more |
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