Stephan Reichl sreichl
sreichl
/ .Snakemake Export Rule
Last active
September 12, 2024 09:25
Snakemake rule to ensure documentation and reproducibility by automated export of all used environments, configurations, and annotation files.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ... |
sreichl
/ .JupyterLab Setup
Last active
August 18, 2023 09:08
JupyterLab one-off setup for an HPC with SLURM workload manager.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ... |
sreichl
/ .Conda Export
Last active
May 5, 2025 10:30
Bash script to export all conda environments using three different configurations (all, --no-build, --no-build --from-history) as YAML files to the current directory.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| .. |