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stain/gist:6e2e805f2b19a4e88d15

Created May 19, 2015 13:41
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gistfile1.txt
{
"metadata": {
"name": "",
"signature": "sha256:e4bf083ad34af402f5d9d62b77788b16d22617dfda1948f4529c7882f31eb364"
},
"nbformat": 3,
"nbformat_minor": 0,
"worksheets": [
{
"cells": [
{
"cell_type": "code",
"collapsed": false,
"input": [
"import re\n",
"f = re.sub(r\" *\\| *\", \"\\t\", open(\"linksets.txt\").read())"
],
"language": "python",
"metadata": {},
"outputs": [],
"prompt_number": 35
},
{
"cell_type": "code",
"collapsed": false,
"input": [
"from SPARQLWrapper import SPARQLWrapper, JSON\n",
"sparql = SPARQLWrapper(\"http://localhost:3030/ims15/query\")\n",
"sparql.setReturnFormat(JSON)\n"
],
"language": "python",
"metadata": {},
"outputs": [],
"prompt_number": 41
},
{
"cell_type": "code",
"collapsed": false,
"input": [
"linksets = [l.strip().split(\"\\t\") for l in f.split(\"\\n\")][:-1]"
],
"language": "python",
"metadata": {},
"outputs": [],
"prompt_number": 47
},
{
"cell_type": "code",
"collapsed": false,
"input": [
"linksets[-1]"
],
"language": "python",
"metadata": {},
"outputs": [
{
"metadata": {},
"output_type": "pyout",
"prompt_number": 48,
"text": [
"['186',\n",
" 'S',\n",
" 'ConceptWiki',\n",
" 'http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_uniprot_org_uniprot-protein.ttl',\n",
" 'http://downloads.nbiceng.net/linksets/www_uniprot_org_uniprot-protein.ttl']"
]
}
],
"prompt_number": 48
},
{
"cell_type": "code",
"collapsed": false,
"input": [
"for l in linksets:\n",
" id,s,t,url,resource = l\n",
" resource = resource.replace(\"http://data.openphacts.org/1.5/ims/linksets/\", \"file:///staging/\")\n",
" sparql.setQuery(\"\"\"\n",
"PREFIX void: <http://rdfs.org/ns/void#>\n",
"PREFIX pav: <http://purl.org/pav/>\n",
"PREFIX foaf: <http://xmlns.com/foaf/0.1/>\n",
"PREFIX dct: <http://purl.org/dc/terms/>\n",
"PREFIX dcat: <http://www.w3.org/ns/dcat#>\n",
"prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n",
"prefix owl: <http://www.w3.org/2002/07/owl#>\n",
"prefix ops: <http://vocabularies.bridgedb.org/ops#>\n",
"prefix dul: <http://www.ontologydesignpatterns.org/ont/dul/DUL.owl#>\n",
"prefix foaf: <http://xmlns.com/foaf/0.1/>\n",
"\n",
" SELECT ?title ?createdBy ?createdOn\n",
" WHERE {\n",
" <%s> dct:title ?title ;\n",
" pav:createdBy ?createdBy ;\n",
" pav:createdOn ?createdOn .\n",
" }\n",
" \"\"\" % resource) ## FIXME: escape resource \n",
" print(\"\")\n",
" print(\"==== Linkset %s: %s -- %s ====\" % (id,s,t))\n",
" results = sparql.query().convert() \n",
" for result in results[\"results\"][\"bindings\"]:\n",
" createdBy = result[\"createdBy\"][\"value\"]\n",
" print(\"* Title: \", result[\"title\"][\"value\"])\n",
" print(\"* Created by: [%s %s]\" % (createdBy, createdBy))\n",
" print(\"* Created on: \", result[\"createdOn\"][\"value\"])\n",
" print(\"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/%s %s]\" % (id, id))\n",
" print(\"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/%s %s]\" % (s, s))\n",
" print(\"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/%s %s]\" % (t, t))\n",
" print(\"* Linkset: [%s %s]\" % (url, url))\n",
" #print(\"* Resource: \", resource)\n",
"\n"
],
"language": "python",
"metadata": {},
"outputs": [
{
"output_type": "stream",
"stream": "stdout",
"text": [
"\n",
"==== Linkset 2: S -- drugbankv4.target ====\n",
"* Title: DrugBank-Uniprot Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2015-04-01T17:10:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/2 2]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/drugbankv4.target drugbankv4.target]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/DrugBank/db-uniprot-ls.ttl http://data.openphacts.org/1.5/ims/linksets/DrugBank/db-uniprot-ls.ttl]\n",
"\n",
"==== Linkset 4: S -- L ====\n",
"* Title: NCBIGeneID-UniProt Linkset\n",
"* Created by: [https://orcid.org/0000-0003-0169-8159 https://orcid.org/0000-0003-0169-8159]\n",
"* Created on: 2013-11-20T00:00:00Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/4 4]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/L L]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/DisGeNET-linksets-20131220/disgenetLinksets-NCBIGeneID-UniProt-VoID-20131220.ttl http://data.openphacts.org/1.5/ims/linksets/DisGeNET-linksets-20131220/disgenetLinksets-NCBIGeneID-UniProt-VoID-20131220.ttl]\n",
"\n",
"==== Linkset 6: MSH -- NCIM ====\n",
"* Title: UMLS-MeSH Linkset\n",
"* Created by: [https://orcid.org/0000-0003-0169-8159 https://orcid.org/0000-0003-0169-8159]\n",
"* Created on: 2013-12-20T00:00:00Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/6 6]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/MSH MSH]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/NCIM NCIM]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/DisGeNET-linksets-20131220/disgenetLinksets-UMLS-MeSH-VoID-20131220.ttl http://data.openphacts.org/1.5/ims/linksets/DisGeNET-linksets-20131220/disgenetLinksets-UMLS-MeSH-VoID-20131220.ttl]\n",
"\n",
"==== Linkset 8: doid -- NCIM ====\n",
"* Title: UMLS-miriamDO Linkset\n",
"* Created by: [https://orcid.org/0000-0003-0169-8159 https://orcid.org/0000-0003-0169-8159]\n",
"* Created on: 2013-12-20T00:00:00Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/8 8]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/doid doid]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/NCIM NCIM]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/DisGeNET-linksets-20131220/disgenetLinksets-UMLS-miriamDO-VoID-20131220.ttl http://data.openphacts.org/1.5/ims/linksets/DisGeNET-linksets-20131220/disgenetLinksets-UMLS-miriamDO-VoID-20131220.ttl]\n",
"\n",
"==== Linkset 10: H -- Hac ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/10 10]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/H H]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/Hac Hac]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/HGNC/hgncLinksets.ttl http://data.openphacts.org/1.5/ims/linksets/HGNC/hgncLinksets.ttl]\n",
"\n",
"==== Linkset 12: Ca -- Ch ====\n",
"* Title: "
]
},
{
"output_type": "stream",
"stream": "stdout",
"text": [
" HMDB to CAS LinkSet\n",
"* Created by: [http://egonw.github.com/#me http://egonw.github.com/#me]\n",
"* Created on: 2013-06-24T09:50:39Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/12 12]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ca Ca]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ch Ch]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/HMDB/hmdb_ls_cas.ttl http://data.openphacts.org/1.5/ims/linksets/HMDB/hmdb_ls_cas.ttl]\n",
"\n",
"==== Linkset 14: Ck -- Ch ====\n",
"* Title: HMDB to KEGG LinkSet\n",
"* Created by: [http://egonw.github.com/#me http://egonw.github.com/#me]\n",
"* Created on: 2013-06-24T09:51:31Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/14 14]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ck Ck]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ch Ch]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/HMDB/hmdb_ls_kegg.ttl http://data.openphacts.org/1.5/ims/linksets/HMDB/hmdb_ls_kegg.ttl]\n",
"\n",
"==== Linkset 16: Cpc -- Ch ====\n",
"* Title: HMDB to PubChem Compounds LinkSet\n",
"* Created by: [http://egonw.github.com/#me http://egonw.github.com/#me]\n",
"* Created on: 2013-06-24T09:50:56Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/16 16]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Cpc Cpc]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ch Ch]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/HMDB/hmdb_ls_pubchem.ttl http://data.openphacts.org/1.5/ims/linksets/HMDB/hmdb_ls_pubchem.ttl]\n",
"\n",
"==== Linkset 18: Wi -- Ch ====\n",
"* Title: HMDB to DBPedia LinkSet\n",
"* Created by: [http://egonw.github.com/#me http://egonw.github.com/#me]\n",
"* Created on: 2013-06-24T09:51:13Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/18 18]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Wi Wi]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ch Ch]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/HMDB/hmdb_ls_wp.ttl http://data.openphacts.org/1.5/ims/linksets/HMDB/hmdb_ls_wp.ttl]\n",
"\n",
"==== Linkset 20: En -- S ====\n",
"* Title: Uniprot-Ensembl Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T17:00:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/20 20]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_ensembl.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_ensembl.ttl]\n",
"\n",
"==== Linkset 22: F -- S ====\n",
"* Title: Uniprot-FlyBase Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T17:30:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/22 22]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/F F]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_flybase.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_flybase.ttl]\n",
"\n",
"==== Linkset 24: L -- S ====\n",
"* Title: Uniprot-GeneID Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T13:00:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/24 24]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/L L]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_geneid.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_geneid.ttl]\n",
"\n",
"==== Linkset 26: Ip -- S ====\n",
"* Title: "
]
},
{
"output_type": "stream",
"stream": "stdout",
"text": [
" Uniprot-IPI Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T13:00:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/26 26]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ip Ip]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_ipi.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_ipi.ttl]\n",
"\n",
"==== Linkset 28: M -- S ====\n",
"* Title: Uniprot-MGI Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T12:30:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/28 28]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/M M]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_mgi.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_mgi.ttl]\n",
"\n",
"==== Linkset 30: Om -- S ====\n",
"* Title: Uniprot-OMIM Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T17:00:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/30 30]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Om Om]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_omim.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_omim.ttl]\n",
"\n",
"==== Linkset 32: Pd -- S ====\n",
"* Title: Uniprot-PDB Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T17:00:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/32 32]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Pd Pd]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_pdb.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_pdb.ttl]\n",
"\n",
"==== Linkset 34: Q -- S ====\n",
"* Title: Uniprot-RefSeq Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T13:00:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/34 34]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Q Q]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_refseq.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_refseq.ttl]\n",
"\n",
"==== Linkset 36: R -- S ====\n",
"* Title: Uniprot-RGD VoID Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T12:00:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/36 36]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/R R]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_rgd.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_rgd.ttl]\n",
"\n",
"==== Linkset 38: D -- S ====\n",
"* Title: Uniprot-SGD Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T17:00:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/38 38]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/D D]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_sgd.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_sgd.ttl]\n",
"\n",
"==== Linkset 40: U -- S ====\n",
"* Title: Uniprot-UniGene Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T17:00:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/40 40]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/U U]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_unigene.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_unigene.ttl]\n",
"\n",
"==== Linkset 42: W -- S ====\n",
"* Title: "
]
},
{
"output_type": "stream",
"stream": "stdout",
"text": [
" Uniprot-WormBase Linkset\n",
"* Created by: [mailto:a.loizou@vu.nl mailto:a.loizou@vu.nl]\n",
"* Created on: 2013-06-17T11:22:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/42 42]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/W W]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_wormbase.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_wormbase.ttl]\n",
"\n",
"==== Linkset 44: Z -- S ====\n",
"* Title: Uniprot-ZFIN Linkset\n",
"* Created by: [http://orcid.org/0000-0002-1303-2189 http://orcid.org/0000-0002-1303-2189]\n",
"* Created on: 2013-06-17T17:30:23Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/44 44]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Z Z]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_zfin.ttl http://data.openphacts.org/1.5/ims/linksets/uniprot/uniprot_zfin.ttl]\n",
"\n",
"==== Linkset 46: pw -- Wp ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/46 46]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/pw pw]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/Wp Wp]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/wikipathways/wp-po_Linkset.ttl http://data.openphacts.org/1.5/ims/linksets/wikipathways/wp-po_Linkset.ttl]\n",
"\n",
"==== Linkset 48: OPS-CRS -- OPS-CRS ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/48 48]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_CHARGE_CHILD_CHILD.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_CHARGE_CHILD_CHILD.ttl]\n",
"\n",
"==== Linkset 58: OPS-CRS -- OPS-CRS ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/58 58]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_CLOSE_PARENT_CHILD_TAUTOMER_UNSENSITIVE_PARENT.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_CLOSE_PARENT_CHILD_TAUTOMER_UNSENSITIVE_PARENT.ttl]\n",
"\n",
"==== Linkset 60: Ce -- OPS-CRS ====\n",
"* Title: OpenPhacts ChEBI exact match Linkset\n",
"* Created by: [http://www.chemspider.com/UserProfile.aspx?username=jonsteele http://www.chemspider.com/UserProfile.aspx?username=jonsteele]\n",
"* Created on: 2013-11-11T13:28:01Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/60 60]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ce Ce]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_CHEBI20131111.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_CHEBI20131111.ttl]\n",
"\n",
"==== Linkset 62: ChEMBLCompound -- OPS-CRS ====\n",
"* Title: OpenPhacts ChEMBL exact match Linkset\n",
"* Created by: [http://www.chemspider.com/UserProfile.aspx?username=jonsteele http://www.chemspider.com/UserProfile.aspx?username=jonsteele]\n",
"* Created on: 2013-11-11T13:28:01Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/62 62]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/ChEMBLCompound ChEMBLCompound]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_CHEMBL20131111.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_CHEMBL20131111.ttl]\n",
"\n",
"==== Linkset 64: Dr -- OPS-CRS ====\n",
"* Title: OpenPhacts DrugBank exact match Linkset\n",
"* Created by: [http://www.chemspider.com/UserProfile.aspx?username=jonsteele http://www.chemspider.com/UserProfile.aspx?username=jonsteele]\n",
"* Created on: 2013-11-11T13:28:01Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/64 64]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Dr Dr]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_DRUGBANK20131111.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_DRUGBANK20131111.ttl]\n",
"\n",
"==== Linkset 66: Ch -- OPS-CRS ====\n",
"* Title: OpenPhacts HMDB exact match Linkset\n",
"* Created by: [http://www.chemspider.com/UserProfile.aspx?username=jonsteele http://www.chemspider.com/UserProfile.aspx?username=jonsteele]\n",
"* Created on: 2013-11-11T13:28:01Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/66 66]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ch Ch]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_HMDB20131111.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_HMDB20131111.ttl]\n",
"\n",
"==== Linkset 68: MSH -- OPS-CRS ====\n",
"* Title: "
]
},
{
"output_type": "stream",
"stream": "stdout",
"text": [
" OpenPhacts MESH exact match Linkset\n",
"* Created by: [http://www.chemspider.com/UserProfile.aspx?username=jonsteele http://www.chemspider.com/UserProfile.aspx?username=jonsteele]\n",
"* Created on: 2013-11-11T13:28:01Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/68 68]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/MSH MSH]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_MESH20131111.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_MESH20131111.ttl]\n",
"\n",
"==== Linkset 70: Cs -- OPS-CRS ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/70 70]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Cs Cs]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_OPS_CHEMSPIDER..ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_EXACT_OPS_CHEMSPIDER..ttl]\n",
"\n",
"==== Linkset 72: OPS-CRS -- OPS-CRS ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/72 72]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_ISOTOPE_CHILD_CHILD.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_ISOTOPE_CHILD_CHILD.ttl]\n",
"\n",
"==== Linkset 76: OPS-CRS -- OPS-CRS ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/76 76]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_STEREO_CHILD_CHILD.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_STEREO_CHILD_CHILD.ttl]\n",
"\n",
"==== Linkset 78: OPS-CRS -- OPS-CRS ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/78 78]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_SUPER_CHILD_CHILD.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_SUPER_CHILD_CHILD.ttl]\n",
"\n",
"==== Linkset 80: OPS-CRS -- OPS-CRS ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/80 80]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/OPS-CRS OPS-CRS]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_TAUTOMER_CHILD_CHILD.ttl http://data.openphacts.org/1.5/ims/linksets/RSC/LINKSET_TAUTOMER_CHILD_CHILD.ttl]\n",
"\n",
"==== Linkset 82: Bg -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/82 82]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Bg Bg]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/BioGRID.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/BioGRID.ttl]\n",
"\n",
"==== Linkset 84: E -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/84 84]"
]
},
{
"output_type": "stream",
"stream": "stdout",
"text": [
"\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/E E]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/EC_NUMBER.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/EC_NUMBER.ttl]\n",
"\n",
"==== Linkset 86: Em -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/86 86]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Em Em]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/EMBL.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/EMBL.ttl]\n",
"\n",
"==== Linkset 88: lrg -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/88 88]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/lrg lrg]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/ENS_LRG_gene.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/ENS_LRG_gene.ttl]\n",
"\n",
"==== Linkset 90: L -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/90 90]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/L L]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/EntrezGene.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/EntrezGene.ttl]\n",
"\n",
"==== Linkset 92: Hac -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/92 92]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Hac Hac]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/HGNC.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/HGNC.ttl]\n",
"\n",
"==== Linkset 94: Ip -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/94 94]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ip Ip]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/IPI.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/IPI.ttl]\n",
"\n",
"==== Linkset 96: I -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/96 96]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/I I]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/Interpro.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/Interpro.ttl]\n",
"\n",
"==== Linkset 98: lrg -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/98 98]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/lrg lrg]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/LRG.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/LRG.ttl]\n",
"\n",
"==== Linkset 100: merops -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/100 100]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/merops merops]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/MEROPS.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/MEROPS.ttl]\n",
"\n",
"==== Linkset 102: M -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/102 102]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/M M]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/MGI.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/MGI.ttl]\n",
"\n",
"==== Linkset 104: En -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/104 104]"
]
},
{
"output_type": "stream",
"stream": "stdout",
"text": [
"\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/OTTG.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/OTTG.ttl]\n",
"\n",
"==== Linkset 106: orphanet -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/106 106]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/orphanet orphanet]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/Orphanet.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/Orphanet.ttl]\n",
"\n",
"==== Linkset 108: Pd -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/108 108]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Pd Pd]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/PDB.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/PDB.ttl]\n",
"\n",
"==== Linkset 110: Rf -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/110 110]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Rf Rf]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/RFAM.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/RFAM.ttl]\n",
"\n",
"==== Linkset 112: R -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/112 112]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/R R]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/RGD.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/RGD.ttl]\n",
"\n",
"==== Linkset 114: Q -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/114 114]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Q Q]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/RefSeq.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/RefSeq.ttl]\n",
"\n",
"==== Linkset 116: uniparc -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/116 116]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/uniparc uniparc]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/UniParc.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/UniParc.ttl]\n",
"\n",
"==== Linkset 118: Z -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/118 118]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Z Z]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/ZFIN_ID.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/ZFIN_ID.ttl]\n",
"\n",
"==== Linkset 120: F -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/120 120]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/F F]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/flybase.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/flybase.ttl]\n",
"\n",
"==== Linkset 122: En -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/122 122]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/linkSetENSGENST.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/linkSetENSGENST.ttl]\n",
"\n",
"==== Linkset 124: Mb -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/124 124]"
]
},
{
"output_type": "stream",
"stream": "stdout",
"text": [
"\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Mb Mb]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/miRBase.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/miRBase.ttl]\n",
"\n",
"==== Linkset 126: S -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/126 126]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/nonHuman_uniprot.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/nonHuman_uniprot.ttl]\n",
"\n",
"==== Linkset 128: G -- En ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/128 128]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/G G]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/En En]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ensembl/protein_id.ttl http://data.openphacts.org/1.5/ims/linksets/ensembl/protein_id.ttl]\n",
"\n",
"==== Linkset 130: AERS -- Dr ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/130 130]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/AERS AERS]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/Dr Dr]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/aers_drugbank_linkset.ttl http://data.openphacts.org/1.5/ims/linksets/aers_drugbank_linkset.ttl]\n",
"\n",
"==== Linkset 132: Chembl16TargetComponent -- ChemblTarget ====\n",
"* Title: The ChEMBL Target to Target Component Linkset\n",
"* Created by: [http://orcid.org/0000-0002-8011-0300 http://orcid.org/0000-0002-8011-0300]\n",
"* Created on: 2013-07-26T10:02:03+01:00\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/132 132]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Chembl16TargetComponent Chembl16TargetComponent]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ChemblTarget ChemblTarget]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ChEMBL16.2/chembl_16.2_target_targetcmpt_ls.ttl http://data.openphacts.org/1.5/ims/linksets/ChEMBL16.2/chembl_16.2_target_targetcmpt_ls.ttl]\n",
"\n",
"==== Linkset 134: S -- Chembl16TargetComponent ====\n",
"* Title: The ChEMBL Target Component to UniProt Linkset\n",
"* Created by: [http://orcid.org/0000-0002-8011-0300 http://orcid.org/0000-0002-8011-0300]\n",
"* Created on: 2013-07-26T10:02:03+01:00\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/134 134]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/Chembl16TargetComponent Chembl16TargetComponent]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ChEMBL16.2/chembl_16.2_targetcmpt_uniprot_ls.ttl http://data.openphacts.org/1.5/ims/linksets/ChEMBL16.2/chembl_16.2_targetcmpt_uniprot_ls.ttl]\n",
"\n",
"==== Linkset 136: Cs -- ConceptWiki ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/136 136]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Cs Cs]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/chemspider.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/chemspider.ttl]\n",
"\n",
"==== Linkset 138: Dr -- ConceptWiki ====\n",
"* Title: ConceptWiki DrugBank proteins Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:David https://wiki.nbic.nl/index.php/User:David]\n",
"* Created on: 2012-09-13T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/138 138]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Dr Dr]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/drugbank_ca_drugs-protein.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/drugbank_ca_drugs-protein.ttl]\n",
"\n",
"==== Linkset 140: E -- ConceptWiki ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/140 140]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/E E]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/enzyme_expasy_org.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/enzyme_expasy_org.ttl]\n",
"\n",
"==== Linkset 142: MSH -- ConceptWiki ====\n",
"* Title: ConceptWiki http://purl.bioontology.org/ontology/MSH Exact Match Linkset\n",
"* Created by: [https://wiki.nbiceng.net/index.php/User:enckevort https://wiki.nbiceng.net/index.php/User:enckevort]\n",
"* Created on: 2013-12-11T13:37:16.465+01:00\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/142 142]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/MSH MSH]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_MSH-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_MSH-compound.ttl]\n",
"\n",
"==== Linkset 144: MSH -- ConceptWiki ====\n",
"* Title: ConceptWiki http://purl.bioontology.org/ontology/MSH Exact Match Linkset\n",
"* Created by: [https://wiki.nbiceng.net/index.php/User:enckevort https://wiki.nbiceng.net/index.php/User:enckevort]\n",
"* Created on: 2013-12-11T13:38:35.776+01:00\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/144 144]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/MSH MSH]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_MSH-gene.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_MSH-gene.ttl]\n",
"\n",
"==== Linkset 146: MSH -- ConceptWiki ====\n",
"* Title: "
]
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"text": [
" ConceptWiki http://purl.bioontology.org/ontology/MSH Exact Match Linkset\n",
"* Created by: [https://wiki.nbiceng.net/index.php/User:enckevort https://wiki.nbiceng.net/index.php/User:enckevort]\n",
"* Created on: 2013-12-11T13:38:35.791+01:00\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/146 146]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/MSH MSH]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_MSH-protein.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_MSH-protein.ttl]\n",
"\n",
"==== Linkset 148: MSH -- ConceptWiki ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/148 148]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/MSH MSH]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_MSH.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_MSH.ttl]\n",
"\n",
"==== Linkset 150: NCIM -- ConceptWiki ====\n",
"* Title: ConceptWiki http://purl.bioontology.org/ontology/NCIM Exact Match Linkset\n",
"* Created by: [https://wiki.nbiceng.net/index.php/User:enckevort https://wiki.nbiceng.net/index.php/User:enckevort]\n",
"* Created on: 2013-12-11T13:38:26.186+01:00\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/150 150]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/NCIM NCIM]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_NCIM-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_NCIM-compound.ttl]\n",
"\n",
"==== Linkset 152: NCIM -- ConceptWiki ====\n",
"* Title: ConceptWiki http://purl.bioontology.org/ontology/NCIM Exact Match Linkset\n",
"* Created by: [https://wiki.nbiceng.net/index.php/User:enckevort https://wiki.nbiceng.net/index.php/User:enckevort]\n",
"* Created on: 2013-12-11T13:38:35.776+01:00\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/152 152]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/NCIM NCIM]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_NCIM-gene.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_NCIM-gene.ttl]\n",
"\n",
"==== Linkset 154: NCIM -- ConceptWiki ====\n",
"* Title: ConceptWiki http://purl.bioontology.org/ontology/NCIM Exact Match Linkset\n",
"* Created by: [https://wiki.nbiceng.net/index.php/User:enckevort https://wiki.nbiceng.net/index.php/User:enckevort]\n",
"* Created on: 2013-12-11T13:38:35.79+01:00\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/154 154]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/NCIM NCIM]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_NCIM-protein.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_NCIM-protein.ttl]\n",
"\n",
"==== Linkset 156: NCIM -- ConceptWiki ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/156 156]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/NCIM NCIM]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_NCIM.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_bioontology_org_ontology_NCIM.ttl]\n",
"\n",
"==== Linkset 158: Ce -- ConceptWiki ====\n",
"* Title: ConceptWiki Chebi compounds Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:David https://wiki.nbic.nl/index.php/User:David]\n",
"* Created on: 2013-01-17T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/158 158]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ce Ce]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_obolibrary_org_obo-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_obolibrary_org_obo-compound.ttl]\n",
"\n",
"==== Linkset 160: T -- ConceptWiki ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/160 160]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/T T]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_org_obo_owl_GO.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/purl_org_obo_owl_GO.ttl]\n",
"\n",
"==== Linkset 162: ChEMBLCompound -- ConceptWiki ====\n",
"* Title: ConceptWiki Chembl Compounds Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:Leon https://wiki.nbic.nl/index.php/User:Leon]\n",
"* Created on: 2013-01-17T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/162 162]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/ChEMBLCompound ChEMBLCompound]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/rdf_ebi_ac_uk_resource_chembl_molecule-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/rdf_ebi_ac_uk_resource_chembl_molecule-compound.ttl]\n",
"\n",
"==== Linkset 164: Wp -- ConceptWiki ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/164 164]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Wp Wp]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/wikipathways.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/wikipathways.ttl]\n",
"\n",
"==== Linkset 166: Dr -- ConceptWiki ====\n",
"* Title: "
]
},
{
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"text": [
" ConceptWiki Drugbank compounds Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:David https://wiki.nbic.nl/index.php/User:David]\n",
"* Created on: 2013-01-17T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/166 166]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Dr Dr]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www4_wiwiss_fu_berlin_de_drugbank_resource_drugs-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www4_wiwiss_fu_berlin_de_drugbank_resource_drugs-compound.ttl]\n",
"\n",
"==== Linkset 168: drugbankTarget -- ConceptWiki ====\n",
"* Title: ConceptWiki http://www4.wiwiss.fu-berlin.de/drugbank/resource/targets Exact Match Linkset\n",
"* Created by: [https://wiki.nbiceng.net/index.php/User:enckevort https://wiki.nbiceng.net/index.php/User:enckevort]\n",
"* Created on: 2013-12-11T13:38:35.782+01:00\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/168 168]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/drugbankTarget drugbankTarget]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www4_wiwiss_fu_berlin_de_drugbank_resource_targets-protein.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www4_wiwiss_fu_berlin_de_drugbank_resource_targets-protein.ttl]\n",
"\n",
"==== Linkset 170: Dr -- ConceptWiki ====\n",
"* Title: ConceptWiki Drugbank compounds Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:David https://wiki.nbic.nl/index.php/User:David]\n",
"* Created on: 2013-01-17T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/170 170]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Dr Dr]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_drugbank_ca_drugs-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_drugbank_ca_drugs-compound.ttl]\n",
"\n",
"==== Linkset 172: ChEMBLCompound -- ConceptWiki ====\n",
"* Title: ConceptWiki Chembl Compounds Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:Leon https://wiki.nbic.nl/index.php/User:Leon]\n",
"* Created on: 2013-01-17T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/172 172]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/ChEMBLCompound ChEMBLCompound]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_ebi_ac_uk_chembldb_index_php_compound_inspect-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_ebi_ac_uk_chembldb_index_php_compound_inspect-compound.ttl]\n",
"\n",
"==== Linkset 174: Ch -- ConceptWiki ====\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/174 174]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Ch Ch]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_hmdb_ca_metabolites-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_hmdb_ca_metabolites-compound.ttl]\n",
"\n",
"==== Linkset 176: Pd -- ConceptWiki ====\n",
"* Title: ConceptWiki PDB Ligands Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:Leon https://wiki.nbic.nl/index.php/User:Leon]\n",
"* Created on: 2013-01-17T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/176 176]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Pd Pd]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_pdb_org_pdb_explore-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_pdb_org_pdb_explore-compound.ttl]\n",
"\n",
"==== Linkset 178: Pd -- ConceptWiki ====\n",
"* Title: ConceptWiki Swiss-Prot PDB Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:David https://wiki.nbic.nl/index.php/User:David]\n",
"* Created on: 2012-09-13T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/178 178]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/Pd Pd]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_pdb_org_pdb_explore-protein.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_pdb_org_pdb_explore-protein.ttl]\n",
"\n",
"==== Linkset 180: pdb.ligand -- ConceptWiki ====\n",
"* Title: ConceptWiki PDB Ligands Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:Leon https://wiki.nbic.nl/index.php/User:Leon]\n",
"* Created on: 2013-01-17T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/180 180]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/pdb.ligand pdb.ligand]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_pdb_org_pdb_ligand-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_pdb_org_pdb_ligand-compound.ttl]\n",
"\n",
"==== Linkset 182: S -- ConceptWiki ====\n",
"* Title: ConceptWiki Swiss-Prot Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:Kees https://wiki.nbic.nl/index.php/User:Kees]\n",
"* Created on: 2012-09-13T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/182 182]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_uniprot_org_uniprot-compound.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_uniprot_org_uniprot-compound.ttl]\n",
"\n",
"==== Linkset 184: S -- ConceptWiki ====\n",
"* Title: ConceptWiki Swiss-Prot Genes Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:Kees https://wiki.nbic.nl/index.php/User:Kees]\n",
"* Created on: 2012-09-13T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/184 184]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_uniprot_org_uniprot-gene.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_uniprot_org_uniprot-gene.ttl]\n",
"\n",
"==== Linkset 186: S -- ConceptWiki ====\n",
"* Title: "
]
},
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"text": [
" ConceptWiki Swiss-Prot Exact Match Linkset\n",
"* Created by: [https://wiki.nbic.nl/index.php/User:Kees https://wiki.nbic.nl/index.php/User:Kees]\n",
"* Created on: 2012-09-13T16:02:27Z\n",
"* Mapping set: [http://ops2.few.vu.nl/QueryExpander/mappingSet/186 186]\n",
"* Source: [http://ops2.few.vu.nl/QueryExpander/dataSource/S S]\n",
"* Target: [http://ops2.few.vu.nl/QueryExpander/dataSource/ConceptWiki ConceptWiki]\n",
"* Linkset: [http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_uniprot_org_uniprot-protein.ttl http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/www_uniprot_org_uniprot-protein.ttl]\n"
]
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