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In the context of coronavirus, let's revisit this post about risk accumulation. https://twitter.com/statwonk/status/1160542394544267265?s=20
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library(tidyverse) | |
library(ggthemes) | |
expand.grid( | |
risk = seq(0.1/5e3, 1/5e3, 1e-05), # average daily risk e.g. - 1,000 infected per day in Alabama / 5,000,000 AL population | |
units_of_exposure = seq_len(31) # days of exposure (up to 31 days) | |
) %>% as_tibble() %>% | |
mutate(total_risk = map2_dbl(risk, units_of_exposure, ~ 1 - (1 - .x)^(.y)), | |
total_odds = 1/total_risk, | |
risk_threshold = case_when(total_odds <= 5e2 ~ "Worse than 1 in 500", | |
total_odds <= 1e3 ~ "Worse than 1 in 1k chance", | |
TRUE ~ "Better than 1 in 1k chance"), | |
risk_threshold = factor(risk_threshold, levels = c( | |
"Worse than 1 in 100", "Worse than 1 in 500", "Worse than 1 in 1k chance", "Better than 1 in 1k chance" | |
))) %>% | |
ggplot(aes(x = risk*5e6, y = units_of_exposure)) + | |
geom_raster(aes(fill = risk_threshold), alpha = 0.6) + | |
theme(panel.grid.major = element_line(color = "black")) + | |
geom_vline(xintercept = 1e3) + | |
labs(y = "Units of exposure", | |
x = "Risk per unit", | |
title = "Risk accumulates w/ exposure, but how (fast) slowly?") + | |
scale_fill_colorblind(name = "Risk threshold") + | |
scale_x_continuous(labels = scales::comma) + | |
xlab("Alabama daily case rate") + | |
theme_bw(20) + theme(legend.position = "top") |
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