stefanv

(use-package zenburn-theme
  :config
  (setq org-fontify-whole-heading-line t
        org-fontify-quote-and-verse-blocks t)
  (load-theme 'zenburn t)
  (zenburn-with-color-variables
    (custom-theme-set-faces
     'zenburn
     `(org-level-1 ((t (:inherit ,z-variable-pitch
                                 :foreground ,zenburn-orange

stefanv

#!/bin/bash
curl "https://api.github.com/repos/numpy/numpy/pulls?page=1&per_page=100" > prs0.json
curl "https://api.github.com/repos/numpy/numpy/pulls?page=2&per_page=100" > prs1.json
curl "https://api.github.com/repos/numpy/numpy/pulls?page=3&per_page=100" > prs2.json

stefanv

#!/usr/bin/env python

import subprocess
import sys
from skimage import io, filters
import numpy as np

filename = sys.argv[1]
base, ext = filename.rsplit('.', 1)
outfile = f'{base} cropped.{ext}'

stefanv

import numpy as np

xs = np.linspace(2, 5, 10000)  # 10000 samples of x between 2 and 5
ys = np.linspace(1, 2, 10000)  # 10000 samples of y between 1 and 2
ix = np.random.randint(0, 10000, size=(10000, 2))  # random index, 2 parameters


def my_model(x, y):
    ... # do some magic
    return 42  # spit out your evaluation of the model for a given x, y

stefanv

$ PYTHONPATH=. pytest  --doctest-modules networkx/generators/spectral_graph_forge.py
================================================================================ test session starts ================================================================================
platform linux -- Python 3.7.4+, pytest-4.3.1, py-1.8.0, pluggy-0.12.0
Using --randomly-seed=1570776077
rootdir: /home/stefan/src/networkx, inifile:
plugins: randomly-2.1.1
collected 1 item                                                                                                                                                                    

networkx/generators/spectral_graph_forge.py s                                                                                                                                 [100%]

stefanv

stefanv

function workon {
  ENVS=${HOME}/envs
  TARGET=$ENVS/${1}
  if [[ -z ${1} || ! -d $TARGET ]]; then
      echo "Invalid environment.  Choose from:"
      ls $ENVS
  else
      unset PYTHONPATH
      source $TARGET/bin/activate
  fi

stefanv

@article{Abernathey2017,
author = "Abernathey, Ryan and Paul, Kevin and Hamman, Joe and Rocklin, Matthew and Lepore, Chiara and Tippett, Michael and Henderson, Naomi and Seager, Richard and May, Ryan and Del Vento, Davide",
title = "{Pangeo NSF Earthcube Proposal}",
year = "2017",
month = "8",
url = "https://figshare.com/articles/Pangeo_NSF_Earthcube_Proposal/5361094",
doi = "10.6084/m9.figshare.5361094.v1"
}

stefanv

===================================================================================== FAILURES ======================================================================================
______________________________________________________________________________ test_minor_axis_length _______________________________________________________________________________

    def test_minor_axis_length():
        length = regionprops(SAMPLE)[0].minor_axis_length
        # MATLAB has different interpretation of ellipse than found in literature,
        # here implemented as found in literature
>       assert_almost_equal(length, 9.739302807263)
E       AssertionError: 
E       Arrays are not almost equal to 7 decimals

stefanv

_________________________________________________________________________________ test_convex_image _________________________________________________________________________________

    def test_convex_image():
        img = regionprops(SAMPLE)[0].convex_image
        # determined with MATLAB
        ref = np.array(
            [[0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0],
             [0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0],
             [0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0],
             [0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0],