taurus@TUD: Install PIConGPU dependencies to run on the `ml` partition with Power9 nodes

PIConGPU_0.4.3_taurus-tud.sh

#!/usr/bin/env bash
#
# Authors: Axel Huebl, Marco Garten, Klaus Steiniger
#
# last updated: 2019-04-24

PIC_BRANCH="dev"

# get PIConGPU profile
if [ ! -f "$PIC_PROFILE" ]; then
    export PIC_PROFILE_NAME="$HOME/V100_picongpu.profile"
    wget -O $PIC_PROFILE_NAME \
        https://raw.githubusercontent.com/ComputationalRadiationPhysics/picongpu/dev/etc/picongpu/taurus-tud/V100_picongpu.profile.example
    # load modules
    source "$PIC_PROFILE_NAME"
else
    source "$PIC_PROFILE"
fi

set -euf -o pipefail

# create temporary directory for software source files
export SOURCE_DIR="$HOME/lib_temp"
mkdir -p $SOURCE_DIR

#   c-blosc
if [ ! -d "$BLOSC_ROOT" ]; then
    cd $SOURCE_DIR
    git clone -b v1.16.2 https://github.com/Blosc/c-blosc.git \
        $SOURCE_DIR/c-blosc
    mkdir c-blosc-build
    cd c-blosc-build
    cmake -DCMAKE_INSTALL_PREFIX=$BLOSC_ROOT \
        -DPREFER_EXTERNAL_ZLIB=ON \
        $SOURCE_DIR/c-blosc
    make -j4
    make install
fi

#   Boost
if [ ! -d "$BOOST_ROOT" ]; then
    cd $SOURCE_DIR
    wget -O boost_1_68_0.tar.gz \
        https://sourceforge.net/projects/boost/files/boost/1.68.0/boost_1_68_0.tar.gz/download
    tar -xf boost_1_68_0.tar.gz
    cd boost_1_68_0
    ./bootstrap.sh --with-libraries=atomic,chrono,context,date_time,fiber,filesystem,math,program_options,regex,serialization,system,thread \
        --with-toolset=gcc --prefix=$BOOST_ROOT
    ./b2 cxxflags="-std=c++11" -j4
    ./b2 install
fi

#   ADIOS
if [ ! -d "$ADIOS_ROOT" ]; then
    cd $SOURCE_DIR
    wget https://users.nccs.gov/~pnorbert/adios-1.13.1.tar.gz
    tar -xf adios-1.13.1.tar.gz
    cd adios-1.13.1
    CFLAGS="-fPIC" ./configure --enable-static --enable-shared \
        --disable-fortran \
        --with-mpi \
        --with-zlib \
        --with-blosc=$BLOSC_ROOT \
        --prefix=$ADIOS_ROOT
    make
    make install
fi

#   PNGwriter
if [ ! -d "$PNGwriter_DIR" ]; then
    cd $SOURCE_DIR
    git clone -b 0.7.0 https://github.com/pngwriter/pngwriter.git \
        $SOURCE_DIR/pngwriter
    mkdir pngwriter-build
    cd pngwriter-build
    cmake -DCMAKE_INSTALL_PREFIX=$PNGwriter_DIR \
        $SOURCE_DIR/pngwriter
    make install
fi

#   HDF5
if [ ! -d "$HDF5_ROOT" ]; then
    echo "Installing parallel HDF5..."
    cd $SOURCE_DIR
    curl -L -s -o hdf5_1.8.20.tar.gz \
        https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz
    tar -xf hdf5_1.8.20.tar.gz
    cd hdf5-1.8.20
    ./configure --build=`uname -p` --enable-parallel --enable-shared --disable-fortran \
        --prefix=$HDF5_ROOT CC=mpicc CXX=mpic++
    make CC=mpicc CXX=mpic++
    make install
fi


#   Splash
if [ ! -d "$Splash_DIR" ]; then
    git clone -b v1.7.0 https://github.com/ComputationalRadiationPhysics/libSplash.git \
        $SOURCE_DIR/splash
    mkdir $SOURCE_DIR/splash-build
    cd $SOURCE_DIR/splash-build
    cmake -DCMAKE_INSTALL_PREFIX=$Splash_DIR $SOURCE_DIR/splash
    make install
fi

cd $HOME

# get PIConGPU
if [ ! -d "$PICSRC" ]; then
    git clone -b $PIC_BRANCH https://github.com/ComputationalRadiationPhysics/picongpu.git \
        "$PICSRC"
fi

# message to user
echo ''
echo 'edit user & email within picongpu.profile, e.g. via:'
echo '    vim $PIC_PROFILE'