steveandroulakis

{
  "annotations": {
    "list": [
      {
        "$$hashKey": "object:71",
        "builtIn": 1,
        "datasource": "-- Grafana --",
        "enable": true,
        "hide": true,
        "iconColor": "rgba(0, 211, 255, 1)",

steveandroulakis

{
  "__inputs": [
    {
      "name": "DS_TEMPORALMETRICS",
      "label": "TemporalMetrics",
      "description": "",
      "type": "datasource",
      "pluginId": "prometheus",
      "pluginName": "Prometheus"
    }

steveandroulakis

apiVersion: traefik.containo.us/v1alpha1
kind: IngressRoute
metadata:
  name: grafana-ingress
  namespace: monitoring
spec:
  entryPoints:
  - web
  routes:
  - kind: Rule

steveandroulakis

#!/usr/bin/python

import sys, getopt
import glob
import os
import ntpath

from time import strftime
print '******bam_pipe******'
print strftime("%Y-%m-%d %H:%M:%S")

steveandroulakis

## bioapps TCP

### Aws location:

* Monash eSol AWS account [https://login.monash.edu/adfs/ls/idpinitiatedsignon](https://login.monash.edu/adfs/ls/idpinitiatedsignon)
* RES-SPT-Automation/Steve.Androulakis@monash.edu
* Oregon availability zone
* Elastic Beanstalk controlled

### Elastic beanstalk scaling settings

steveandroulakis

#!/bin/bash -i
sudo apt-get update < "/dev/null"
sudo apt-get install python-pip -y < "/dev/null"
sudo pip install awscli < "/dev/null"

# use eg. curl -s https://myurl.com/script.sh | bash /dev/stdin
# only run on an empty cloud server with blank vdb volume attached!
sudo apt-get update < "/dev/null"
sudo apt-get install curl -y < "/dev/null"
sudo true

steveandroulakis

# use eg. curl -s https://myurl.com/script.sh | bash /dev/stdin
# only run on an empty cloud server with blank vdb volume attached!
sudo apt-get update < "/dev/null"
sudo apt-get install curl -y < "/dev/null"
sudo true

# Install kernel extra's to enable docker aufs support
sudo apt-get -y install linux-image-extra-$(uname -r) < "/dev/null"

# Add Docker PPA and install latest version

steveandroulakis

#!/bin/bash

HOME_DIR=/home/

for name in $(find $HOME_DIR -maxdepth 1 -mindepth 1 -type d -printf '%f\n')
do
  echo "USER = $name"
  echo "DIR = $HOME_DIR$name"
  WEB_DIR=/home/www/html/home/$name
  #WEB_DIR=$name

steveandroulakis

# -*- coding: utf-8 -*-
from mytardisuploader import mytardis_uploader
# steve.androulakis@monash.edu

address = 'http://118.138.233.132/'
username = 'mytardis'
password = 'astestdep'
institute = 'Monash University'
test_run = True

steveandroulakis

from sqlalchemy import *
from sqlalchemy.ext.declarative import declarative_base
from sqlalchemy.orm import scoped_session, sessionmaker
import mytardis_uploader
import os.path

# steve.androulakis@monash.edu
# Run as root (the LaRDS mytardis_its filestore needs it)
# Turn test=False at the bottom of this script to run
# for real.