Created
September 23, 2015 19:38
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Generate a log based on directory names, and enter values from each directory into the log's entries
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#!/bin/bash | |
# set the proper permissions for all files created by this script | |
umask 007 | |
# make sure that the log file exists | |
LOG=/path/to/log.tsv | |
touch $LOG | |
# find the list of directory names to enter into the log, they all start with a 1 | |
FILES=$(find /path/to/dirs/1* -maxdepth 0 -type d) | |
for i in $FILES; do | |
# find the number of items in each run, based on the number dirs with names that start with L | |
LANES=$(find $i/subdir -maxdepth 1 -name 'L*' | wc -l); | |
# find a certain value within an Parameters.xml file that each dir will contain | |
# in the .xml, it is formatted like this: | |
# <DesiredValue>6</DesiredValue> | |
EXPNAME=$(grep DesiredValue $i/Parameters.xml | cut -f 2 -d '>' | cut -f 1 -d '<'); | |
# concatenate the output into the log in TSV format | |
# need -e to make the \t work right | |
echo -e "$(basename $i)\t$LANES\t$EXPNAME">> $LOG; | |
done | |
# use sort unique to remove the duplicate entries | |
# because the entire list is being appended repeatedly | |
sort -u $LOG -o $LOG | |
# output the log to console | |
cat $LOG |
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