netj

#!/usr/bin/env python
import sys,csv
for row in csv.reader(sys.stdin):
  print "\t".join(row)

brentp

wget http://www.openbioinformatics.org/annovar/download/annovar.latest.tar.gz.mirror
tar xzvf annovar.tar.gz
cd annovar

# download databases (goes to UCSC)
./annotate_variation.pl -buildver hg19 -downdb 1000g2010nov humandb
./annotate_variation.pl -buildver hg19 -downdb avsift humandb
./annotate_variation.pl -buildver hg19 -downdb refGene humandb
./annotate_variation.pl -buildver hg19 -downdb mce46way humandb/
./annotate_variation.pl -buildver hg19 -downdb snp131 humandb/

dsosby

[Obsidian]
definition-foreground = #678CB1
error-foreground = #FF0000
string-background = #293134
keyword-foreground = #93C763
normal-foreground = #E0E2E4
comment-background = #293134
hit-foreground = #E0E2E4
builtin-background = #293134
stdout-foreground = #678CB1

un33k

FILE SPACING:

 # double space a file
 sed G

 # double space a file which already has blank lines in it. Output file
 # should contain no more than one blank line between lines of text.
 sed '/^$/d;G'

dupuy

Markdown and reStructuredText

GitHub supports several lightweight markup languages for documentation; the most popular ones (generally, not just at GitHub) are Markdown and reStructuredText. Markdown is sometimes considered easier to use, and is often preferred when the purpose is simply to generate HTML. On the other hand, reStructuredText is more extensible and powerful, with native support (not just embedded HTML) for tables, as well as things like automatic generation of tables of contents.

hrldcpr

One-line Tree in Python

Using Python's built-in defaultdict we can easily define a tree data structure:

def tree(): return defaultdict(tree)

That's it!

alexalemi

import math
class Welford(object):
    """ Implements Welford's algorithm for computing a running mean
    and standard deviation as described at: 
        http://www.johndcook.com/standard_deviation.html

    can take single values or iterables

    Properties:
        mean    - returns the mean

JoshuaEstes

Moved to https://github.com/JoshuaEstes/CheatSheets

lukaslundgren

sudo apt-get install build-essential libsqlite3-dev zlib1g-dev libncurses5-dev libgdbm-dev libbz2-dev libreadline5-dev libssl-dev libdb-dev

wget http://www.python.org/ftp/python/2.7.3/Python-2.7.3.tgz
tar -xzf Python-2.7.3.tgz
cd Python-2.7.3

./configure --prefix=/usr --enable-shared
make
sudo make install
cd ..

joaopizani

# the following two lines give a two-line status, with the current window highlighted
hardstatus alwayslastline
hardstatus string '%{= kG}[%{G}%H%? %1`%?%{g}][%= %{= kw}%-w%{+b yk} %n*%t%?(%u)%? %{-}%+w %=%{g}][%{B}%m/%d %{W}%C%A%{g}]'

# huge scrollback buffer
defscrollback 5000

# no welcome message
startup_message off