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dependency analysis
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| package | Published: | Depends: | Imports: | Suggests: | |
|---|---|---|---|---|---|
| QCApro | 2016-01-27 | R (≥ 3.2.2) | lpSolve, utils | QCA3 (≤ 0.0-7), QCAGUI (≤ 2.0), testthat (≤ 0.11.0) | |
| QCA | 2016-01-27 | R (≥ 3.2.2) | lpSolve, utils | QCA3 (≤ 0.0-7), QCAGUI (≤ 2.0), testthat (≤ 0.11.0) | |
| lsgl | 2015-09-19 | R (≥ 3.0.0), sglOptim (== 1.2.0), Matrix | methods, utils, stats | NA | |
| msgl | 2015-09-19 | R (≥ 3.0.0), Matrix, sglOptim (== 1.2.0) | methods, utils, stats | NA | |
| rplos | 2015-09-16 | ggplot2 | methods, utils, stats, httr, jsonlite, dplyr, plyr, lubridate, reshape2, whisker, solr (≤ 0.1.6) | XML, testthat, roxygen2, knitr | |
| CAvariants | 2015-09-11 | R (> 3.0.1), methods | NA | NA | |
| RDML | 2015-07-22 | R (> 3.0.3) | R6 (≥ 2.0.1), assertthat (≥ 0.1), XML (≥ 3.98-1.1), plyr (≥ 1.8.1), dplyr (≥ 0.4.1), tidyr (≥ 0.2.0), rlist (≥ 0.4) | knitr, chipPCR, ggplot2 | |
| kineticF | 2015-06-04 | R (> 3.1.0) | circular, lqmm, splancs, sp, plotrix, MASS | NA | |
| XLConnect | 2015-03-01 | R (≥ 2.10.0), XLConnectJars (== 0.2-9) | methods, rJava | RUnit, lattice, ggplot2 (≥ 0.9.3), zoo | |
| metaRNASeq | 2015-01-26 | R (≥ 2.15.0) | NA | HTSFilter (≥ 0.1.1), DESeq (≥ 1.8.3), DESeq2 (≥ 1.0.17), VennDiagram (≤ 1.6.7) |
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| library(rvest) | |
| library(magrittr) | |
| library(stringr) | |
| library(data.table) | |
| availablePackagesSession <- html_session("http://cran.uni-muenster.de/web/packages/available_packages_by_date.html") | |
| packagesToCheck <- read_html("http://cran.uni-muenster.de/web/packages/available_packages_by_date.html") %>% | |
| html_node('table') %>% | |
| html_table | |
| checkPackageDescription <- function(packageDescription, comparators = c('≤','<','>','=')) { | |
| lapply(na.omit(packageDescription[c("Depends:", "Imports:", "Suggests:")]), | |
| function(value) { | |
| ifelse(str_detect(value, paste0(comparators, collapse = "|")), value, NA) | |
| }) %>% | |
| unlist %>% | |
| na.omit %>% | |
| names %>% | |
| paste0(collapse = ", ") | |
| } | |
| checkedPackages <- | |
| packagesToCheck %$% | |
| Package %>% | |
| sapply(function(packageName) { | |
| packageDescription <- | |
| follow_link(availablePackagesSession, packageName) %$% | |
| url %>% | |
| read_html %>% | |
| html_node('p+ table') %>% | |
| html_table %>% { | |
| packageDescription <- .$X2 | |
| names(packageDescription) <- .$X1 | |
| return(packageDescription) | |
| } | |
| checkPackageDescription(packageDescription) | |
| }) | |
| checkedPackages %<>% | |
| data.frame(Package = names(.), fieldsWithComparator = ., row.names = NULL, stringsAsFactors = FALSE) | |
| checkedPackages | |
| descriptions <- | |
| checkedPackages %>% | |
| subset(fieldsWithComparator != "") %$% | |
| {packagesWithWeirdComparators <- Package} %T>% | |
| print %>% | |
| lapply(function(packageName) { | |
| packageDescription <- | |
| follow_link(availablePackagesSession, packageName) %$% | |
| url %>% | |
| read_html %>% | |
| html_node('p+ table') %>% | |
| html_table %>% { | |
| packageDescription <- .$X2 | |
| names(packageDescription) <- .$X1 | |
| return(packageDescription) | |
| } %>% | |
| `[`(c("Depends:", "Imports:", "Suggests:", "Published:")) | |
| }) | |
| descriptions %>% | |
| lapply(function(x) t(x) %>% data.table) %>% | |
| rbindlist %>% | |
| set(j = "package", value = packagesWithWeirdComparators) %>% | |
| setcolorder(c("package", "Published:", "Depends:", "Imports:", "Suggests:")) %>% | |
| write.table(file = "packages_with_comparators.tsv", sep = "\t", row.names = FALSE) |
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