| application { | |
| name = "dairy-queen" | |
| type = "python" | |
| dependency { | |
| source = "git::https://gist.github.com/2694a602beadee7f6a77.git" | |
| } | |
| } | |
| /* | |
| customization { |
| 590a1469-c01c-5d41-122f-3ca4e58180d2 | |
| DO NOT MODIFY OR DELETE THIS FILE! | |
| This file should be checked in to version control. Do not ignore this file. | |
| The first line is a unique UUID that represents the Appfile in this directory. | |
| This UUID is used globally across your projects to identify this specific | |
| Appfile. This UUID allows you to modify the name of an application, or have | |
| duplicate application names without conflicting. |
| #! /bin/sh | |
| ### BEGIN INIT INFO | |
| # Provides: jupyter-notebook | |
| # Required-Start: $remote_fs $syslog | |
| # Required-Stop: $remote_fs $syslog | |
| # Default-Start: 2 3 4 5 | |
| # Default-Stop: 0 1 6 | |
| # Short-Description: Start jupyter-notebook | |
| # Description: This file starts a jupyter-notebook session using config | |
| # parameters specified in ~/.jupyter/jupyter_notebook_config.py |
| "package" "Published:" "Depends:" "Imports:" "Suggests:" | |
| "QCApro" "2016-01-27" "R (≥ 3.2.2)" "lpSolve, utils" "QCA3 (≤ 0.0-7), QCAGUI (≤ 2.0), testthat (≤ 0.11.0)" | |
| "QCA" "2016-01-27" "R (≥ 3.2.2)" "lpSolve, utils" "QCA3 (≤ 0.0-7), QCAGUI (≤ 2.0), testthat (≤ 0.11.0)" | |
| "lsgl" "2015-09-19" "R (≥ 3.0.0), sglOptim (== 1.2.0), Matrix" "methods, utils, stats" NA | |
| "msgl" "2015-09-19" "R (≥ 3.0.0), Matrix, sglOptim (== 1.2.0)" "methods, utils, stats" NA | |
| "rplos" "2015-09-16" "ggplot2" "methods, utils, stats, httr, jsonlite, dplyr, plyr, lubridate, reshape2, whisker, solr (≤ 0.1.6)" "XML, testthat, roxygen2, knitr" | |
| "CAvariants" "2015-09-11" "R (> 3.0.1), methods" NA NA | |
| "RDML" "2015-07-22" "R (> 3.0.3)" "R6 (≥ 2.0.1), assertthat (≥ 0.1), XML (≥ 3.98-1.1), plyr (≥ 1.8.1), dplyr (≥ 0.4.1), tidyr (≥ 0.2.0), rlist (≥ 0.4)" "knitr, chipPCR, ggplot2" | |
| "kineticF" "2015-06-04" "R (> 3.1.0)" "circular, lqmm, splancs, sp, plotrix, MASS" NA | |
| "XLConnect" "2015-03-01" "R (≥ 2.10.0), XLConnectJars (== 0.2-9)" "methods, rJava" "RUnit, lat |
The core of this tutorial gist lies in bestPracticesWalkThrough.R. Running assumes you have the following packages at versions equal (or above) those specified
library('devtools') # 1.9.1
library('testthat') # 0.11.0
library('stringr') # 1.0.0
library('git2r') # 0.12.1
| " have vimr-plugin call rmarkdown::render | |
| function! RenderRMarkdown() | |
| " set autoread to supress W11 warning: | |
| " vim is going to complain about the rmd file already existing... | |
| :set autoread | |
| " get full file path via %:p | |
| ! Rscript -e "rmarkdown::render(commandArgs(TRUE)[2])" --args %:p | |
| endfunction | |
| " call RenderRMarkdown silently to suppress the "Press ENTER to continue" prompt |
| isFuncS3Generic <- function(func) { | |
| funcBody <- body(func) | |
| sum(grepl(pattern="UseMethod", x=funcBody)) != 0 | |
| } |
| table_5.1 <- matrix(0, nrow=4, ncol=4) | |
| column_names <- c("Pres", "Educ", "Inc", "%W") | |
| upper_tri <- c(253618, 55326, 12513, 37748108, 8121410, | |
| 6534383460, 131909, 32281, 14093097, 187312) | |
| table_5.1[upper.tri(table_5.1, diag=TRUE)] <- upper_tri | |
| table_5.1[lower.tri(table_5.1)] <- t(table_5.1)[lower.tri(table_5.1)] | |
| colnames(table_5.1) <- rownames(table_5.1) <- column_names |