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Sebastian Urchs surchs

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@surchs
surchs / ds000113.json
Created June 8, 2023 18:45
{
"age": {
"Annotations": {
"IsAbout": {
"TermURL": "nb:Age",
"Label": ""
}
},
"Description": "There should have been a description here, but there wasn't. :("
},
@surchs
surchs / openneuro_ds004349_annotated.json
Last active June 8, 2023 18:03
{
"participant_id": {
"Description": "Identification number for each participant",
"Annotations": {
"IsAbout": {
"TermURL": "nb:ParticipantID",
"Label": ""
}
}
},
@surchs
surchs / bagel_schema.json
Created June 8, 2023 03:26
A Neurobagel data dictionary schema
{
"title": "DataDictionary",
"description": "A data dictionary with human and machine readable information for a tabular data file",
"type": "object",
"additionalProperties": {
"anyOf": [
{
"$ref": "#/definitions/ContinuousColumn"
},
{
@surchs
surchs / using_getter.patch
Created January 26, 2023 16:41
Using the isPageAccessible getter in nav and tool-bar
diff --git a/components/next-page.vue b/components/next-page.vue
index f844ec6..bf4302e 100644
--- a/components/next-page.vue
+++ b/components/next-page.vue
@@ -14,7 +14,7 @@
<b-button
class="float-right"
data-cy="button-nextpage"
- :disabled="!pageData[getNextPage].accessible"
+ :disabled="!isPageAccessible(pageData[getNextPage].pageName)"
@surchs
surchs / conda_list_on_conda_env.txt
Created October 2, 2020 12:53
Conda environment error for dash-image-annotation
# Name Version Build Channel
_libgcc_mutex 0.1 main
blas 1.0 mkl
brotlipy 0.7.0 py38h7b6447c_1000
ca-certificates 2020.7.22 0
certifi 2020.6.20 py38_0
cffi 1.14.3 py38he30daa8_0
click 7.1.2 py_0
cloudpickle 1.6.0 py_0
cycler 0.10.0 py38_0
@surchs
surchs / dash-image-annotation.log
Created October 2, 2020 12:45
Console log for dash-image-annotation error
dash_renderer.v1_1_2m1576595738.min.js:20 The following error occurred while executing _dashprivate_dummy.children in order to update component "dummy.children" ⋁⋁⋁
en @ dash_renderer.v1_1_2m1576595738.min.js:20
dash_renderer.v1_1_2m1576595738.min.js:20 TypeError: Cannot read property 'click' of null
at Object.ns.children ((index):51)
at en (dash_renderer.v1_1_2m1576595738.min.js:20)
at dash_renderer.v1_1_2m1576595738.min.js:20
at dash_renderer.v1_1_2m1576595738.min.js:20
at dispatch (dash_renderer.v1_1_2m1576595738.min.js:1)
at dash_renderer.v1_1_2m1576595738.min.js:20
at Array.forEach (<anonymous>)
@surchs
surchs / cluster_matrix_demonstration.ipynb
Created August 19, 2020 04:23
This gist demonstrates a function used to visualize the hierarchical organization of functional brain networks in the MIST brain atlas
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@surchs
surchs / fmriprep_out_tree.txt
Created April 5, 2018 02:35
Example fmriprep output
fmriprep/
├── logs
├── sub-0050784
│   ├── anat
│   │   ├── sub-0050784_T1w_brainmask.nii.gz
│   │   ├── sub-0050784_T1w_class-CSF_probtissue.nii.gz
│   │   ├── sub-0050784_T1w_class-GM_probtissue.nii.gz
│   │   ├── sub-0050784_T1w_class-WM_probtissue.nii.gz
│   │   ├── sub-0050784_T1w_dtissue.nii.gz
│   │   ├── sub-0050784_T1w_preproc.nii.gz
@surchs
surchs / abide2_trt.ipynb
Created April 4, 2018 01:46
ABIDE 2 notebook
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@surchs
surchs / fmriprep_benchmark.tsv
Created March 7, 2018 02:36
Several runs with different settings on fmriprep v1.0.8
jid n_core n_sub n_thread State ExitCode Elapsed Time(S) Time(H) MaxVMSize(G) MaxRSS(G) AveRSS(G)
5832275 4 1 4 COMPLETED 0:0 02:07:17 7637.0 2.1213888888888888 5.986812 3.043676 0.548431
5832280 8 1 4 COMPLETED 0:0 01:50:44 6644.0 1.8455555555555556 7.986024 3.518355 1.226315
5832282 8 1 8 COMPLETED 0:0 01:21:56 4916.0 1.3655555555555556 7.370552 2.677889 0.944018
5832283 16 1 4 COMPLETED 0:0 01:47:37 6457.0 1.793611111111111 11.080608 3.733517 1.108727
5832288 16 1 8 COMPLETED 0:0 01:00:24 3624.0 1.0066666666666666 12.048396 3.610071 1.156689
5832295 16 1 9 COMPLETED 0:0 00:58:09 3489.0 0.9691666666666666 12.370292 4.686292 1.358672
5832301 16 1 10 COMPLETED 0:0 00:57:05 3425.0 0.9513888888888888 12.715072 4.47228 1.677858
5832305 16 1 11 COMPLETED 0:0 00:53:42 3222.0 0.895 11.753868 3.557895 1.407773
5832307 16 1 12 COMPLETED 0:0 00:49:50 2990.0 0.8305555555555556 12.28552 3.897502 1.122236