fastq-stats

gistfile1.txt

 fastq-stats 120613_I176_FCC0VM8ACXX_L8_SZAXPI009284-57_                      2.fq.gz
reads   180701702
len     100
len mean        100.0000
len stdev       0.0000
len min 100
phred   64
window-size     2000000
cycle-max       35
dups    6146153
%dup    3.4013
unique-dup seq  40799
min dup count   2
dup seq         1       31330   TAAACCCTAAACCCTAAACCCTAAACCCTAAACCC
dup seq         2       30610   TTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGG
dup seq         3       30287   AAACCCTAAACCCTAAACCCTAAACCCTAAACCCT
dup seq         4       29830   TTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGT
dup seq         5       27365   GTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGG
dup seq         6       26879   CTAAACCCTAAACCCTAAACCCTAAACCCTAAACC
dup seq         7       25261   CCTAAACCCTAAACCCTAAACCCTAAACCCTAAAC
dup seq         8       25138   TAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTT
dup seq         9       24872   GGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAG
dup seq         10      24743   AACCCTAAACCCTAAACCCTAAACCCTAAACCCTA
dup mean        151.6447
dup stddev      718.5337
qual min        2
qual max        41
qual mean       36.1070
qual stdev      6.5734
%A      31.7064
%C      18.0107
%G      18.2347
%T      31.7126
%N      0.3356
total bases     18070170200