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suvarchal/merge_mesh_diag.ipynb

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Generate FESOM2 mesh information for spatial subsets
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merge_mesh_diag.ipynb
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Use a `suvi_dataset_fixes` branch of pyfesom2 for this example, to upgrade your current installation simply use:\n",
"\n",
"`pip install --upgrade git+https://github.com/FESOM/pyfesom2@suvi_dataset_fixes`"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"ExecuteTime": {
"end_time": "2021-07-18T05:21:55.542240Z",
"start_time": "2021-07-18T05:21:53.676828Z"
}
},
"outputs": [],
"source": [
"import pyfesom2\n",
"import xarray as xr"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"ExecuteTime": {
"end_time": "2021-07-18T05:21:55.562436Z",
"start_time": "2021-07-18T05:21:55.543870Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"/home/suvarchal/AWI/triangulation_exps/pi-grid/pickle_mesh_py3_fesom2\n",
"The usepickle == True)\n",
"The pickle file for FESOM2 exists.\n",
"The mesh will be loaded from /home/suvarchal/AWI/triangulation_exps/pi-grid/pickle_mesh_py3_fesom2\n"
]
},
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"</style><pre class='xr-text-repr-fallback'>&lt;xarray.Dataset&gt;\n",
"Dimensions: (nelem: 5839, nod2: 3140, nz: 48, nz1: 47, three: 3)\n",
"Coordinates:\n",
" lon (nod2) float64 -60.6 -60.73 -62.15 -60.71 ... 127.2 122.0 124.5\n",
" lat (nod2) float64 74.28 73.91 74.05 74.63 ... -66.25 -66.73 -66.46\n",
" faces (nelem, three) uint32 0 11 1 1 11 9 ... 3134 3133 3139 3136 3137\n",
" * nz (nz) float64 0.0 5.0 10.0 20.0 ... 5.4e+03 5.65e+03 6e+03 6.25e+03\n",
" * nz1 (nz1) float64 2.5 7.5 15.0 25.0 ... 5.525e+03 5.825e+03 6.125e+03\n",
"Dimensions without coordinates: nelem, nod2, three\n",
"Data variables:\n",
" *empty*\n",
"Attributes:\n",
" Conventions: CF-1.7</pre><div class='xr-wrap' hidden><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-b7433c82-7570-4319-8c3e-3931edf45048' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-b7433c82-7570-4319-8c3e-3931edf45048' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span>nelem</span>: 5839</li><li><span>nod2</span>: 3140</li><li><span class='xr-has-index'>nz</span>: 48</li><li><span class='xr-has-index'>nz1</span>: 47</li><li><span>three</span>: 3</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-8fcd9b1b-175c-4373-8145-1bae845ac5f7' class='xr-section-summary-in' type='checkbox' checked><label for='section-8fcd9b1b-175c-4373-8145-1bae845ac5f7' class='xr-section-summary' >Coordinates: <span>(5)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>lon</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-60.6 -60.73 -62.15 ... 122.0 124.5</div><input id='attrs-0952fb5e-74e7-4cfb-9401-644d45d0d67a' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-0952fb5e-74e7-4cfb-9401-644d45d0d67a' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-902bb0d4-8c73-4bec-a1bd-9301e62685f6' class='xr-var-data-in' type='checkbox'><label for='data-902bb0d4-8c73-4bec-a1bd-9301e62685f6' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>longitude</dd><dt><span>units :</span></dt><dd>degrees_east</dd></dl></div><div class='xr-var-data'><pre>array([-60.6011834, -60.7301373, -62.1527131, ..., 127.2248174,\n",
" 121.9987517, 124.5142243])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>lat</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>74.28 73.91 74.05 ... -66.73 -66.46</div><input id='attrs-01d4521f-1412-4fa4-9fab-0f464efc0921' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-01d4521f-1412-4fa4-9fab-0f464efc0921' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-66647d0c-b854-429c-b28d-07cc59e7f5fd' class='xr-var-data-in' type='checkbox'><label for='data-66647d0c-b854-429c-b28d-07cc59e7f5fd' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>latitude</dd><dt><span>units :</span></dt><dd>degrees_north</dd></dl></div><div class='xr-var-data'><pre>array([ 74.28292396, 73.91183809, 74.05145544, ..., -66.24740724,\n",
" -66.73281897, -66.46269918])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>faces</span></div><div class='xr-var-dims'>(nelem, three)</div><div class='xr-var-dtype'>uint32</div><div class='xr-var-preview xr-preview'>0 11 1 1 11 ... 3133 3139 3136 3137</div><input id='attrs-8fa7901c-b6ef-4131-8425-ce6259b2f871' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-8fa7901c-b6ef-4131-8425-ce6259b2f871' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-093c16dc-6edf-41ab-9f4c-5ba23aec40d5' class='xr-var-data-in' type='checkbox'><label for='data-093c16dc-6edf-41ab-9f4c-5ba23aec40d5' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([[ 0, 11, 1],\n",
" [ 1, 11, 9],\n",
" [ 1, 9, 8],\n",
" ...,\n",
" [3138, 3135, 3139],\n",
" [3138, 3134, 3133],\n",
" [3139, 3136, 3137]], dtype=uint32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz</span></div><div class='xr-var-dims'>(nz)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.0 5.0 10.0 ... 6e+03 6.25e+03</div><input id='attrs-3dc1a330-b204-4d0d-a2a6-f8109b179e4e' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-3dc1a330-b204-4d0d-a2a6-f8109b179e4e' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-0879b819-788f-40d8-aa93-05fa4895046a' class='xr-var-data-in' type='checkbox'><label for='data-0879b819-788f-40d8-aa93-05fa4895046a' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth</dd><dt><span>units :</span></dt><dd>m</dd></dl></div><div class='xr-var-data'><pre>array([0.00e+00, 5.00e+00, 1.00e+01, 2.00e+01, 3.00e+01, 4.00e+01, 5.00e+01,\n",
" 6.00e+01, 7.00e+01, 8.00e+01, 9.00e+01, 1.00e+02, 1.15e+02, 1.35e+02,\n",
" 1.60e+02, 1.90e+02, 2.30e+02, 2.80e+02, 3.40e+02, 4.10e+02, 4.90e+02,\n",
" 5.80e+02, 6.80e+02, 7.90e+02, 9.10e+02, 1.04e+03, 1.18e+03, 1.33e+03,\n",
" 1.50e+03, 1.70e+03, 1.92e+03, 2.15e+03, 2.40e+03, 2.65e+03, 2.90e+03,\n",
" 3.15e+03, 3.40e+03, 3.65e+03, 3.90e+03, 4.15e+03, 4.40e+03, 4.65e+03,\n",
" 4.90e+03, 5.15e+03, 5.40e+03, 5.65e+03, 6.00e+03, 6.25e+03])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz1</span></div><div class='xr-var-dims'>(nz1)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>2.5 7.5 ... 5.825e+03 6.125e+03</div><input id='attrs-282c7822-4715-46e9-a0f5-6f247bf28c26' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-282c7822-4715-46e9-a0f5-6f247bf28c26' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-69828563-7092-4356-82ca-2092a01869db' class='xr-var-data-in' type='checkbox'><label for='data-69828563-7092-4356-82ca-2092a01869db' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth at half level</dd><dt><span>units :</span></dt><dd>m</dd><dt><span>positive :</span></dt><dd>down</dd><dt><span>axis :</span></dt><dd>Z</dd></dl></div><div class='xr-var-data'><pre>array([2.500e+00, 7.500e+00, 1.500e+01, 2.500e+01, 3.500e+01, 4.500e+01,\n",
" 5.500e+01, 6.500e+01, 7.500e+01, 8.500e+01, 9.500e+01, 1.075e+02,\n",
" 1.250e+02, 1.475e+02, 1.750e+02, 2.100e+02, 2.550e+02, 3.100e+02,\n",
" 3.750e+02, 4.500e+02, 5.350e+02, 6.300e+02, 7.350e+02, 8.500e+02,\n",
" 9.750e+02, 1.110e+03, 1.255e+03, 1.415e+03, 1.600e+03, 1.810e+03,\n",
" 2.035e+03, 2.275e+03, 2.525e+03, 2.775e+03, 3.025e+03, 3.275e+03,\n",
" 3.525e+03, 3.775e+03, 4.025e+03, 4.275e+03, 4.525e+03, 4.775e+03,\n",
" 5.025e+03, 5.275e+03, 5.525e+03, 5.825e+03, 6.125e+03])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-b13b1432-cd60-4893-97ab-8cdbd8a231a7' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-b13b1432-cd60-4893-97ab-8cdbd8a231a7' class='xr-section-summary' title='Expand/collapse section'>Data variables: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-b927c833-4034-4a87-8fab-27149d9367a1' class='xr-section-summary-in' type='checkbox' checked><label for='section-b927c833-4034-4a87-8fab-27149d9367a1' class='xr-section-summary' >Attributes: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'><dt><span>Conventions :</span></dt><dd>CF-1.7</dd></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (nelem: 5839, nod2: 3140, nz: 48, nz1: 47, three: 3)\n",
"Coordinates:\n",
" lon (nod2) float64 -60.6 -60.73 -62.15 -60.71 ... 127.2 122.0 124.5\n",
" lat (nod2) float64 74.28 73.91 74.05 74.63 ... -66.25 -66.73 -66.46\n",
" faces (nelem, three) uint32 0 11 1 1 11 9 ... 3134 3133 3139 3136 3137\n",
" * nz (nz) float64 0.0 5.0 10.0 20.0 ... 5.4e+03 5.65e+03 6e+03 6.25e+03\n",
" * nz1 (nz1) float64 2.5 7.5 15.0 25.0 ... 5.525e+03 5.825e+03 6.125e+03\n",
"Dimensions without coordinates: nelem, nod2, three\n",
"Data variables:\n",
" *empty*\n",
"Attributes:\n",
" Conventions: CF-1.7"
]
},
"execution_count": 2,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"# generate coordinate dataset from mesh info\n",
"pi_grid=pyfesom2.datasets.fesom_mesh_to_xr('./pi-grid') # path to grid dir containing nod2D.out ...\n",
"pi_grid"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"ExecuteTime": {
"end_time": "2021-07-18T05:21:55.577537Z",
"start_time": "2021-07-18T05:21:55.564014Z"
}
},
"outputs": [],
"source": [
"pi_mdiag=xr.open_dataset(\"pi-grid/fesom.mesh.diag.nc\") # path to mesh diag file"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"ExecuteTime": {
"end_time": "2021-07-18T05:21:55.590104Z",
"start_time": "2021-07-18T05:21:55.579098Z"
}
},
"outputs": [
{
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"\n",
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".xr-sections {\n",
" padding-left: 0 !important;\n",
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" grid-template-columns: 150px auto auto 1fr 20px 20px;\n",
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".xr-section-item {\n",
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"\n",
".xr-section-item input {\n",
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"\n",
".xr-section-item input + label {\n",
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".xr-section-item input:enabled + label {\n",
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"</style><pre class='xr-text-repr-fallback'>&lt;xarray.Dataset&gt;\n",
"Dimensions: (nelem: 5839, nod2: 3140, nz: 48)\n",
"Dimensions without coordinates: nelem, nod2, nz\n",
"Data variables:\n",
" nlevels_nod2D (nod2) int32 23 22 22 23 23 23 29 32 ... 29 20 29 29 23 21 22\n",
" nod_area (nod2, nz) float64 ...\n",
" elem_area (nelem) float64 7.572e+08 7.279e+08 ... 7.767e+09 6.581e+09</pre><div class='xr-wrap' hidden><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-15cb99dc-e6c9-4dba-8fc8-902c07fe449f' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-15cb99dc-e6c9-4dba-8fc8-902c07fe449f' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span>nelem</span>: 5839</li><li><span>nod2</span>: 3140</li><li><span>nz</span>: 48</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-3778f779-5248-47e4-a465-c310385ee025' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-3778f779-5248-47e4-a465-c310385ee025' class='xr-section-summary' title='Expand/collapse section'>Coordinates: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-7011e37e-1b42-49b9-ab70-6c4b21bfecaa' class='xr-section-summary-in' type='checkbox' checked><label for='section-7011e37e-1b42-49b9-ab70-6c4b21bfecaa' class='xr-section-summary' >Data variables: <span>(3)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>nlevels_nod2D</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>int32</div><div class='xr-var-preview xr-preview'>...</div><input id='attrs-0fb1bf86-525e-4ac3-8a53-d18db878015c' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-0fb1bf86-525e-4ac3-8a53-d18db878015c' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-d84015bb-bee1-4184-802c-73cb8a496cef' class='xr-var-data-in' type='checkbox'><label for='data-d84015bb-bee1-4184-802c-73cb8a496cef' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>number of levels below nodes</dd></dl></div><div class='xr-var-data'><pre>array([23, 22, 22, ..., 23, 21, 22], dtype=int32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>nod_area</span></div><div class='xr-var-dims'>(nod2, nz)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>...</div><input id='attrs-71b65b4c-0a10-4e13-9911-7a911fe99c34' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-71b65b4c-0a10-4e13-9911-7a911fe99c34' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-10d88cd5-a8c4-4e4f-9ab5-65dde80b5d73' class='xr-var-data-in' type='checkbox'><label for='data-10d88cd5-a8c4-4e4f-9ab5-65dde80b5d73' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>nodal areas</dd></dl></div><div class='xr-var-data'><pre>[150720 values with dtype=float64]</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>elem_area</span></div><div class='xr-var-dims'>(nelem)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>...</div><input id='attrs-b5a8d38c-fd72-4cff-a20a-db458435d933' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-b5a8d38c-fd72-4cff-a20a-db458435d933' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-bcb532e4-e49c-48fe-bee2-56c10f58fba3' class='xr-var-data-in' type='checkbox'><label for='data-bcb532e4-e49c-48fe-bee2-56c10f58fba3' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>element areas</dd></dl></div><div class='xr-var-data'><pre>array([7.572042e+08, 7.278958e+08, 9.803415e+08, ..., 6.775696e+09,\n",
" 7.766659e+09, 6.580706e+09])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-19864d42-53af-405d-af4d-14903a432eaa' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-19864d42-53af-405d-af4d-14903a432eaa' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (nelem: 5839, nod2: 3140, nz: 48)\n",
"Dimensions without coordinates: nelem, nod2, nz\n",
"Data variables:\n",
" nlevels_nod2D (nod2) int32 ...\n",
" nod_area (nod2, nz) float64 ...\n",
" elem_area (nelem) float64 ..."
]
},
"execution_count": 4,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"# because of recent changes to mesh diag file and reduce risk of errors just using necessary vars. \n",
"subset_vars = ['nlevels_nod2D', 'nod_area', 'elem_area']\n",
"partial_mesh_diag = pi_mdiag[subset_vars].rename({'elem_n':'nelem', 'nod_n':'nod2', 'nl':'nz'}) #, 'elem_n':'nelem'})\n",
"partial_mesh_diag['nod_area'] = partial_mesh_diag['nod_area'].T \n",
"partial_mesh_diag"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"ExecuteTime": {
"end_time": "2021-07-18T05:21:55.615308Z",
"start_time": "2021-07-18T05:21:55.591500Z"
}
},
"outputs": [
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"</style><pre class='xr-text-repr-fallback'>&lt;xarray.Dataset&gt;\n",
"Dimensions: (nelem: 5839, nod2: 3140, nz: 48, nz1: 47, three: 3)\n",
"Coordinates:\n",
" * nz (nz) float64 0.0 5.0 10.0 20.0 ... 5.65e+03 6e+03 6.25e+03\n",
" lon (nod2) float64 -60.6 -60.73 -62.15 ... 127.2 122.0 124.5\n",
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" * nz1 (nz1) float64 2.5 7.5 15.0 ... 5.525e+03 5.825e+03 6.125e+03\n",
"Dimensions without coordinates: nelem, nod2, three\n",
"Data variables:\n",
" nlevels_nod2D (nod2) int32 23 22 22 23 23 23 29 32 ... 29 20 29 29 23 21 22\n",
" nod_area (nod2, nz) float64 ...\n",
" elem_area (nelem) float64 7.572e+08 7.279e+08 ... 7.767e+09 6.581e+09\n",
"Attributes:\n",
" Conventions: CF-1.7</pre><div class='xr-wrap' hidden><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-13036dd4-02da-4151-aaab-61c2d2e3b615' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-13036dd4-02da-4151-aaab-61c2d2e3b615' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span>nelem</span>: 5839</li><li><span>nod2</span>: 3140</li><li><span class='xr-has-index'>nz</span>: 48</li><li><span class='xr-has-index'>nz1</span>: 47</li><li><span>three</span>: 3</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-de6a1b69-ea8d-4192-b79f-69f63613f7ce' class='xr-section-summary-in' type='checkbox' checked><label for='section-de6a1b69-ea8d-4192-b79f-69f63613f7ce' class='xr-section-summary' >Coordinates: <span>(5)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz</span></div><div class='xr-var-dims'>(nz)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.0 5.0 10.0 ... 6e+03 6.25e+03</div><input id='attrs-cfeb6ca4-4dc0-453c-addc-ad1baa8dc9c7' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-cfeb6ca4-4dc0-453c-addc-ad1baa8dc9c7' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-80a27a87-34ff-40d1-be4f-3d61461e731b' class='xr-var-data-in' type='checkbox'><label for='data-80a27a87-34ff-40d1-be4f-3d61461e731b' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth</dd><dt><span>units :</span></dt><dd>m</dd></dl></div><div class='xr-var-data'><pre>array([0.00e+00, 5.00e+00, 1.00e+01, 2.00e+01, 3.00e+01, 4.00e+01, 5.00e+01,\n",
" 6.00e+01, 7.00e+01, 8.00e+01, 9.00e+01, 1.00e+02, 1.15e+02, 1.35e+02,\n",
" 1.60e+02, 1.90e+02, 2.30e+02, 2.80e+02, 3.40e+02, 4.10e+02, 4.90e+02,\n",
" 5.80e+02, 6.80e+02, 7.90e+02, 9.10e+02, 1.04e+03, 1.18e+03, 1.33e+03,\n",
" 1.50e+03, 1.70e+03, 1.92e+03, 2.15e+03, 2.40e+03, 2.65e+03, 2.90e+03,\n",
" 3.15e+03, 3.40e+03, 3.65e+03, 3.90e+03, 4.15e+03, 4.40e+03, 4.65e+03,\n",
" 4.90e+03, 5.15e+03, 5.40e+03, 5.65e+03, 6.00e+03, 6.25e+03])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>lon</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-60.6 -60.73 -62.15 ... 122.0 124.5</div><input id='attrs-972cce79-1f9a-4cfc-86f1-41b453b39808' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-972cce79-1f9a-4cfc-86f1-41b453b39808' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-f8f0f1d0-5c15-4610-9dc3-a686cc7d47ea' class='xr-var-data-in' type='checkbox'><label for='data-f8f0f1d0-5c15-4610-9dc3-a686cc7d47ea' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>longitude</dd><dt><span>units :</span></dt><dd>degrees_east</dd></dl></div><div class='xr-var-data'><pre>array([-60.6011834, -60.7301373, -62.1527131, ..., 127.2248174,\n",
" 121.9987517, 124.5142243])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>lat</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>74.28 73.91 74.05 ... -66.73 -66.46</div><input id='attrs-63bd9d03-a495-4d2a-babb-8a571159e92d' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-63bd9d03-a495-4d2a-babb-8a571159e92d' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-9811d484-64bb-4896-8df1-f2ebe5bacdde' class='xr-var-data-in' type='checkbox'><label for='data-9811d484-64bb-4896-8df1-f2ebe5bacdde' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>latitude</dd><dt><span>units :</span></dt><dd>degrees_north</dd></dl></div><div class='xr-var-data'><pre>array([ 74.28292396, 73.91183809, 74.05145544, ..., -66.24740724,\n",
" -66.73281897, -66.46269918])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>faces</span></div><div class='xr-var-dims'>(nelem, three)</div><div class='xr-var-dtype'>uint32</div><div class='xr-var-preview xr-preview'>0 11 1 1 11 ... 3133 3139 3136 3137</div><input id='attrs-20b72dc7-9736-4153-80fd-3ffa7c70b5e4' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-20b72dc7-9736-4153-80fd-3ffa7c70b5e4' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-93b617d2-670d-4cb2-98c7-6592d2af3521' class='xr-var-data-in' type='checkbox'><label for='data-93b617d2-670d-4cb2-98c7-6592d2af3521' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([[ 0, 11, 1],\n",
" [ 1, 11, 9],\n",
" [ 1, 9, 8],\n",
" ...,\n",
" [3138, 3135, 3139],\n",
" [3138, 3134, 3133],\n",
" [3139, 3136, 3137]], dtype=uint32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz1</span></div><div class='xr-var-dims'>(nz1)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>2.5 7.5 ... 5.825e+03 6.125e+03</div><input id='attrs-07e6dc23-0cdd-4bbc-9338-6b943c96108e' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-07e6dc23-0cdd-4bbc-9338-6b943c96108e' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-7c8e3d46-5bae-45d1-9387-16b2655e2edf' class='xr-var-data-in' type='checkbox'><label for='data-7c8e3d46-5bae-45d1-9387-16b2655e2edf' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth at half level</dd><dt><span>units :</span></dt><dd>m</dd><dt><span>positive :</span></dt><dd>down</dd><dt><span>axis :</span></dt><dd>Z</dd></dl></div><div class='xr-var-data'><pre>array([2.500e+00, 7.500e+00, 1.500e+01, 2.500e+01, 3.500e+01, 4.500e+01,\n",
" 5.500e+01, 6.500e+01, 7.500e+01, 8.500e+01, 9.500e+01, 1.075e+02,\n",
" 1.250e+02, 1.475e+02, 1.750e+02, 2.100e+02, 2.550e+02, 3.100e+02,\n",
" 3.750e+02, 4.500e+02, 5.350e+02, 6.300e+02, 7.350e+02, 8.500e+02,\n",
" 9.750e+02, 1.110e+03, 1.255e+03, 1.415e+03, 1.600e+03, 1.810e+03,\n",
" 2.035e+03, 2.275e+03, 2.525e+03, 2.775e+03, 3.025e+03, 3.275e+03,\n",
" 3.525e+03, 3.775e+03, 4.025e+03, 4.275e+03, 4.525e+03, 4.775e+03,\n",
" 5.025e+03, 5.275e+03, 5.525e+03, 5.825e+03, 6.125e+03])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-e42cf1d0-2cb6-4af5-9925-5b52050f73c0' class='xr-section-summary-in' type='checkbox' checked><label for='section-e42cf1d0-2cb6-4af5-9925-5b52050f73c0' class='xr-section-summary' >Data variables: <span>(3)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>nlevels_nod2D</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>int32</div><div class='xr-var-preview xr-preview'>23 22 22 23 23 ... 29 29 23 21 22</div><input id='attrs-11a574b7-d22c-4c5f-9fd0-6e670f1e6f4f' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-11a574b7-d22c-4c5f-9fd0-6e670f1e6f4f' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-f9f13396-747b-4334-93a3-97eae9e906b5' class='xr-var-data-in' type='checkbox'><label for='data-f9f13396-747b-4334-93a3-97eae9e906b5' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>number of levels below nodes</dd></dl></div><div class='xr-var-data'><pre>array([23, 22, 22, ..., 23, 21, 22], dtype=int32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>nod_area</span></div><div class='xr-var-dims'>(nod2, nz)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>...</div><input id='attrs-8ebb6a4b-8637-4074-88e1-fbee741a03a9' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-8ebb6a4b-8637-4074-88e1-fbee741a03a9' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-05deb8df-d146-4607-a553-175fd65cea6d' class='xr-var-data-in' type='checkbox'><label for='data-05deb8df-d146-4607-a553-175fd65cea6d' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>nodal areas</dd></dl></div><div class='xr-var-data'><pre>[150720 values with dtype=float64]</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>elem_area</span></div><div class='xr-var-dims'>(nelem)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>7.572e+08 7.279e+08 ... 6.581e+09</div><input id='attrs-f58d7c7b-5990-4e7b-b5de-d07b6eede491' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-f58d7c7b-5990-4e7b-b5de-d07b6eede491' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-a43adfc3-9c78-42a7-a34e-8f037d2141cf' class='xr-var-data-in' type='checkbox'><label for='data-a43adfc3-9c78-42a7-a34e-8f037d2141cf' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>element areas</dd></dl></div><div class='xr-var-data'><pre>array([7.572042e+08, 7.278958e+08, 9.803415e+08, ..., 6.775696e+09,\n",
" 7.766659e+09, 6.580706e+09])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-8b74f0c7-a94e-4577-96cd-01961d94db07' class='xr-section-summary-in' type='checkbox' checked><label for='section-8b74f0c7-a94e-4577-96cd-01961d94db07' class='xr-section-summary' >Attributes: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'><dt><span>Conventions :</span></dt><dd>CF-1.7</dd></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (nelem: 5839, nod2: 3140, nz: 48, nz1: 47, three: 3)\n",
"Coordinates:\n",
" * nz (nz) float64 0.0 5.0 10.0 20.0 ... 5.65e+03 6e+03 6.25e+03\n",
" lon (nod2) float64 -60.6 -60.73 -62.15 ... 127.2 122.0 124.5\n",
" lat (nod2) float64 74.28 73.91 74.05 ... -66.25 -66.73 -66.46\n",
" faces (nelem, three) uint32 0 11 1 1 11 ... 3133 3139 3136 3137\n",
" * nz1 (nz1) float64 2.5 7.5 15.0 ... 5.525e+03 5.825e+03 6.125e+03\n",
"Dimensions without coordinates: nelem, nod2, three\n",
"Data variables:\n",
" nlevels_nod2D (nod2) int32 23 22 22 23 23 23 29 32 ... 29 20 29 29 23 21 22\n",
" nod_area (nod2, nz) float64 ...\n",
" elem_area (nelem) float64 7.572e+08 7.279e+08 ... 7.767e+09 6.581e+09\n",
"Attributes:\n",
" Conventions: CF-1.7"
]
},
"execution_count": 5,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"# merge coords data with subset vars of mesh diag\n",
"merged_grid_dataset = xr.merge([pi_grid, partial_mesh_diag], compat='override')\n",
"merged_grid_dataset"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {
"ExecuteTime": {
"end_time": "2021-07-18T05:21:55.744465Z",
"start_time": "2021-07-18T05:21:55.616649Z"
}
},
"outputs": [
{
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"\n",
".xr-section-summary-in:checked + label > span {\n",
" display: none;\n",
"}\n",
"\n",
".xr-section-summary,\n",
".xr-section-inline-details {\n",
" padding-top: 4px;\n",
" padding-bottom: 4px;\n",
"}\n",
"\n",
".xr-section-inline-details {\n",
" grid-column: 2 / -1;\n",
"}\n",
"\n",
".xr-section-details {\n",
" display: none;\n",
" grid-column: 1 / -1;\n",
" margin-bottom: 5px;\n",
"}\n",
"\n",
".xr-section-summary-in:checked ~ .xr-section-details {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-array-wrap {\n",
" grid-column: 1 / -1;\n",
" display: grid;\n",
" grid-template-columns: 20px auto;\n",
"}\n",
"\n",
".xr-array-wrap > label {\n",
" grid-column: 1;\n",
" vertical-align: top;\n",
"}\n",
"\n",
".xr-preview {\n",
" color: var(--xr-font-color3);\n",
"}\n",
"\n",
".xr-array-preview,\n",
".xr-array-data {\n",
" padding: 0 5px !important;\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-array-data,\n",
".xr-array-in:checked ~ .xr-array-preview {\n",
" display: none;\n",
"}\n",
"\n",
".xr-array-in:checked ~ .xr-array-data,\n",
".xr-array-preview {\n",
" display: inline-block;\n",
"}\n",
"\n",
".xr-dim-list {\n",
" display: inline-block !important;\n",
" list-style: none;\n",
" padding: 0 !important;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list li {\n",
" display: inline-block;\n",
" padding: 0;\n",
" margin: 0;\n",
"}\n",
"\n",
".xr-dim-list:before {\n",
" content: '(';\n",
"}\n",
"\n",
".xr-dim-list:after {\n",
" content: ')';\n",
"}\n",
"\n",
".xr-dim-list li:not(:last-child):after {\n",
" content: ',';\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-has-index {\n",
" font-weight: bold;\n",
"}\n",
"\n",
".xr-var-list,\n",
".xr-var-item {\n",
" display: contents;\n",
"}\n",
"\n",
".xr-var-item > div,\n",
".xr-var-item label,\n",
".xr-var-item > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-even);\n",
" margin-bottom: 0;\n",
"}\n",
"\n",
".xr-var-item > .xr-var-name:hover span {\n",
" padding-right: 5px;\n",
"}\n",
"\n",
".xr-var-list > li:nth-child(odd) > div,\n",
".xr-var-list > li:nth-child(odd) > label,\n",
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n",
" background-color: var(--xr-background-color-row-odd);\n",
"}\n",
"\n",
".xr-var-name {\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-var-dims {\n",
" grid-column: 2;\n",
"}\n",
"\n",
".xr-var-dtype {\n",
" grid-column: 3;\n",
" text-align: right;\n",
" color: var(--xr-font-color2);\n",
"}\n",
"\n",
".xr-var-preview {\n",
" grid-column: 4;\n",
"}\n",
"\n",
".xr-var-name,\n",
".xr-var-dims,\n",
".xr-var-dtype,\n",
".xr-preview,\n",
".xr-attrs dt {\n",
" white-space: nowrap;\n",
" overflow: hidden;\n",
" text-overflow: ellipsis;\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-var-name:hover,\n",
".xr-var-dims:hover,\n",
".xr-var-dtype:hover,\n",
".xr-attrs dt:hover {\n",
" overflow: visible;\n",
" width: auto;\n",
" z-index: 1;\n",
"}\n",
"\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" display: none;\n",
" background-color: var(--xr-background-color) !important;\n",
" padding-bottom: 5px !important;\n",
"}\n",
"\n",
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n",
".xr-var-data-in:checked ~ .xr-var-data {\n",
" display: block;\n",
"}\n",
"\n",
".xr-var-data > table {\n",
" float: right;\n",
"}\n",
"\n",
".xr-var-name span,\n",
".xr-var-data,\n",
".xr-attrs {\n",
" padding-left: 25px !important;\n",
"}\n",
"\n",
".xr-attrs,\n",
".xr-var-attrs,\n",
".xr-var-data {\n",
" grid-column: 1 / -1;\n",
"}\n",
"\n",
"dl.xr-attrs {\n",
" padding: 0;\n",
" margin: 0;\n",
" display: grid;\n",
" grid-template-columns: 125px auto;\n",
"}\n",
"\n",
".xr-attrs dt,\n",
".xr-attrs dd {\n",
" padding: 0;\n",
" margin: 0;\n",
" float: left;\n",
" padding-right: 10px;\n",
" width: auto;\n",
"}\n",
"\n",
".xr-attrs dt {\n",
" font-weight: normal;\n",
" grid-column: 1;\n",
"}\n",
"\n",
".xr-attrs dt:hover span {\n",
" display: inline-block;\n",
" background: var(--xr-background-color);\n",
" padding-right: 10px;\n",
"}\n",
"\n",
".xr-attrs dd {\n",
" grid-column: 2;\n",
" white-space: pre-wrap;\n",
" word-break: break-all;\n",
"}\n",
"\n",
".xr-icon-database,\n",
".xr-icon-file-text2 {\n",
" display: inline-block;\n",
" vertical-align: middle;\n",
" width: 1em;\n",
" height: 1.5em !important;\n",
" stroke-width: 0;\n",
" stroke: currentColor;\n",
" fill: currentColor;\n",
"}\n",
"</style><pre class='xr-text-repr-fallback'>&lt;xarray.Dataset&gt;\n",
"Dimensions: (nelem: 1411, nod2: 788, nz: 48, nz1: 47, three: 3)\n",
"Coordinates:\n",
" * nz (nz) float64 0.0 5.0 10.0 20.0 ... 5.65e+03 6e+03 6.25e+03\n",
" lon (nod2) float64 -60.6 -60.73 -62.15 ... -24.18 -51.75 -30.51\n",
" lat (nod2) float64 74.28 73.91 74.05 74.63 ... 60.14 89.4 60.24\n",
" * nz1 (nz1) float64 2.5 7.5 15.0 ... 5.525e+03 5.825e+03 6.125e+03\n",
"Dimensions without coordinates: nelem, nod2, three\n",
"Data variables:\n",
" nlevels_nod2D (nod2) int32 23 22 22 23 23 23 29 32 ... 34 35 31 31 33 38 33\n",
" nod_area (nod2, nz) float64 ...\n",
" elem_area (nelem) float64 7.572e+08 7.279e+08 ... 8.252e+09 1.068e+10\n",
" faces (nelem, three) int64 0 11 1 1 11 9 ... 765 767 787 779 783\n",
"Attributes:\n",
" Conventions: CF-1.7</pre><div class='xr-wrap' hidden><div class='xr-header'><div class='xr-obj-type'>xarray.Dataset</div></div><ul class='xr-sections'><li class='xr-section-item'><input id='section-5c9ce5f4-f0b8-4bf7-8727-8e0544fc47d3' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-5c9ce5f4-f0b8-4bf7-8727-8e0544fc47d3' class='xr-section-summary' title='Expand/collapse section'>Dimensions:</label><div class='xr-section-inline-details'><ul class='xr-dim-list'><li><span>nelem</span>: 1411</li><li><span>nod2</span>: 788</li><li><span class='xr-has-index'>nz</span>: 48</li><li><span class='xr-has-index'>nz1</span>: 47</li><li><span>three</span>: 3</li></ul></div><div class='xr-section-details'></div></li><li class='xr-section-item'><input id='section-8dd8e164-d6d1-4525-b7ef-c038f1578abe' class='xr-section-summary-in' type='checkbox' checked><label for='section-8dd8e164-d6d1-4525-b7ef-c038f1578abe' class='xr-section-summary' >Coordinates: <span>(4)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz</span></div><div class='xr-var-dims'>(nz)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>0.0 5.0 10.0 ... 6e+03 6.25e+03</div><input id='attrs-5d8e5475-751b-40af-bed1-143f1b82b21f' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-5d8e5475-751b-40af-bed1-143f1b82b21f' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-bc10e235-5e6b-4098-8c94-39371499b1b2' class='xr-var-data-in' type='checkbox'><label for='data-bc10e235-5e6b-4098-8c94-39371499b1b2' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth</dd><dt><span>units :</span></dt><dd>m</dd></dl></div><div class='xr-var-data'><pre>array([0.00e+00, 5.00e+00, 1.00e+01, 2.00e+01, 3.00e+01, 4.00e+01, 5.00e+01,\n",
" 6.00e+01, 7.00e+01, 8.00e+01, 9.00e+01, 1.00e+02, 1.15e+02, 1.35e+02,\n",
" 1.60e+02, 1.90e+02, 2.30e+02, 2.80e+02, 3.40e+02, 4.10e+02, 4.90e+02,\n",
" 5.80e+02, 6.80e+02, 7.90e+02, 9.10e+02, 1.04e+03, 1.18e+03, 1.33e+03,\n",
" 1.50e+03, 1.70e+03, 1.92e+03, 2.15e+03, 2.40e+03, 2.65e+03, 2.90e+03,\n",
" 3.15e+03, 3.40e+03, 3.65e+03, 3.90e+03, 4.15e+03, 4.40e+03, 4.65e+03,\n",
" 4.90e+03, 5.15e+03, 5.40e+03, 5.65e+03, 6.00e+03, 6.25e+03])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>lon</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>-60.6 -60.73 ... -51.75 -30.51</div><input id='attrs-3ab82e63-af56-483b-9fe8-96d4c0b752cd' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-3ab82e63-af56-483b-9fe8-96d4c0b752cd' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-2973e1aa-1682-44ae-bb40-b0b80add3cc1' class='xr-var-data-in' type='checkbox'><label for='data-2973e1aa-1682-44ae-bb40-b0b80add3cc1' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>longitude</dd><dt><span>units :</span></dt><dd>degrees_east</dd></dl></div><div class='xr-var-data'><pre>array([-60.6011834, -60.7301373, -62.1527131, -60.7111357, -62.0335574,\n",
" -59.9736546, -63.6794846, -65.5532533, -61.7425291, -59.9392366,\n",
" -59.4011468, -59.4682313, -58.2107582, -63.8723102, -65.8697378,\n",
" -61.481425 , -63.1080387, -60.7387397, -58.7615517, -61.7898189,\n",
" -63.4757471, -67.7643045, -67.2611287, -65.2572298, -60.3321748,\n",
" -60.0999984, -59.1322154, -58.6796624, -57.6832805, -61.3388917,\n",
" -17.5874553, -19.3452906, -20.193573 , -21.360015 , -22.0731905,\n",
" -17.3615116, -19.3179929, -69.9981337, -68.3272769, -70.5321889,\n",
" -64.9493073, -66.9079393, -62.4986667, -64.1209248, -61.6927496,\n",
" -60.2271156, -63.313816 , -62.1683447, -69.3572198, -71.1274434,\n",
" -67.3222202, -69.0691111, -65.3302779, -61.1782488, -59.7324034,\n",
" -58.8700492, -58.7942475, -57.9515235, -57.0728499, -60.242282 ,\n",
" -22.18846 , -15.864382 , -16.1900108, -17.5943849, -16.4992691,\n",
" -18.3352937, -19.1510128, -19.884127 , -20.3914312, -20.4190573,\n",
" -13.6900725, -15.5560981, -15.1247163, -17.036157 , -19.2260797,\n",
" -72.1317502, -73.1418277, -72.5764595, -70.9305796, -69.0667892,\n",
" -65.9487421, -67.7255644, -63.3247203, -65.1578192, -62.3021101,\n",
" -64.035559 , -63.0665036, -67.1972495, -70.993713 , -69.2346547,\n",
" -73.7066298, -65.9096723, -61.9682947, -60.1743691, -59.5249251,\n",
" -58.6420308, -57.6046824, -57.7521788, -56.4039398, -58.7334756,\n",
"...\n",
" -37.5788809, -29.8638878, -31.9190301, -28.7478505, -26.7165052,\n",
" -51.3093826, -48.6928923, -42.0170874, -24.584036 , -20.4223153,\n",
" -22.5932098, -18.0637806, -15.2591444, -13.0685335, 4.8099114,\n",
" -0.7631325, 0.9536942, -10.5742171, -3.4522832, -6.2258395,\n",
" -8.0254895, 56.0027079, 59.2753388, 59.90681 , 22.5450385,\n",
" 35.1172268, 56.5555749, 49.1058152, -32.3346845, -20.6902288,\n",
" 9.8820769, -4.6172846, -69.2402742, -61.0198742, -50.2812027,\n",
" -42.9953178, -76.9252973, -33.2449506, -38.9110071, -40.5337178,\n",
" -35.2362225, -36.9041204, -30.719841 , -28.1970493, -26.1170894,\n",
" -48.9989769, -45.88116 , -42.6665636, -24.4799837, -20.289292 ,\n",
" -22.3403919, -16.5460068, -18.4025409, -14.4763194, -12.2394067,\n",
" -1.8526408, -9.8394779, -4.7989946, -7.1539795, 27.2715165,\n",
" 46.5507785, -31.4846808, -12.6486745, 9.8917942, -76.7401409,\n",
" -69.2617411, -57.0933879, -49.3665172, -32.5326156, -39.9943438,\n",
" -38.4339414, -34.539255 , -36.4598513, -29.8054757, -26.8445248,\n",
" -24.5253799, -20.3908207, -22.4971617, -16.2901591, -18.5459302,\n",
" -13.845121 , -3.0893386, -8.8690158, -5.6877627, 35.7109276,\n",
" -32.3258812, 4.8609709, -70.2155904, -65.6854508, -31.716164 ,\n",
" -38.2559088, -33.8313733, -36.1242058, -28.7357179, -26.3149615,\n",
" -24.1775859, -51.7460792, -30.5110981])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>lat</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>74.28 73.91 74.05 ... 89.4 60.24</div><input id='attrs-23c44e0d-dc2e-4630-af83-b644205fd030' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-23c44e0d-dc2e-4630-af83-b644205fd030' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-ef185cc7-3e73-4ebd-a1f9-faa9d0905d0e' class='xr-var-data-in' type='checkbox'><label for='data-ef185cc7-3e73-4ebd-a1f9-faa9d0905d0e' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>latitude</dd><dt><span>units :</span></dt><dd>degrees_north</dd></dl></div><div class='xr-var-data'><pre>array([74.28292396, 73.91183809, 74.05145544, 74.62911128, 74.4895389 ,\n",
" 74.90949094, 73.74144053, 73.51748871, 73.52045373, 73.66892311,\n",
" 74.46243486, 74.06723304, 74.81511452, 74.28270565, 74.10521378,\n",
" 74.91340459, 74.76179413, 75.22060446, 75.35363504, 72.94770914,\n",
" 73.15971162, 73.69173144, 73.09713373, 72.87428151, 73.25685914,\n",
" 72.82708439, 73.40406999, 73.77589969, 74.25984227, 72.41936723,\n",
" 74.63089965, 74.23311831, 73.72578432, 73.3059939 , 72.83643713,\n",
" 75.13751959, 74.81065658, 73.77066415, 74.23273244, 74.30679702,\n",
" 74.66868627, 74.59711365, 75.13111528, 75.09380071, 75.41187693,\n",
" 75.81257499, 72.49967638, 71.9420773 , 73.19996794, 73.27299699,\n",
" 72.52170963, 72.70977309, 72.31076936, 71.45116509, 72.35909313,\n",
" 73.03400257, 72.64376036, 73.31552534, 73.73866118, 71.91638548,\n",
" 72.27578009, 75.31507733, 74.86862726, 74.11558163, 74.42436041,\n",
" 73.6849668 , 73.26135666, 72.91346502, 72.53918457, 72.14103337,\n",
" 75.98437592, 75.78140956, 76.22642993, 75.62681974, 75.41733055,\n",
" 73.82952712, 73.2540275 , 74.35822597, 74.84709621, 74.77343895,\n",
" 75.04642712, 75.06933191, 75.46930746, 75.41815407, 76.00455627,\n",
" 71.87330733, 71.36277617, 72.03616325, 72.65325509, 72.18809402,\n",
" 72.28820793, 71.74121825, 70.91464265, 70.9265789 , 71.40145391,\n",
" 72.15002293, 72.82347185, 72.42072686, 73.13169965, 71.76648755,\n",
"...\n",
" 62.8906219 , 64.49359861, 64.27334762, 63.87144212, 63.79679448,\n",
" 60.94950864, 61.17765299, 62.66123191, 63.58932147, 63.61723904,\n",
" 63.08808256, 62.71689526, 62.60102842, 62.3530608 , 61.12995447,\n",
" 62.33253145, 60.83547578, 62.16464721, 62.47976482, 62.72909127,\n",
" 62.05481102, 78.85885626, 80.49311005, 74.63928802, 84.28898835,\n",
" 83.93404805, 82.33621486, 83.64865418, 85.34304791, 85.66442538,\n",
" 84.93091088, 85.58104524, 84.47956847, 84.9043985 , 85.07055782,\n",
" 85.68939339, 83.9631273 , 63.53910343, 62.23144497, 61.6596236 ,\n",
" 62.88424494, 62.14166562, 63.47221435, 63.03721688, 63.03301261,\n",
" 60.04094898, 60.48664638, 60.9653997 , 62.54564952, 62.33260488,\n",
" 62.05045674, 61.83846438, 61.5432462 , 61.48300546, 61.1839886 ,\n",
" 61.23860301, 61.05045649, 61.42474019, 60.97610999, 85.4065995 ,\n",
" 85.13986682, 86.32771732, 86.6446852 , 86.29844314, 84.76042685,\n",
" 85.36910047, 85.73798293, 86.62068389, 62.65344373, 60.68410014,\n",
" 61.35705215, 61.93936276, 61.16656112, 62.4206587 , 62.14331346,\n",
" 61.61408647, 61.17321834, 61.00682615, 60.65123539, 60.26446165,\n",
" 60.14664759, 60.11279718, 60.06548562, 60.06104169, 86.87573279,\n",
" 87.64104411, 87.89096529, 86.41238905, 87.61681574, 61.52783758,\n",
" 60.31101264, 60.76363751, 60.04588505, 61.29508754, 60.89727597,\n",
" 60.14122613, 89.40483957, 60.2375343 ])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span class='xr-has-index'>nz1</span></div><div class='xr-var-dims'>(nz1)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>2.5 7.5 ... 5.825e+03 6.125e+03</div><input id='attrs-9c7b33ea-bdcf-4b28-802e-c1da4faeca33' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-9c7b33ea-bdcf-4b28-802e-c1da4faeca33' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-cb71e9cb-1940-46f2-be92-d028da593035' class='xr-var-data-in' type='checkbox'><label for='data-cb71e9cb-1940-46f2-be92-d028da593035' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>depth at half level</dd><dt><span>units :</span></dt><dd>m</dd><dt><span>positive :</span></dt><dd>down</dd><dt><span>axis :</span></dt><dd>Z</dd></dl></div><div class='xr-var-data'><pre>array([2.500e+00, 7.500e+00, 1.500e+01, 2.500e+01, 3.500e+01, 4.500e+01,\n",
" 5.500e+01, 6.500e+01, 7.500e+01, 8.500e+01, 9.500e+01, 1.075e+02,\n",
" 1.250e+02, 1.475e+02, 1.750e+02, 2.100e+02, 2.550e+02, 3.100e+02,\n",
" 3.750e+02, 4.500e+02, 5.350e+02, 6.300e+02, 7.350e+02, 8.500e+02,\n",
" 9.750e+02, 1.110e+03, 1.255e+03, 1.415e+03, 1.600e+03, 1.810e+03,\n",
" 2.035e+03, 2.275e+03, 2.525e+03, 2.775e+03, 3.025e+03, 3.275e+03,\n",
" 3.525e+03, 3.775e+03, 4.025e+03, 4.275e+03, 4.525e+03, 4.775e+03,\n",
" 5.025e+03, 5.275e+03, 5.525e+03, 5.825e+03, 6.125e+03])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-d0ec6062-f55f-45f5-9489-1964d5844f8f' class='xr-section-summary-in' type='checkbox' checked><label for='section-d0ec6062-f55f-45f5-9489-1964d5844f8f' class='xr-section-summary' >Data variables: <span>(4)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'><li class='xr-var-item'><div class='xr-var-name'><span>nlevels_nod2D</span></div><div class='xr-var-dims'>(nod2)</div><div class='xr-var-dtype'>int32</div><div class='xr-var-preview xr-preview'>23 22 22 23 23 ... 31 31 33 38 33</div><input id='attrs-8581aee8-c94b-499d-ae4e-90e1ff675819' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-8581aee8-c94b-499d-ae4e-90e1ff675819' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-2e9c40eb-050f-43af-b807-3c8a3bace3ba' class='xr-var-data-in' type='checkbox'><label for='data-2e9c40eb-050f-43af-b807-3c8a3bace3ba' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>number of levels below nodes</dd></dl></div><div class='xr-var-data'><pre>array([23, 22, 22, ..., 33, 38, 33], dtype=int32)</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>nod_area</span></div><div class='xr-var-dims'>(nod2, nz)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>...</div><input id='attrs-7d9485c3-aff8-4eed-aed1-128f202acbda' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-7d9485c3-aff8-4eed-aed1-128f202acbda' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-191aeff2-f8f5-48e7-90c7-d67672b59b17' class='xr-var-data-in' type='checkbox'><label for='data-191aeff2-f8f5-48e7-90c7-d67672b59b17' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>nodal areas</dd></dl></div><div class='xr-var-data'><pre>array([[1.685419e+09, 1.685419e+09, 1.685419e+09, ..., 0.000000e+00,\n",
" 0.000000e+00, 0.000000e+00],\n",
" [1.531237e+09, 1.531237e+09, 1.531237e+09, ..., 0.000000e+00,\n",
" 0.000000e+00, 0.000000e+00],\n",
" [2.555195e+09, 2.555195e+09, 2.555195e+09, ..., 0.000000e+00,\n",
" 0.000000e+00, 0.000000e+00],\n",
" ...,\n",
" [2.203654e+10, 2.203654e+10, 2.203654e+10, ..., 0.000000e+00,\n",
" 0.000000e+00, 0.000000e+00],\n",
" [4.312251e+10, 4.312251e+10, 4.312251e+10, ..., 0.000000e+00,\n",
" 0.000000e+00, 0.000000e+00],\n",
" [2.591320e+10, 2.591320e+10, 2.591320e+10, ..., 0.000000e+00,\n",
" 0.000000e+00, 0.000000e+00]])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>elem_area</span></div><div class='xr-var-dims'>(nelem)</div><div class='xr-var-dtype'>float64</div><div class='xr-var-preview xr-preview'>7.572e+08 7.279e+08 ... 1.068e+10</div><input id='attrs-e3da6ce2-4ef1-49c3-88f2-5dc18a54141c' class='xr-var-attrs-in' type='checkbox' ><label for='attrs-e3da6ce2-4ef1-49c3-88f2-5dc18a54141c' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-ecd07806-44fd-4f94-bece-fa2002b0c389' class='xr-var-data-in' type='checkbox'><label for='data-ecd07806-44fd-4f94-bece-fa2002b0c389' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'><dt><span>long_name :</span></dt><dd>element areas</dd></dl></div><div class='xr-var-data'><pre>array([7.572042e+08, 7.278958e+08, 9.803415e+08, ..., 7.615236e+09,\n",
" 8.252081e+09, 1.067757e+10])</pre></div></li><li class='xr-var-item'><div class='xr-var-name'><span>faces</span></div><div class='xr-var-dims'>(nelem, three)</div><div class='xr-var-dtype'>int64</div><div class='xr-var-preview xr-preview'>0 11 1 1 11 ... 765 767 787 779 783</div><input id='attrs-a9d46cf9-140a-4fc5-90c9-c7a3b6e0445c' class='xr-var-attrs-in' type='checkbox' disabled><label for='attrs-a9d46cf9-140a-4fc5-90c9-c7a3b6e0445c' title='Show/Hide attributes'><svg class='icon xr-icon-file-text2'><use xlink:href='#icon-file-text2'></use></svg></label><input id='data-6185816f-99a3-4c6e-b2fc-4df86a03f509' class='xr-var-data-in' type='checkbox'><label for='data-6185816f-99a3-4c6e-b2fc-4df86a03f509' title='Show/Hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-var-attrs'><dl class='xr-attrs'></dl></div><div class='xr-var-data'><pre>array([[ 0, 11, 1],\n",
" [ 1, 11, 9],\n",
" [ 1, 9, 8],\n",
" ...,\n",
" [784, 764, 765],\n",
" [785, 765, 767],\n",
" [787, 779, 783]])</pre></div></li></ul></div></li><li class='xr-section-item'><input id='section-faa04964-4d39-44c8-b0fd-1425acf23acd' class='xr-section-summary-in' type='checkbox' checked><label for='section-faa04964-4d39-44c8-b0fd-1425acf23acd' class='xr-section-summary' >Attributes: <span>(1)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'><dt><span>Conventions :</span></dt><dd>CF-1.7</dd></dl></div></li></ul></div></div>"
],
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (nelem: 1411, nod2: 788, nz: 48, nz1: 47, three: 3)\n",
"Coordinates:\n",
" * nz (nz) float64 0.0 5.0 10.0 20.0 ... 5.65e+03 6e+03 6.25e+03\n",
" lon (nod2) float64 -60.6 -60.73 -62.15 ... -24.18 -51.75 -30.51\n",
" lat (nod2) float64 74.28 73.91 74.05 74.63 ... 60.14 89.4 60.24\n",
" * nz1 (nz1) float64 2.5 7.5 15.0 ... 5.525e+03 5.825e+03 6.125e+03\n",
"Dimensions without coordinates: nelem, nod2, three\n",
"Data variables:\n",
" nlevels_nod2D (nod2) int32 23 22 22 23 23 23 29 32 ... 34 35 31 31 33 38 33\n",
" nod_area (nod2, nz) float64 ...\n",
" elem_area (nelem) float64 7.572e+08 7.279e+08 ... 8.252e+09 1.068e+10\n",
" faces (nelem, three) int64 0 11 1 1 11 9 ... 765 767 787 779 783\n",
"Attributes:\n",
" Conventions: CF-1.7"
]
},
"execution_count": 6,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"# select on merged dataset\n",
"grid_sel = merged_grid_dataset.pyfesom2.select(region=(-80,60,60,90))\n",
"grid_sel"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {
"ExecuteTime": {
"end_time": "2021-07-18T05:21:56.006088Z",
"start_time": "2021-07-18T05:21:55.745886Z"
}
},
"outputs": [],
"source": [
"# save to a file \n",
"grid_sel.to_netcdf('subset_coords.nc')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.8"
}
},
"nbformat": 4,
"nbformat_minor": 4
}
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