Created
November 15, 2021 12:01
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Manually annotate raw MNE objects on GUI, save annotation file, create events from annotations.
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from mne import find_events, events_from_annotations | |
import mne | |
# get some raw data, replace by your own files | |
from moabb.datasets import BNCI2014001 | |
sessions = BNCI2014001().get_data(subjects=[1]) | |
raw = sessions[1]['session_T']['run_1'] | |
ev = find_events(raw) | |
# Annotate plot | |
raw.plot(events=ev, color={'eeg': 'steelblue'}) | |
# 1. press a to open annotation toolbox | |
# 2. directly type annotation name (e.g. inspi or expi) | |
# 3. click add new label and repeat for all annotation you need | |
# 4. drag and click on plot to create annotation, rght click to remove | |
# 5. Focus on annotation windows: Esc to finish annotations and Esc to quit plot | |
# Verify annotations | |
for ann in raw.annotations: | |
print(f"{ann['description']}: onset={ann['onset']}, duration:{ann['duration']}") | |
# Save annotations | |
raw.annotations.save("annotations.csv") | |
# Convert annotation to events | |
ev_resp, ev_resp_id = events events_from_annotations(raw, event_id={'inspi': 1, 'expi': 2}) | |
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