Created
May 8, 2011 18:26
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Read FITS X-ray event file and return binned image with WCS
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import numpy as np | |
import pywcs | |
import pyfits | |
class EventFile(object): | |
def __init__(self, filename, hdu=1): | |
self.filename= filename | |
hdus = pyfits.open(filename) | |
self.header = hdus[hdu].header | |
self.hdus = hdus | |
events = hdus[hdu].data | |
self.events = events[np.argsort(events.field('x'))] | |
@property | |
def ra_col(self): | |
if not hasattr(self, '_ra_col'): | |
for key, val in self.header.items(): | |
if val == 'RA---TAN': | |
self._ra_col = key[5:] | |
break | |
else: | |
raise ValueError('No RA---TAN ctype found') | |
return self._ra_col | |
@property | |
def dec_col(self): | |
if not hasattr(self, '_dec_col'): | |
for key, val in self.header.items(): | |
if val == 'DEC--TAN': | |
self._dec_col = key[5:] | |
break | |
else: | |
raise ValueError('No DEC--TAN ctype found') | |
return self._dec_col | |
@property | |
def wcs(self): | |
""" | |
Return a pywcs.WCS object corresponding to the given event file HDU. | |
:param events_hdu: pyfits HDU | |
""" | |
if not hasattr(self, '_wcs'): | |
header = self.header | |
ra_col = self.ra_col | |
dec_col = self.dec_col | |
wcs = pywcs.WCS(naxis=2) | |
wcs.wcs.equinox = 2000.0 | |
wcs.wcs.crpix = [header['TCRPX'+ra_col], header['TCRPX'+dec_col]] | |
wcs.wcs.cdelt = [header['TCDLT'+ra_col], header['TCDLT'+dec_col]] | |
wcs.wcs.cunit = [header['TCUNI'+ra_col], header['TCUNI'+dec_col]] | |
wcs.wcs.crval = [header['TCRVL'+ra_col], header['TCRVL'+dec_col]] | |
wcs.wcs.ctype = ["RA---TAN", "DEC--TAN"] | |
self._wcs = wcs | |
return self._wcs | |
def pix2sky(self, i, j): | |
return self.wcs.wcs_pix2sky([[i, j]], 1)[0] | |
def sky2pix(self, x, y): | |
return self.wcs.wcs_sky2pix([[x, y]], 1)[0] | |
def event_filter(self, filters, events=None): | |
if events is None: | |
events = self.events | |
if not filters: | |
return events | |
ok = np.ones(len(events), dtype=np.bool) | |
for colname, limits in filters: | |
colvals = events.field(colname) | |
try: | |
lo, hi = limits | |
if lo is None and hi is not None: | |
ok &= (colvals < hi) | |
elif lo is not None and hi is None: | |
ok &= (colvals >= lo) | |
elif lo is not None and hi is not None: | |
ok &= (colvals >= lo) & (colvals < hi) | |
except TypeError: | |
ok &= (colvals == limits) | |
return events[ok] | |
def binned_image(self, x0=None, x1=None, dx=1.0, y0=None, y1=None, dy=1.0, filters=None): | |
dx = float(dx) | |
dy = float(dy) | |
if x0 is None: | |
x0 = np.min(events.field('x')) | |
if x1 is None: | |
x1 = np.max(events.field('x')) | |
if y0 is None: | |
y0 = np.min(events.field('y')) | |
if y1 is None: | |
y1 = np.max(events.field('y')) | |
events = self.events | |
i0, i1 = np.searchsorted(events.field('x'), [x0, x1]) | |
events = events[i0:i1] | |
ok = (events.field('y') >= y0) & (events.field('y') <= y1) | |
events = self.event_filter(filters, events[ok]) | |
img, x_bins, y_bins = np.histogram2d(events.field('y'), events.field('x'), | |
bins=[np.arange(y0, y1, dy), np.arange(x0, x1, dx)]) | |
# Find the position in image coords of the sky pix reference position | |
# The -0.5 assumes that image coords refer to the center of the image bin. | |
x_crpix = (self.wcs.wcs.crpix[0] - (x0 - dx/2.0)) / dx | |
y_crpix = (self.wcs.wcs.crpix[1] - (y0 - dy/2.0)) / dy | |
wcs = pywcs.WCS(naxis=2) | |
wcs.wcs.equinox = 2000.0 | |
wcs.wcs.crpix = [x_crpix, y_crpix] | |
wcs.wcs.cdelt = [self.wcs.wcs.cdelt[0] * dx, self.wcs.wcs.cdelt[1] * dy, ] | |
wcs.wcs.cunit = [self.wcs.wcs.cunit[0], self.wcs.wcs.cunit[1]] | |
wcs.wcs.crval = [self.wcs.wcs.crval[0], self.wcs.wcs.crval[1]] | |
wcs.wcs.ctype = [self.wcs.wcs.ctype[0], self.wcs.wcs.ctype[1]] | |
hdu = pyfits.PrimaryHDU(np.array(img, dtype=np.int32), header=wcs.to_header()) | |
return hdu | |
def test(bin=4): | |
evt = EventFile('acis_evt2.fits') | |
print evt.wcs.wcs_pix2sky([[4096.5, 4096.5]], 1) | |
return bin_events(hdus[1], dx=bin, dy=bin) | |
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