yaml for testing transcript fusion detection pipeline

fusion.yaml

details:
  - files: [../input/DatasetP2_SimulatedReads_1.fastq, ../input/DatasetP2_SimulatedReads_2.fastq]
    description: 'random'
    analysis: RNA-seq
    genome_build: GRCh37
    # include a lane (run group ID) for each sample
    # lane: 1
    # to do multi-sample variant calling, assign samples the same metadata / batch
    # metadata:
    #   batch: your-arbitrary-batch-name
    algorithm:
      
      aligner: tophat2
      quality_format: Standard
      trim_reads: read_through
      adapters: [truseq, polya]
      fusion_mode: True
      strandedness: unstranded