taoliu

#!/bin/bash
# modified from prockmon

unset LD_LIBRARY_PATH

if [[ $# < 2 ]];then
    echo 'Check total CPU time and maximum memory usage of a process.'
    echo 'need two parameters: $0 <interval> <pid>'
    exit 1;
fi

taoliu

#!/bin/bash

# check commands: slopBed, bedGraphToBigWig and bedClip

which bedtools &>/dev/null || { echo "bedtools not found! Download bedTools: <http://code.google.com/p/bedtools/>"; exit 1; }
which bedGraphToBigWig &>/dev/null || { echo "bedGraphToBigWig not found! Download: <http://hgdownload.cse.ucsc.edu/admin/exe/>"; exit 1; }
which bedClip &>/dev/null || { echo "bedClip not found! Download: <http://hgdownload.cse.ucsc.edu/admin/exe/>"; exit 1; }

# end of checking

taoliu

#!/usr/bin/perl -w
# Time-stamp: <2004-04-02 14:37:41 Tao Liu>

use strict;

if (@ARGV>0 and $ARGV[0] eq "-h") {
    print "ediff : compute two sets with \'or diff and\'. \nUsage:\tediff [-h] : help, this info\n\tediff A or B : union of two sets\n\tediff A diff B : elements in
 A but not in B\n\tediff A and B : intersection of two sets\n";
    exit;
}

taoliu

#!/usr/bin/env python

import subprocess
import sys
import os
import time

#time_stamp=time.strftime("%y-%m-%d_%H-%M-%S")
time_stamp=str(time.time())

taoliu

#!/bin/bash

if [[ $# < 2 ]];then
    echo 'need two parameters: $0 <interval> <pid>'
    exit 1;
fi

INTERVAL=$1
PID=$2

pyprofile

#!/usr/bin/env bash

## pyprofile: profile Python script

## $Revision$
## Copyright 2011 Michael M. Hoffman <mmh1@uw.edu>

set -o nounset
set -o pipefail
set -o errexit