tarunaaggarwal

for k in 61 63 65 67 69; do
	mkdir trimk_pe_mp$k; \
	abyss-pe -C trimk_pe_mp$k lib='pe100' mp='mp1' np=8 name=gm5_abyss_pe_mp$k \
	k=$k n=5 \
	pe100='/fungi/taruna/geosmithia/trim/gm5/gm5_k21corr_trim.Phred2_1P.fastq /fungi/taruna/geosmithia/trim/gm5/gm5_k21corr_trim.Phred2_2P.fastq' \
	mp1='/fungi/taruna/geosmithia/trim/gm5/gm5_mpreads.mp.fastq' \
	se='/fungi/taruna/geosmithia/trim/gm5/gm5_k21corr_trim.Phred2_1U.fastq /fungi/taruna/geosmithia/trim/gm5/gm5_k21corr_trim.Phred2_2U.fastq'
done