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August 3, 2018 04:12
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| ({:ID "rs3131972", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.853", | |
| :GTZ "1/1", | |
| :R "0.861", | |
| :NORMY "0.828", | |
| :BAF "1", | |
| :LRR "-0.053", | |
| :GTA "1/1", | |
| :THETA "0.975", | |
| :Y "2764", | |
| :NORMX "0.033", | |
| :X "278"}, | |
| :POS "752721", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.062", | |
| :devY_AA "0.019", | |
| :zthresh_X "0.149531775683", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.016", | |
| :meanY_AA "0.04", | |
| :AF "1.00", | |
| :N_AA "48", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "AACGTTCACTTTCTGTCTGTGTTCACGTCACCAAGAGAATAGAAAGGAAA", | |
| :meanTHETA_BB "0.965", | |
| :meanX_AA "0.875", | |
| :zthresh_Y "0.163959980255", | |
| :devTHETA_AA "0.014", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.549", | |
| :meanY_BB "0.851", | |
| :PROBE_B ".", | |
| :devX_AA "0.097", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.111", | |
| :devY_BB "0.096", | |
| :ALLELE_B "G", | |
| :N_AB "95", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "752721", | |
| :meanR_AA "0.915", | |
| :devTHETA_AB "0.065", | |
| :GC_SCORE "0.826", | |
| :devY_AB "0.075", | |
| :meanTHETA_AB "0.522", | |
| :meanTHETA_AA "0.029", | |
| :devX_AB "0.073", | |
| :refSNP "rs3131972", | |
| :meanR_BB "0.897", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.046", | |
| :N_BB "120", | |
| :meanX_AB "0.513"}} | |
| {:ID "rs11240777", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.792", | |
| :GTZ "0/0", | |
| :R "1.456", | |
| :NORMY "1.339", | |
| :BAF "0.989", | |
| :LRR "0.038", | |
| :GTA "0/0", | |
| :THETA "0.945", | |
| :Y "4466", | |
| :NORMX "0.117", | |
| :X "836"}, | |
| :POS "798959", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.879", | |
| :devY_AA "0.027", | |
| :zthresh_X "0.227451082446", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.021", | |
| :meanY_AA "0.052", | |
| :AF "0.00", | |
| :N_AA "63", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "GTTGGGTAGTGGAAGGTTTCAGAGTTGATAGCATTTGGATTGGGCTTTAA", | |
| :meanTHETA_BB "0.956", | |
| :meanX_AA "1.636", | |
| :zthresh_Y "0.190418403074", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.859", | |
| :meanY_BB "1.317", | |
| :PROBE_B ".", | |
| :devX_AA "0.138", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.144", | |
| :devY_BB "0.096", | |
| :ALLELE_B "G*", | |
| :N_AB "105", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "798959", | |
| :meanR_AA "1.688", | |
| :devTHETA_AB "0.031", | |
| :GC_SCORE "0.785", | |
| :devY_AB "0.079", | |
| :meanTHETA_AB "0.446", | |
| :meanTHETA_AA "0.02", | |
| :devX_AB "0.089", | |
| :refSNP "rs11240777", | |
| :meanR_BB "1.408", | |
| :devR_AA "0.14", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.091", | |
| :N_BB "91", | |
| :meanX_AB "1.02"}} | |
| {:ID "rs4970383", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.662", | |
| :GTZ "0/0", | |
| :R "0.343", | |
| :NORMY "0.278", | |
| :BAF "0.921", | |
| :LRR "-0.285", | |
| :GTA "0/0", | |
| :THETA "0.852", | |
| :Y "932", | |
| :NORMX "0.066", | |
| :X "422"}, | |
| :POS "838555", | |
| :ALT "A", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.424", | |
| :devY_AA "0.021", | |
| :zthresh_X "0.173421449432", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.023", | |
| :meanY_AA "0.041", | |
| :AF "0.00", | |
| :N_AA "31", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "CATCTCCTCTTCTTATACATTGTATCAGGGCCCGCCCCATGACCCCATTT", | |
| :meanTHETA_BB "0.909", | |
| :meanX_AA "0.305", | |
| :zthresh_Y "0.170245412907", | |
| :devTHETA_AA "0.039", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.228", | |
| :meanY_BB "0.365", | |
| :PROBE_B ".", | |
| :devX_AA "0.09", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.09", | |
| :ALLELE_B "C*", | |
| :N_AB "117", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "838555", | |
| :meanR_AA "0.346", | |
| :devTHETA_AB "0.059", | |
| :GC_SCORE "0.728", | |
| :devY_AB "0.057", | |
| :meanTHETA_AB "0.549", | |
| :meanTHETA_AA "0.085", | |
| :devX_AB "0.05", | |
| :refSNP "rs4970383", | |
| :meanR_BB "0.417", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.038", | |
| :meanX_BB "0.052", | |
| :N_BB "116", | |
| :meanX_AB "0.196"}} | |
| {:ID "rs4475691", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.91", | |
| :GTZ "0/0", | |
| :R "1.221", | |
| :NORMY "1.145", | |
| :BAF "0.989", | |
| :LRR "0.156", | |
| :GTA "0/0", | |
| :THETA "0.958", | |
| :Y "3820", | |
| :NORMX "0.076", | |
| :X "570"}, | |
| :POS "846808", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.405", | |
| :devY_AA "0.029", | |
| :zthresh_X "0.159383049854", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.051", | |
| :AF "0.00", | |
| :N_AA "15", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "CGTACAAATCCACTGACTTGCCATTGCCAGCTGCGTGTGAGCACAAAGGC", | |
| :meanTHETA_BB "0.968", | |
| :meanX_AA "1.265", | |
| :zthresh_Y "0.16780841709", | |
| :devTHETA_AA "0.015", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.688", | |
| :meanY_BB "1.037", | |
| :PROBE_B ".", | |
| :devX_AA "0.146", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.124", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C*", | |
| :N_AB "91", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "846808", | |
| :meanR_AA "1.316", | |
| :devTHETA_AB "0.039", | |
| :GC_SCORE "0.873", | |
| :devY_AB "0.085", | |
| :meanTHETA_AB "0.487", | |
| :meanTHETA_AA "0.026", | |
| :devX_AB "0.087", | |
| :refSNP "rs4475691", | |
| :meanR_BB "1.089", | |
| :devR_AA "0.149", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.052", | |
| :N_BB "156", | |
| :meanX_AB "0.716"}} | |
| {:ID "rs13302982", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.847", | |
| :GTZ "1/1", | |
| :R "1.265", | |
| :NORMY "1.165", | |
| :BAF "0.991", | |
| :LRR "0.026", | |
| :GTA "1/1", | |
| :THETA "0.946", | |
| :Y "3885", | |
| :NORMX "0.1", | |
| :X "716"}, | |
| :POS "861808", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.572", | |
| :devY_AA "0.022", | |
| :zthresh_X "0.208990850235", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.039", | |
| :AF "1.00", | |
| :N_AA "73", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "AGCACCCAGAGACACAAGTCACTCACACCCAAGCCTGTAGCTCCCCAAAA", | |
| :meanTHETA_BB "0.955", | |
| :meanX_AA "1.353", | |
| :zthresh_Y "0.184197017159", | |
| :devTHETA_AA "0.01", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.747", | |
| :meanY_BB "1.154", | |
| :PROBE_B ".", | |
| :devX_AA "0.1", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.121", | |
| :devY_BB "0.096", | |
| :ALLELE_B "G", | |
| :N_AB "66", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "861808", | |
| :meanR_AA "1.392", | |
| :devTHETA_AB "0.022", | |
| :GC_SCORE "0.821", | |
| :devY_AB "0.055", | |
| :meanTHETA_AB "0.468", | |
| :meanTHETA_AA "0.018", | |
| :devX_AB "0.059", | |
| :refSNP "rs34798198", | |
| :meanR_BB "1.236", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.082", | |
| :N_BB "124", | |
| :meanX_AB "0.826"}} | |
| {:ID "rs28391282", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.77", | |
| :GTZ "0/0", | |
| :R "1.248", | |
| :NORMY "1.14", | |
| :BAF "0.995", | |
| :LRR "0.097", | |
| :GTA "0/0", | |
| :THETA "0.94", | |
| :Y "3802", | |
| :NORMX "0.108", | |
| :X "764"}, | |
| :POS "904165", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.314", | |
| :devY_AA "0.029", | |
| :zthresh_X "0.220071589972", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.021", | |
| :meanY_AA "0.137", | |
| :AF "0.00", | |
| :N_AA "7", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "TCTTGGAGCAGGTAATGTCTGAGCAAAGCTGCAAAGCGGGTAAGGAGGGG", | |
| :meanTHETA_BB "0.944", | |
| :meanX_AA "1.018", | |
| :zthresh_Y "0.189233398723", | |
| :devTHETA_AA "0.018", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.688", | |
| :meanY_BB "1.071", | |
| :PROBE_B ".", | |
| :devX_AA "0.092", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.107", | |
| :devY_BB "0.094", | |
| :ALLELE_B "G*", | |
| :N_AB "60", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "904165", | |
| :meanR_AA "1.155", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.772", | |
| :devY_AB "0.058", | |
| :meanTHETA_AB "0.53", | |
| :meanTHETA_AA "0.085", | |
| :devX_AB "0.054", | |
| :refSNP "rs28391282", | |
| :meanR_BB "1.165", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.094", | |
| :N_BB "195", | |
| :meanX_AB "0.627"}} | |
| {:ID "rs2341354", | |
| "200557070005_R06C01" {:GT "0/1", | |
| :IGC "0.753", | |
| :GTZ "0/1", | |
| :R "2.641", | |
| :NORMY "1.13", | |
| :BAF "0.537", | |
| :LRR "0.088", | |
| :GTA "0/1", | |
| :THETA "0.409", | |
| :Y "3807", | |
| :NORMX "1.511", | |
| :X "9267"}, | |
| :POS "918573", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.55", | |
| :devY_AA "0.039", | |
| :zthresh_X "0.173787508925", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.118", | |
| :AF "0.500", | |
| :N_AA "57", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "ACACGGTGCGGCTGTGAATATCTGGGAACATTCCTTTCGGCGAACCTCTC", | |
| :meanTHETA_BB "0.979", | |
| :meanX_AA "2.29", | |
| :zthresh_Y "0.171358874593", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.997", | |
| :meanY_BB "1.619", | |
| :PROBE_B ".", | |
| :devX_AA "0.194", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.188", | |
| :devY_BB "0.103", | |
| :ALLELE_B "G", | |
| :N_AB "101", | |
| :devR_BB "0.104", | |
| :ILLUMINA_POS "918573", | |
| :meanR_AA "2.408", | |
| :devTHETA_AB "0.018", | |
| :GC_SCORE "0.762", | |
| :devY_AB "0.087", | |
| :meanTHETA_AB "0.363", | |
| :meanTHETA_AA "0.033", | |
| :devX_AB "0.128", | |
| :refSNP "rs2341354", | |
| :meanR_BB "1.673", | |
| :devR_AA "0.201", | |
| :devTHETA_BB "0.009", | |
| :meanX_BB "0.054", | |
| :N_BB "104", | |
| :meanX_AB "1.553"}} | |
| {:ID "rs9777703", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.907", | |
| :GTZ "1/1", | |
| :R "1.407", | |
| :NORMY "0.076", | |
| :BAF "0.004", | |
| :LRR "0.105", | |
| :GTA "1/1", | |
| :THETA "0.036", | |
| :Y "294", | |
| :NORMX "1.331", | |
| :X "8074"}, | |
| :POS "928836", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.592", | |
| :devY_AA "0.016", | |
| :zthresh_X "0.179105359188", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.036", | |
| :meanY_AA "0.061", | |
| :AF "1.00", | |
| :N_AA "223", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "ACAAACCAGCTTCCTGGGGACGTGCTGATGGAGCTTCCTCTTCCTAAAGC", | |
| :meanTHETA_BB "0.983", | |
| :meanX_AA "1.245", | |
| :zthresh_Y "0.168257251187", | |
| :devTHETA_AA "0.008", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.894", | |
| :meanY_BB "1.289", | |
| :PROBE_B ".", | |
| :devX_AA "0.116", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.173", | |
| :devY_BB "0.117", | |
| :ALLELE_B "C*", | |
| :N_AB "34", | |
| :devR_BB "0.115", | |
| :ILLUMINA_POS "928836", | |
| :meanR_AA "1.306", | |
| :devTHETA_AB "0.026", | |
| :GC_SCORE "0.87", | |
| :devY_AB "0.075", | |
| :meanTHETA_AB "0.578", | |
| :meanTHETA_AA "0.031", | |
| :devX_AB "0.062", | |
| :refSNP "rs9777703", | |
| :meanR_BB "1.323", | |
| :devR_AA "0.121", | |
| :devTHETA_BB "0.018", | |
| :meanX_BB "0.033", | |
| :N_BB "7", | |
| :meanX_AB "0.698"}} | |
| {:ID "rs1891910", | |
| "200557070005_R06C01" {:GT "1/0", | |
| :IGC "0.837", | |
| :GTZ "1/0", | |
| :R "1.768", | |
| :NORMY "0.851", | |
| :BAF "0.504", | |
| :LRR "0.093", | |
| :GTA "1/0", | |
| :THETA "0.476", | |
| :Y "2863", | |
| :NORMX "0.917", | |
| :X "5640"}, | |
| :POS "932457", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.66", | |
| :devY_AA "0.041", | |
| :zthresh_X "0.159959950453", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.054", | |
| :AF "0.500", | |
| :N_AA "6", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "CTGAGACCTCGCTAGTCTAACCCAAACCTCCCAGCTCTGTCATTCAAAGG", | |
| :meanTHETA_BB "0.975", | |
| :meanX_AA "1.429", | |
| :zthresh_Y "0.166966902628", | |
| :devTHETA_AA "0.019", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.794", | |
| :meanY_BB "1.215", | |
| :PROBE_B ".", | |
| :devX_AA "0.134", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.151", | |
| :devY_BB "0.098", | |
| :ALLELE_B "G*", | |
| :N_AB "53", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "932457", | |
| :meanR_AA "1.483", | |
| :devTHETA_AB "0.021", | |
| :GC_SCORE "0.814", | |
| :devY_AB "0.07", | |
| :meanTHETA_AB "0.473", | |
| :meanTHETA_AA "0.024", | |
| :devX_AB "0.075", | |
| :refSNP "rs1891910", | |
| :meanR_BB "1.262", | |
| :devR_AA "0.133", | |
| :devTHETA_BB "0.009", | |
| :meanX_BB "0.047", | |
| :N_BB "205", | |
| :meanX_AB "0.866"}} | |
| {:ID "rs3128117", | |
| "200557070005_R06C01" {:GT "0/1", | |
| :IGC "0.808", | |
| :GTZ "0/1", | |
| :R "1.783", | |
| :NORMY "0.843", | |
| :BAF "0.504", | |
| :LRR "0.027", | |
| :GTA "0/1", | |
| :THETA "0.465", | |
| :Y "2835", | |
| :NORMX "0.941", | |
| :X "5784"}, | |
| :POS "944564", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.754", | |
| :devY_AA "0.027", | |
| :zthresh_X "0.218964120731", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.026", | |
| :meanY_AA "0.102", | |
| :AF "0.500", | |
| :N_AA "137", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "GGGTTGCTGAACAATGTACCACAAACTGGGTGTTAAACTTCACACCACAG", | |
| :meanTHETA_BB "0.974", | |
| :meanX_AA "1.528", | |
| :zthresh_Y "0.370218293792", | |
| :devTHETA_AA "0.012", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.823", | |
| :meanY_BB "1.278", | |
| :PROBE_B ".", | |
| :devX_AA "0.121", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.13", | |
| :devY_BB "0.1", | |
| :ALLELE_B "C", | |
| :N_AB "103", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "944564", | |
| :meanR_AA "1.631", | |
| :devTHETA_AB "0.02", | |
| :GC_SCORE "0.795", | |
| :devY_AB "0.065", | |
| :meanTHETA_AB "0.461", | |
| :meanTHETA_AA "0.043", | |
| :devX_AB "0.072", | |
| :refSNP "rs3128117", | |
| :meanR_BB "1.329", | |
| :devR_AA "0.126", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.051", | |
| :N_BB "23", | |
| :meanX_AB "0.931"}} | |
| {:ID "rs3128126", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.819", | |
| :GTZ "0/0", | |
| :R "0.478", | |
| :NORMY "0.078", | |
| :BAF "0.037", | |
| :LRR "0.207", | |
| :GTA "0/0", | |
| :THETA "0.122", | |
| :Y "276", | |
| :NORMX "0.4", | |
| :X "2428"}, | |
| :POS "962210", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.496", | |
| :devY_AA "0.018", | |
| :zthresh_X "0.173672420382", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.046", | |
| :AF "0.00", | |
| :N_AA "138", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "CTGCCCCTCAGAGATGAGAAAAAGGAAGTGCAGGGCTGAGATATCACCCC", | |
| :meanTHETA_BB "0.941", | |
| :meanX_AA "0.361", | |
| :zthresh_Y "0.146362310703", | |
| :devTHETA_AA "0.027", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.298", | |
| :meanY_BB "0.478", | |
| :PROBE_B ".", | |
| :devX_AA "0.09", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.093", | |
| :ALLELE_B "G", | |
| :N_AB "104", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "962210", | |
| :meanR_AA "0.407", | |
| :devTHETA_AB "0.036", | |
| :GC_SCORE "0.802", | |
| :devY_AB "0.062", | |
| :meanTHETA_AB "0.627", | |
| :meanTHETA_AA "0.081", | |
| :devX_AB "0.042", | |
| :refSNP "rs3128126", | |
| :meanR_BB "0.522", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.024", | |
| :meanX_BB "0.044", | |
| :N_BB "22", | |
| :meanX_AB "0.198"}} | |
| {:ID "rs2465136", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.917", | |
| :GTZ "0/0", | |
| :R "1.383", | |
| :NORMY "0.074", | |
| :BAF "0.008", | |
| :LRR "0.167", | |
| :GTA "0/0", | |
| :THETA "0.036", | |
| :Y "288", | |
| :NORMX "1.309", | |
| :X "7940"}, | |
| :POS "990417", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.38", | |
| :devY_AA "0.017", | |
| :zthresh_X "0.173424852661", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.021", | |
| :meanY_AA "0.052", | |
| :AF "0.00", | |
| :N_AA "119", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "CCAGCAGTCCCTCCGGCCAACACTCAGGCAAGAAAATCATATCAAAAAGC", | |
| :meanTHETA_BB "0.961", | |
| :meanX_AA "1.178", | |
| :zthresh_Y "0.144430554518", | |
| :devTHETA_AA "0.01", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.689", | |
| :meanY_BB "1.048", | |
| :PROBE_B ".", | |
| :devX_AA "0.097", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.102", | |
| :devY_BB "0.096", | |
| :ALLELE_B "C", | |
| :N_AB "99", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "990417", | |
| :meanR_AA "1.23", | |
| :devTHETA_AB "0.027", | |
| :GC_SCORE "0.88", | |
| :devY_AB "0.058", | |
| :meanTHETA_AB "0.499", | |
| :meanTHETA_AA "0.028", | |
| :devX_AB "0.058", | |
| :refSNP "rs2465136", | |
| :meanR_BB "1.112", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.064", | |
| :N_BB "46", | |
| :meanX_AB "0.691"}} | |
| {:ID "rs7526076", | |
| "200557070005_R06C01" {:GT "0/1", | |
| :IGC "0.85", | |
| :GTZ "0/1", | |
| :R "1.704", | |
| :NORMY "0.775", | |
| :BAF "0.46", | |
| :LRR "0.342", | |
| :GTA "0/1", | |
| :THETA "0.442", | |
| :Y "2609", | |
| :NORMX "0.929", | |
| :X "5706"}, | |
| :POS "998395", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.356", | |
| :devY_AA "0.036", | |
| :zthresh_X "0.422273143551", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.033", | |
| :meanY_AA "0.033", | |
| :AF "0.500", | |
| :N_AA "4", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "TTCGAGCACAGTGGCCTCAAGCCACCATCGTGGGTGTTACCGTGGAAACA", | |
| :meanTHETA_BB "0.919", | |
| :meanX_AA "1.177", | |
| :zthresh_Y "0.229459352736", | |
| :devTHETA_AA "0.02", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.656", | |
| :meanY_BB "1.038", | |
| :PROBE_B ".", | |
| :devX_AA "0.12", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.146", | |
| :devY_BB "0.094", | |
| :ALLELE_B "G", | |
| :N_AB "62", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "998395", | |
| :meanR_AA "1.21", | |
| :devTHETA_AB "0.028", | |
| :GC_SCORE "0.824", | |
| :devY_AB "0.064", | |
| :meanTHETA_AB "0.479", | |
| :meanTHETA_AA "0.018", | |
| :devX_AB "0.068", | |
| :refSNP "rs7526076", | |
| :meanR_BB "1.17", | |
| :devR_AA "0.118", | |
| :devTHETA_BB "0.021", | |
| :meanX_BB "0.132", | |
| :N_BB "198", | |
| :meanX_AB "0.7"}} | |
| {:ID "rs9442372", | |
| "200557070005_R06C01" {:GT "0/1", | |
| :IGC "0.82", | |
| :GTZ "0/1", | |
| :R "1.026", | |
| :NORMY "0.571", | |
| :BAF "0.494", | |
| :LRR "0.084", | |
| :GTA "0/1", | |
| :THETA "0.571", | |
| :Y "1917", | |
| :NORMX "0.456", | |
| :X "2815"}, | |
| :POS "1018704", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.97", | |
| :devY_AA "0.019", | |
| :zthresh_X "0.178336317276", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.088", | |
| :AF "0.500", | |
| :N_AA "32", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "GTAACCCCCTGCAAAGCCCCTTCTTCTAAATAAGGTCACATTCGAGGTCT", | |
| :meanTHETA_BB "0.95", | |
| :meanX_AA "0.712", | |
| :zthresh_Y "0.175480397975", | |
| :devTHETA_AA "0.016", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.544", | |
| :meanY_BB "0.837", | |
| :PROBE_B ".", | |
| :devX_AA "0.09", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.118", | |
| :devY_BB "0.094", | |
| :ALLELE_B "G", | |
| :N_AB "129", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1018704", | |
| :meanR_AA "0.799", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.803", | |
| :devY_AB "0.059", | |
| :meanTHETA_AB "0.577", | |
| :meanTHETA_AA "0.078", | |
| :devX_AB "0.048", | |
| :refSNP "rs9442372", | |
| :meanR_BB "0.903", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.014", | |
| :meanX_BB "0.066", | |
| :N_BB "103", | |
| :meanX_AB "0.426"}} | |
| {:ID "rs10907178", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.815", | |
| :GTZ "0/0", | |
| :R "0.71", | |
| :NORMY "0.033", | |
| :BAF "0", | |
| :LRR "0.508", | |
| :GTA "0/0", | |
| :THETA "0.032", | |
| :Y "136", | |
| :NORMX "0.676", | |
| :X "4099"}, | |
| :POS "1021583", | |
| :ALT "C", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.516", | |
| :devY_AA "0.017", | |
| :zthresh_X "0.172340550293", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.016", | |
| :meanY_AA "0.042", | |
| :AF "0.00", | |
| :N_AA "181", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "AGAAGCTGAGGCCGGGGCAGGTGGTAACTTTCCCAGACCCCGCGGCCAGA", | |
| :meanTHETA_BB "0.927", | |
| :meanX_AA "0.458", | |
| :zthresh_Y "0.143032176911", | |
| :devTHETA_AA "0.022", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.263", | |
| :meanY_BB "0.445", | |
| :PROBE_B ".", | |
| :devX_AA "0.093", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.091", | |
| :ALLELE_B "C", | |
| :N_AB "69", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1021583", | |
| :meanR_AA "0.5", | |
| :devTHETA_AB "0.036", | |
| :GC_SCORE "0.799", | |
| :devY_AB "0.053", | |
| :meanTHETA_AB "0.512", | |
| :meanTHETA_AA "0.058", | |
| :devX_AB "0.051", | |
| :refSNP "rs10907178", | |
| :meanR_BB "0.496", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.02", | |
| :meanX_BB "0.052", | |
| :N_BB "14", | |
| :meanX_AB "0.253"}} | |
| {:ID "rs6687776", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.933", | |
| :GTZ "0/0", | |
| :R "0.998", | |
| :NORMY "0.972", | |
| :BAF "1", | |
| :LRR "-0.095", | |
| :GTA "0/0", | |
| :THETA "0.982", | |
| :Y "3240", | |
| :NORMX "0.027", | |
| :X "254"}, | |
| :POS "1030565", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.346", | |
| :devY_AA "0.022", | |
| :zthresh_X "0.152989338613", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.016", | |
| :meanY_AA "0.035", | |
| :AF "0.00", | |
| :N_AA "44", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "TTGACACAATGAGTCTAAAATGGAAACACATGTGACCTGGAATTGCCAAA", | |
| :meanTHETA_BB "0.972", | |
| :meanX_AA "1.246", | |
| :zthresh_Y "0.165325326412", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.632", | |
| :meanY_BB "1.026", | |
| :PROBE_B ".", | |
| :devX_AA "0.1", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C*", | |
| :N_AB "87", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1030565", | |
| :meanR_AA "1.281", | |
| :devTHETA_AB "0.024", | |
| :GC_SCORE "0.897", | |
| :devY_AB "0.054", | |
| :meanTHETA_AB "0.461", | |
| :meanTHETA_AA "0.018", | |
| :devX_AB "0.059", | |
| :refSNP "rs6687776", | |
| :meanR_BB "1.072", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.046", | |
| :N_BB "133", | |
| :meanX_AB "0.714"}} | |
| {:ID "rs6671356", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.886", | |
| :GTZ "0/0", | |
| :R "1.068", | |
| :NORMY "0.066", | |
| :BAF "0.002", | |
| :LRR "0.539", | |
| :GTA "0/0", | |
| :THETA "0.042", | |
| :Y "252", | |
| :NORMX "1.002", | |
| :X "6078"}, | |
| :POS "1040026", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.765", | |
| :devY_AA "0.016", | |
| :zthresh_X "0.173131824389", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.023", | |
| :meanY_AA "0.043", | |
| :AF "0.00", | |
| :N_AA "139", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "CGCTGGTGTTGCTTCCCAGGTGCTCAACTCTGGGCAGTAACAAGCCTGCA", | |
| :meanTHETA_BB "0.941", | |
| :meanX_AA "0.692", | |
| :zthresh_Y "0.145665558733", | |
| :devTHETA_AA "0.015", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.385", | |
| :meanY_BB "0.64", | |
| :PROBE_B ".", | |
| :devX_AA "0.095", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.11", | |
| :devY_BB "0.094", | |
| :ALLELE_B "C", | |
| :N_AB "93", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1040026", | |
| :meanR_AA "0.735", | |
| :devTHETA_AB "0.028", | |
| :GC_SCORE "0.851", | |
| :devY_AB "0.053", | |
| :meanTHETA_AB "0.504", | |
| :meanTHETA_AA "0.04", | |
| :devX_AB "0.053", | |
| :refSNP "rs6671356", | |
| :meanR_BB "0.699", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.022", | |
| :meanX_BB "0.059", | |
| :N_BB "32", | |
| :meanX_AB "0.38"}} | |
| {:ID "rs9442373", | |
| "200557070005_R06C01" {:GT "1/0", | |
| :IGC "0.812", | |
| :GTZ "1/0", | |
| :R "2.03", | |
| :NORMY "0.974", | |
| :BAF "0.507", | |
| :LRR "0.037", | |
| :GTA "1/0", | |
| :THETA "0.475", | |
| :Y "3276", | |
| :NORMX "1.055", | |
| :X "6491"}, | |
| :POS "1062638", | |
| :ALT "A", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.986", | |
| :devY_AA "0.025", | |
| :zthresh_X "0.182717955936", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.023", | |
| :meanY_AA "0.071", | |
| :AF "0.500", | |
| :N_AA "80", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "GAACCATAAAGCATCCACGCGGAAAAGCTTATTCAGATCAATAAAGCTGC", | |
| :meanTHETA_BB "0.966", | |
| :meanX_AA "1.715", | |
| :zthresh_Y "0.181884089963", | |
| :devTHETA_AA "0.009", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.942", | |
| :meanY_BB "1.422", | |
| :PROBE_B ".", | |
| :devX_AA "0.132", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.14", | |
| :devY_BB "0.098", | |
| :ALLELE_B "C*", | |
| :N_AB "112", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1062638", | |
| :meanR_AA "1.786", | |
| :devTHETA_AB "0.016", | |
| :GC_SCORE "0.798", | |
| :devY_AB "0.069", | |
| :meanTHETA_AB "0.467", | |
| :meanTHETA_AA "0.026", | |
| :devX_AB "0.076", | |
| :refSNP "rs9442373", | |
| :meanR_BB "1.498", | |
| :devR_AA "0.135", | |
| :devTHETA_BB "0.011", | |
| :meanX_BB "0.076", | |
| :N_BB "71", | |
| :meanX_AB "1.044"}} | |
| {:ID "rs10907182", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.759", | |
| :GTZ "1/1", | |
| :R "0.56", | |
| :NORMY "0.494", | |
| :BAF "1", | |
| :LRR "0.336", | |
| :GTA "1/1", | |
| :THETA "0.916", | |
| :Y "1651", | |
| :NORMX "0.066", | |
| :X "444"}, | |
| :POS "1066403", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.508", | |
| :devY_AA "0.019", | |
| :zthresh_X "0.167716038716", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.056", | |
| :AF "1.00", | |
| :N_AA "72", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "AAACCTCGCCGCAGGGTCCCCGGCTCCCGAGGCTGCTGTGGGTCCGGCAA", | |
| :meanTHETA_BB "0.908", | |
| :meanX_AA "0.515", | |
| :zthresh_Y "0.169868235681", | |
| :devTHETA_AA "0.022", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.227", | |
| :meanY_BB "0.388", | |
| :PROBE_B ".", | |
| :devX_AA "0.092", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.089", | |
| :ALLELE_B "C", | |
| :N_AB "113", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1066403", | |
| :meanR_AA "0.57", | |
| :devTHETA_AB "0.035", | |
| :GC_SCORE "0.765", | |
| :devY_AB "0.047", | |
| :meanTHETA_AB "0.433", | |
| :meanTHETA_AA "0.069", | |
| :devX_AB "0.057", | |
| :refSNP "rs10907182", | |
| :meanR_BB "0.444", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.028", | |
| :meanX_BB "0.057", | |
| :N_BB "79", | |
| :meanX_AB "0.281"}} | |
| {:ID "rs9442385", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.768", | |
| :GTZ "1/1", | |
| :R "1.704", | |
| :NORMY "1.639", | |
| :BAF "0.998", | |
| :LRR "0.002", | |
| :GTA "1/1", | |
| :THETA "0.975", | |
| :Y "5461", | |
| :NORMX "0.065", | |
| :X "555"}, | |
| :POS "1097335", | |
| :ALT "G", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.531", | |
| :devY_AA "0.044", | |
| :zthresh_X "0.175625569222", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.079", | |
| :AF "1.00", | |
| :N_AA "24", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "GCTGGTCGGGCTAATTACAGACCGTTTGTCGTTTCATTATGGGCTCTTCC", | |
| :meanTHETA_BB "0.977", | |
| :meanX_AA "2.234", | |
| :zthresh_Y "0.172845927149", | |
| :devTHETA_AA "0.013", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.981", | |
| :meanY_BB "1.64", | |
| :PROBE_B ".", | |
| :devX_AA "0.186", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.222", | |
| :devY_BB "0.099", | |
| :ALLELE_B "G", | |
| :N_AB "70", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1097335", | |
| :meanR_AA "2.312", | |
| :devTHETA_AB "0.017", | |
| :GC_SCORE "0.771", | |
| :devY_AB "0.081", | |
| :meanTHETA_AB "0.359", | |
| :meanTHETA_AA "0.022", | |
| :devX_AB "0.12", | |
| :refSNP "rs9442385", | |
| :meanR_BB "1.698", | |
| :devR_AA "0.187", | |
| :devTHETA_BB "0.008", | |
| :meanX_BB "0.058", | |
| :N_BB "169", | |
| :meanX_AB "1.551"}} | |
| {:ID "rs4442317", | |
| "200557070005_R06C01" {:GT "0/1", | |
| :IGC "0.823", | |
| :GTZ "0/1", | |
| :R "1.119", | |
| :NORMY "0.45", | |
| :BAF "0.507", | |
| :LRR "0.247", | |
| :GTA "0/1", | |
| :THETA "0.377", | |
| :Y "1521", | |
| :NORMX "0.669", | |
| :X "4096"}, | |
| :POS "1106784", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.946", | |
| :devY_AA "0.02", | |
| :zthresh_X "0.190880306521", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.021", | |
| :meanY_AA "0.077", | |
| :AF "0.500", | |
| :N_AA "146", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "CTGACAGGAGCTGATGGGGATGGGAAGGACTCGCCCAGCTCCTCTCCAGA", | |
| :meanTHETA_BB "0.945", | |
| :meanX_AA "0.97", | |
| :zthresh_Y "0.22904646091", | |
| :devTHETA_AA "0.013", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.374", | |
| :meanY_BB "0.629", | |
| :PROBE_B ".", | |
| :devX_AA "0.113", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.094", | |
| :ALLELE_B "C", | |
| :N_AB "106", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1106784", | |
| :meanR_AA "1.047", | |
| :devTHETA_AB "0.03", | |
| :GC_SCORE "0.805", | |
| :devY_AB "0.053", | |
| :meanTHETA_AB "0.369", | |
| :meanTHETA_AA "0.051", | |
| :devX_AB "0.077", | |
| :refSNP "rs4442317", | |
| :meanR_BB "0.683", | |
| :devR_AA "0.121", | |
| :devTHETA_BB "0.021", | |
| :meanX_BB "0.054", | |
| :N_BB "10", | |
| :meanX_AB "0.572"}} | |
| {:ID "rs11260542", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.838", | |
| :GTZ "0/0", | |
| :R "1.773", | |
| :NORMY "0.061", | |
| :BAF "0.006", | |
| :LRR "0.136", | |
| :GTA "0/0", | |
| :THETA "0.023", | |
| :Y "256", | |
| :NORMX "1.711", | |
| :X "10379"}, | |
| :POS "1110019", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.792", | |
| :devY_AA "0.018", | |
| :zthresh_X "0.174132680821", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.034", | |
| :meanY_AA "0.043", | |
| :AF "0.00", | |
| :N_AA "188", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "GGACGCGATTCTGAATCCAGAAGGAAAGCGTCTCACTCCGAGATGCTGAC", | |
| :meanTHETA_BB "0.987", | |
| :meanX_AA "1.568", | |
| :zthresh_Y "0.150298030638", | |
| :devTHETA_AA "0.007", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.798", | |
| :meanY_BB "1.327", | |
| :PROBE_B ".", | |
| :devX_AA "0.17", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.205", | |
| :devY_BB "0.112", | |
| :ALLELE_B "G", | |
| :N_AB "65", | |
| :devR_BB "0.108", | |
| :ILLUMINA_POS "1110019", | |
| :meanR_AA "1.611", | |
| :devTHETA_AB "0.026", | |
| :GC_SCORE "0.815", | |
| :devY_AB "0.086", | |
| :meanTHETA_AB "0.43", | |
| :meanTHETA_AA "0.018", | |
| :devX_AB "0.103", | |
| :refSNP "rs11260542", | |
| :meanR_BB "1.354", | |
| :devR_AA "0.174", | |
| :devTHETA_BB "0.017", | |
| :meanX_BB "0.026", | |
| :N_BB "11", | |
| :meanX_AB "0.995"}} | |
| {:ID "rs12092254", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.778", | |
| :GTZ "0/0", | |
| :R "1.075", | |
| :NORMY "1.031", | |
| :BAF "1", | |
| :LRR "0.236", | |
| :GTA "0/0", | |
| :THETA "0.972", | |
| :Y "3437", | |
| :NORMX "0.045", | |
| :X "368"}, | |
| :POS "1113121", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.022", | |
| :devY_AA "0.027", | |
| :zthresh_X "0.17440514897", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.08", | |
| :AF "0.00", | |
| :N_AA "3", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "TGCGTGCAAGACTCTGCATTAAATGGGAGACCTCAGCTCCTTCTCATGGG", | |
| :meanTHETA_BB "0.949", | |
| :meanX_AA "0.854", | |
| :zthresh_Y "0.174798103408", | |
| :devTHETA_AA "0.021", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.586", | |
| :meanY_BB "0.851", | |
| :PROBE_B ".", | |
| :devX_AA "0.095", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.122", | |
| :devY_BB "0.094", | |
| :ALLELE_B "G*", | |
| :N_AB "64", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1113121", | |
| :meanR_AA "0.934", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.777", | |
| :devY_AB "0.061", | |
| :meanTHETA_AB "0.592", | |
| :meanTHETA_AA "0.06", | |
| :devX_AB "0.048", | |
| :refSNP "rs12092254", | |
| :meanR_BB "0.92", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.015", | |
| :meanX_BB "0.068", | |
| :N_BB "197", | |
| :meanX_AB "0.437"}} | |
| {:ID "rs11260549", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.948", | |
| :GTZ "0/0", | |
| :R "1.279", | |
| :NORMY "1.247", | |
| :BAF "1", | |
| :LRR "0.099", | |
| :GTA "0/0", | |
| :THETA "0.984", | |
| :Y "4157", | |
| :NORMX "0.032", | |
| :X "312"}, | |
| :POS "1121794", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.34", | |
| :devY_AA "0.02", | |
| :zthresh_X "0.141118423915", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.026", | |
| :AF "0.00", | |
| :N_AA "41", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "AATAAAACTGTGTCCACCAGCTGATGGCAAAATATGGTCCATCCATATGA", | |
| :meanTHETA_BB "0.98", | |
| :meanX_AA "1.143", | |
| :zthresh_Y "0.16130030113", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.72", | |
| :meanY_BB "1.159", | |
| :PROBE_B ".", | |
| :devX_AA "0.1", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.119", | |
| :devY_BB "0.098", | |
| :ALLELE_B "G*", | |
| :N_AB "51", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1121794", | |
| :meanR_AA "1.169", | |
| :devTHETA_AB "0.029", | |
| :GC_SCORE "0.914", | |
| :devY_AB "0.062", | |
| :meanTHETA_AB "0.547", | |
| :meanTHETA_AA "0.014", | |
| :devX_AB "0.056", | |
| :refSNP "rs11260549", | |
| :meanR_BB "1.196", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.037", | |
| :N_BB "172", | |
| :meanX_AB "0.62"}} | |
| {:ID "rs10907175", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.821", | |
| :GTZ "0/0", | |
| :R "0.894", | |
| :NORMY "0.058", | |
| :BAF "0", | |
| :LRR "-0.063", | |
| :GTA "0/0", | |
| :THETA "0.044", | |
| :Y "223", | |
| :NORMX "0.835", | |
| :X "5066"}, | |
| :POS "1130727", | |
| :ALT "C", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.127", | |
| :devY_AA "0.016", | |
| :zthresh_X "0.179069096673", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.032", | |
| :meanY_AA "0.069", | |
| :AF "0.00", | |
| :N_AA "188", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "TTTCTTTCTGTTCCTCAGACTAAATAATCTCAATTGGCCTATCTGCAAAC", | |
| :meanTHETA_BB "0.967", | |
| :meanX_AA "0.867", | |
| :zthresh_Y "0.164881985975", | |
| :devTHETA_AA "0.012", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.628", | |
| :meanY_BB "1.019", | |
| :PROBE_B ".", | |
| :devX_AA "0.094", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.1", | |
| :ALLELE_B "C", | |
| :N_AB "72", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1130727", | |
| :meanR_AA "0.936", | |
| :devTHETA_AB "0.042", | |
| :GC_SCORE "0.804", | |
| :devY_AB "0.067", | |
| :meanTHETA_AB "0.572", | |
| :meanTHETA_AA "0.05", | |
| :devX_AB "0.058", | |
| :refSNP "rs10907175", | |
| :meanR_BB "1.073", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.021", | |
| :meanX_BB "0.054", | |
| :N_BB "3", | |
| :meanX_AB "0.499"}} | |
| {:ID "rs3819001", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.874", | |
| :GTZ "0/0", | |
| :R "0.869", | |
| :NORMY "0.071", | |
| :BAF "0.007", | |
| :LRR "0.13", | |
| :GTA "0/0", | |
| :THETA "0.057", | |
| :Y "264", | |
| :NORMX "0.798", | |
| :X "4839"}, | |
| :POS "1138913", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.768", | |
| :devY_AA "0.017", | |
| :zthresh_X "0.177890071494", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.016", | |
| :meanY_AA "0.059", | |
| :AF "0.00", | |
| :N_AA "165", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "AGCACCCAGCATGCATCCACTCAGGTCACTGGACAAGTGTTTATTGAAGG", | |
| :meanTHETA_BB "0.949", | |
| :meanX_AA "0.735", | |
| :zthresh_Y "0.161264383469", | |
| :devTHETA_AA "0.014", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.355", | |
| :meanY_BB "0.569", | |
| :PROBE_B ".", | |
| :devX_AA "0.094", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.094", | |
| :ALLELE_B "C", | |
| :N_AB "82", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1138913", | |
| :meanR_AA "0.794", | |
| :devTHETA_AB "0.029", | |
| :GC_SCORE "0.842", | |
| :devY_AB "0.049", | |
| :meanTHETA_AB "0.452", | |
| :meanTHETA_AA "0.051", | |
| :devX_AB "0.057", | |
| :refSNP "rs3819001", | |
| :meanR_BB "0.614", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.017", | |
| :meanX_BB "0.046", | |
| :N_BB "17", | |
| :meanX_AB "0.413"}} | |
| {:ID "rs3813199", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.719", | |
| :GTZ "0/0", | |
| :R "1.484", | |
| :NORMY "1.329", | |
| :BAF "0.973", | |
| :LRR "0.202", | |
| :GTA "0/0", | |
| :THETA "0.926", | |
| :Y "4434", | |
| :NORMX "0.155", | |
| :X "1066"}, | |
| :POS "1158277", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.655", | |
| :devY_AA "0.043", | |
| :zthresh_X "0.243111773619", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.114", | |
| :AF "0.00", | |
| :N_AA "6", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "CACGTGTGCACACAGCGGGTGTGAGGGCGCACTCACCTGCATGTACTCAC", | |
| :meanTHETA_BB "0.956", | |
| :meanX_AA "1.55", | |
| :zthresh_Y "0.190791115951", | |
| :devTHETA_AA "0.019", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.707", | |
| :meanY_BB "1.187", | |
| :PROBE_B ".", | |
| :devX_AA "0.147", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.158", | |
| :devY_BB "0.095", | |
| :ALLELE_B "G*", | |
| :N_AB "76", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1158277", | |
| :meanR_AA "1.664", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.743", | |
| :devY_AB "0.073", | |
| :meanTHETA_AB "0.408", | |
| :meanTHETA_AA "0.047", | |
| :devX_AB "0.093", | |
| :refSNP "rs3813199", | |
| :meanR_BB "1.269", | |
| :devR_AA "0.151", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.083", | |
| :N_BB "181", | |
| :meanX_AB "0.948"}} | |
| {:ID "rs7515488", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.833", | |
| :GTZ "0/0", | |
| :R "0.78", | |
| :NORMY "0.714", | |
| :BAF "0.99", | |
| :LRR "0.042", | |
| :GTA "0/0", | |
| :THETA "0.942", | |
| :Y "2385", | |
| :NORMX "0.066", | |
| :X "465"}, | |
| :POS "1163804", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.918", | |
| :devY_AA "0.025", | |
| :zthresh_X "0.161704910747", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.083", | |
| :AF "0.00", | |
| :N_AA "13", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "GGCCCGGCGCCCCCCACCGCGCAAAGCCAGGATAGGAACACACAGGCGAG", | |
| :meanTHETA_BB "0.952", | |
| :meanX_AA "0.83", | |
| :zthresh_Y "0.167413536143", | |
| :devTHETA_AA "0.019", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.424", | |
| :meanY_BB "0.701", | |
| :PROBE_B ".", | |
| :devX_AA "0.094", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.116", | |
| :devY_BB "0.108", | |
| :ALLELE_B "C*", | |
| :N_AB "73", | |
| :devR_BB "0.115", | |
| :ILLUMINA_POS "1163804", | |
| :meanR_AA "0.913", | |
| :devTHETA_AB "0.035", | |
| :GC_SCORE "0.812", | |
| :devY_AB "0.053", | |
| :meanTHETA_AB "0.452", | |
| :meanTHETA_AA "0.063", | |
| :devX_AB "0.059", | |
| :refSNP "rs7515488", | |
| :meanR_BB "0.754", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.02", | |
| :meanX_BB "0.053", | |
| :N_BB "177", | |
| :meanX_AB "0.494"}} | |
| {:ID "rs4018608", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.755", | |
| :GTZ "0/0", | |
| :R "1.869", | |
| :NORMY "0.156", | |
| :BAF "0.011", | |
| :LRR "0.017", | |
| :GTA "0/0", | |
| :THETA "0.058", | |
| :Y "570", | |
| :NORMX "1.713", | |
| :X "10398"}, | |
| :POS "1203938", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.008", | |
| :devY_AA "0.031", | |
| :zthresh_X "0.211930185719", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.027", | |
| :meanY_AA "0.131", | |
| :AF "0.00", | |
| :N_AA "138", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "TGGCCTGTTCACCTGTGGCCCCTTCTACCAGGAAGACAGCTGCTCTGCCC", | |
| :meanTHETA_BB "0.956", | |
| :meanX_AA "1.713", | |
| :zthresh_Y "0.319471337832", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.963", | |
| :meanY_BB "1.436", | |
| :PROBE_B ".", | |
| :devX_AA "0.154", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.177", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C", | |
| :N_AB "78", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1203938", | |
| :meanR_AA "1.844", | |
| :devTHETA_AB "0.021", | |
| :GC_SCORE "0.763", | |
| :devY_AB "0.085", | |
| :meanTHETA_AB "0.474", | |
| :meanTHETA_AA "0.049", | |
| :devX_AB "0.091", | |
| :refSNP "rs4018608", | |
| :meanR_BB "1.534", | |
| :devR_AA "0.163", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.098", | |
| :N_BB "47", | |
| :meanX_AB "1.045"}} | |
| {:ID "rs3737721", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.738", | |
| :GTZ "0/0", | |
| :R "2.131", | |
| :NORMY "0.278", | |
| :BAF "0.038", | |
| :LRR "0.101", | |
| :GTA "0/0", | |
| :THETA "0.095", | |
| :Y "979", | |
| :NORMX "1.854", | |
| :X "11264"}, | |
| :POS "1227897", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.992", | |
| :devY_AA "0.028", | |
| :zthresh_X "0.22728436359", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.027", | |
| :meanY_AA "0.189", | |
| :AF "0.00", | |
| :N_AA "157", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "CCAAGCTCACACAGGGAGAGGGGCAAGAATCAATTCTGTTCTTCAGGGTC", | |
| :meanTHETA_BB "0.957", | |
| :meanX_AA "1.797", | |
| :zthresh_Y "0.369823443328", | |
| :devTHETA_AA "0.01", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.886", | |
| :meanY_BB "1.363", | |
| :PROBE_B ".", | |
| :devX_AA "0.134", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.153", | |
| :devY_BB "0.097", | |
| :ALLELE_B "G", | |
| :N_AB "77", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1227897", | |
| :meanR_AA "1.986", | |
| :devTHETA_AB "0.02", | |
| :GC_SCORE "0.753", | |
| :devY_AB "0.072", | |
| :meanTHETA_AB "0.43", | |
| :meanTHETA_AA "0.067", | |
| :devX_AB "0.087", | |
| :refSNP "rs3737721", | |
| :meanR_BB "1.455", | |
| :devR_AA "0.145", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.092", | |
| :N_BB "29", | |
| :meanX_AB "1.106"}} | |
| {:ID "rs3845293", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.793", | |
| :GTZ "1/1", | |
| :R "1.501", | |
| :NORMY "1.312", | |
| :BAF "0.952", | |
| :LRR "0.116", | |
| :GTA "1/1", | |
| :THETA "0.909", | |
| :Y "4377", | |
| :NORMX "0.189", | |
| :X "1271"}, | |
| :POS "1258246", | |
| :ALT "C", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.648", | |
| :devY_AA "0.025", | |
| :zthresh_X "0.303031702182", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.021", | |
| :meanY_AA "0.084", | |
| :AF "1.00", | |
| :N_AA "43", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "TATTCTCAAGGTCACCTCAGCCAAGGTATCATCAAAGCCGAAGTCCTGTT", | |
| :meanTHETA_BB "0.948", | |
| :meanX_AA "1.242", | |
| :zthresh_Y "0.208196948226", | |
| :devTHETA_AA "0.013", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.878", | |
| :meanY_BB "1.253", | |
| :PROBE_B ".", | |
| :devX_AA "0.136", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.188", | |
| :devY_BB "0.094", | |
| :ALLELE_B "C", | |
| :N_AB "75", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1258246", | |
| :meanR_AA "1.325", | |
| :devTHETA_AB "0.037", | |
| :GC_SCORE "0.785", | |
| :devY_AB "0.09", | |
| :meanTHETA_AB "0.542", | |
| :meanTHETA_AA "0.043", | |
| :devX_AB "0.083", | |
| :refSNP "rs3845293", | |
| :meanR_BB "1.357", | |
| :devR_AA "0.143", | |
| :devTHETA_BB "0.011", | |
| :meanX_BB "0.103", | |
| :N_BB "145", | |
| :meanX_AB "0.77"}} | |
| {:ID "rs307354", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.902", | |
| :GTZ "1/1", | |
| :R "0.956", | |
| :NORMY "0.042", | |
| :BAF "0", | |
| :LRR "-0.028", | |
| :GTA "1/1", | |
| :THETA "0.029", | |
| :Y "626", | |
| :NORMX "0.914", | |
| :X "6654"}, | |
| :POS "1264539", | |
| :ALT "C", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.016", | |
| :devY_AA "0.016", | |
| :zthresh_X "0.175984260808", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.05", | |
| :AF "1.00", | |
| :N_AA "192", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "C", | |
| :PROBE_A "CCAGAGAGGTCCCATCACTATGCCTGTTGTACAGGTGAGACAAGAGAGAC", | |
| :meanTHETA_BB "0.957", | |
| :meanX_AA "0.925", | |
| :zthresh_Y "0.159212644366", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.482", | |
| :meanY_BB "0.805", | |
| :PROBE_B "CCAGAGAGGTCCCATCACTATGCCTGTTGTACAGGTGAGACAAGAGAGAG", | |
| :devX_AA "0.096", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.096", | |
| :ALLELE_B "G*", | |
| :N_AB "63", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1264539", | |
| :meanR_AA "0.975", | |
| :devTHETA_AB "0.03", | |
| :GC_SCORE "0.865", | |
| :devY_AB "0.053", | |
| :meanTHETA_AB "0.468", | |
| :meanTHETA_AA "0.034", | |
| :devX_AB "0.058", | |
| :refSNP "rs307354", | |
| :meanR_BB "0.86", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.018", | |
| :meanX_BB "0.055", | |
| :N_BB "8", | |
| :meanX_AB "0.534"}} | |
| {:ID "rs307380", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.81", | |
| :GTZ "1/1", | |
| :R "0.636", | |
| :NORMY "0.045", | |
| :BAF "0", | |
| :LRR "0.331", | |
| :GTA "1/1", | |
| :THETA "0.048", | |
| :Y "171", | |
| :NORMX "0.591", | |
| :X "3585"}, | |
| :POS "1287127", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.507", | |
| :devY_AA "0.018", | |
| :zthresh_X "0.1702240149", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.046", | |
| :AF "1.00", | |
| :N_AA "182", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "CAGGCTTCCTCCCTCCCTGGGGCCTCAACAGATAGCCCCTCTTAGGTCTT", | |
| :meanTHETA_BB "0.921", | |
| :meanX_AA "0.46", | |
| :zthresh_Y "0.128233589318", | |
| :devTHETA_AA "0.024", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.251", | |
| :meanY_BB "0.423", | |
| :PROBE_B ".", | |
| :devX_AA "0.092", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.09", | |
| :ALLELE_B "G*", | |
| :N_AB "74", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1287127", | |
| :meanR_AA "0.506", | |
| :devTHETA_AB "0.028", | |
| :GC_SCORE "0.796", | |
| :devY_AB "0.051", | |
| :meanTHETA_AB "0.495", | |
| :meanTHETA_AA "0.063", | |
| :devX_AB "0.052", | |
| :refSNP "rs307380", | |
| :meanR_BB "0.475", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.022", | |
| :meanX_BB "0.052", | |
| :N_BB "8", | |
| :meanX_AB "0.256"}} | |
| {:ID "rs17160669", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.728", | |
| :GTZ "0/0", | |
| :R "1.638", | |
| :NORMY "1.487", | |
| :BAF "0.981", | |
| :LRR "0.092", | |
| :GTA "0/0", | |
| :THETA "0.936", | |
| :Y "4957", | |
| :NORMX "0.151", | |
| :X "1059"}, | |
| :POS "1305561", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.028", | |
| :devY_AA "0.027", | |
| :zthresh_X "0.235636465806", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.164", | |
| :AF "0.00", | |
| :N_AA "71", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "GAATTAGCCATTTCATACGCGCCGAGCCTAAGTACAGAGTTTAACTTGCC", | |
| :meanTHETA_BB "0.954", | |
| :meanX_AA "1.679", | |
| :zthresh_Y "0.194243679254", | |
| :devTHETA_AA "0.01", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.98", | |
| :meanY_BB "1.414", | |
| :PROBE_B ".", | |
| :devX_AA "0.124", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.15", | |
| :devY_BB "0.096", | |
| :ALLELE_B "C*", | |
| :N_AB "84", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1305561", | |
| :meanR_AA "1.842", | |
| :devTHETA_AB "0.027", | |
| :GC_SCORE "0.748", | |
| :devY_AB "0.077", | |
| :meanTHETA_AB "0.479", | |
| :meanTHETA_AA "0.062", | |
| :devX_AB "0.081", | |
| :refSNP "rs17160669", | |
| :meanR_BB "1.517", | |
| :devR_AA "0.133", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.103", | |
| :N_BB "109", | |
| :meanX_AB "1.048"}} | |
| {:ID "rs1240707", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.942", | |
| :GTZ "0/0", | |
| :R "1.168", | |
| :NORMY "1.133", | |
| :BAF "1", | |
| :LRR "0.112", | |
| :GTA "0/0", | |
| :THETA "0.98", | |
| :Y "3776", | |
| :NORMX "0.035", | |
| :X "320"}, | |
| :POS "1335302", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.245", | |
| :devY_AA "0.025", | |
| :zthresh_X "0.14858413778", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.042", | |
| :AF "0.00", | |
| :N_AA "16", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "GATGCGTATTAACGCCAGACTCCTGCAAAGTCTTGCCTTCAACACTCAGC", | |
| :meanTHETA_BB "0.976", | |
| :meanX_AA "1.109", | |
| :zthresh_Y "0.16339999249", | |
| :devTHETA_AA "0.015", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.66", | |
| :meanY_BB "1.042", | |
| :PROBE_B ".", | |
| :devX_AA "0.108", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.152", | |
| :devY_BB "0.098", | |
| :ALLELE_B "C*", | |
| :N_AB "79", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1335302", | |
| :meanR_AA "1.151", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.907", | |
| :devY_AB "0.063", | |
| :meanTHETA_AB "0.538", | |
| :meanTHETA_AA "0.024", | |
| :devX_AB "0.057", | |
| :refSNP "rs1240707", | |
| :meanR_BB "1.082", | |
| :devR_AA "0.109", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.04", | |
| :N_BB "169", | |
| :meanX_AB "0.585"}} | |
| {:ID "rs1240708", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.78", | |
| :GTZ "0/0", | |
| :R "2.832", | |
| :NORMY "0.051", | |
| :BAF "0.004", | |
| :LRR "0.127", | |
| :GTA "0/0", | |
| :THETA "0.012", | |
| :Y "251", | |
| :NORMX "2.781", | |
| :X "16860"}, | |
| :POS "1335790", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.896", | |
| :devY_AA "0.038", | |
| :zthresh_X "0.168330337714", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.036", | |
| :AF "0.00", | |
| :N_AA "60", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "GTGAGGAGCAATGGTGGCTTCTGAATTTGAGCCCGTCTGAGCTGGGCAGT", | |
| :meanTHETA_BB "0.983", | |
| :meanX_AA "2.554", | |
| :zthresh_Y "0.127596457786", | |
| :devTHETA_AA "0.009", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "1.094", | |
| :meanY_BB "1.784", | |
| :PROBE_B ".", | |
| :devX_AA "0.295", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.389", | |
| :devY_BB "0.132", | |
| :ALLELE_B "G", | |
| :N_AB "53", | |
| :devR_BB "0.134", | |
| :ILLUMINA_POS "1335790", | |
| :meanR_AA "2.59", | |
| :devTHETA_AB "0.022", | |
| :GC_SCORE "0.778", | |
| :devY_AB "0.124", | |
| :meanTHETA_AB "0.347", | |
| :meanTHETA_AA "0.009", | |
| :devX_AB "0.192", | |
| :refSNP "rs1240708", | |
| :meanR_BB "1.832", | |
| :devR_AA "0.297", | |
| :devTHETA_BB "0.007", | |
| :meanX_BB "0.049", | |
| :N_BB "151", | |
| :meanX_AB "1.802"}} | |
| {:ID "rs873927", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.923", | |
| :GTZ "0/0", | |
| :R "1.123", | |
| :NORMY "0.078", | |
| :BAF "0.021", | |
| :LRR "-0.012", | |
| :GTA "0/0", | |
| :THETA "0.048", | |
| :Y "295", | |
| :NORMX "1.045", | |
| :X "6339"}, | |
| :POS "1366830", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.204", | |
| :devY_AA "0.018", | |
| :zthresh_X "0.177755791207", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.049", | |
| :AF "0.00", | |
| :N_AA "55", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "CCAACTTTTGCCCAGCATGGTGTCCCTGACCGAAACCCCTCCACTTCAGG", | |
| :meanTHETA_BB "0.968", | |
| :meanX_AA "1.081", | |
| :zthresh_Y "0.165025051877", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.581", | |
| :meanY_BB "0.93", | |
| :PROBE_B ".", | |
| :devX_AA "0.097", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.125", | |
| :devY_BB "0.097", | |
| :ALLELE_B "G", | |
| :N_AB "43", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1366830", | |
| :meanR_AA "1.13", | |
| :devTHETA_AB "0.026", | |
| :GC_SCORE "0.885", | |
| :devY_AB "0.054", | |
| :meanTHETA_AB "0.478", | |
| :meanTHETA_AA "0.029", | |
| :devX_AB "0.057", | |
| :refSNP "rs873927", | |
| :meanR_BB "0.977", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.047", | |
| :N_BB "165", | |
| :meanX_AB "0.623"}} | |
| {:ID "rs36044796", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.801", | |
| :GTZ "0/0", | |
| :R "1.44", | |
| :NORMY "1.341", | |
| :BAF "0.986", | |
| :LRR "0.033", | |
| :GTA "0/0", | |
| :THETA "0.953", | |
| :Y "4470", | |
| :NORMX "0.099", | |
| :X "730"}, | |
| :POS "1388268", | |
| :ALT "A", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.044", | |
| :devY_AA "0.02", | |
| :zthresh_X "0.201874799499", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.021", | |
| :meanY_AA "0.032", | |
| :AF "0.00", | |
| :N_AA "167", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "AAGGCGACCCTGACTCCATTTTGCAAAAACCCTCTTTATTCCTCAGAAAA", | |
| :meanTHETA_BB "0.969", | |
| :meanX_AA "1.89", | |
| :zthresh_Y "0.178926619549", | |
| :devTHETA_AA "0.007", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.824", | |
| :meanY_BB "1.325", | |
| :PROBE_B ".", | |
| :devX_AA "0.193", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.19", | |
| :devY_BB "0.098", | |
| :ALLELE_B "C*", | |
| :N_AB "34", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1388268", | |
| :meanR_AA "1.923", | |
| :devTHETA_AB "0.022", | |
| :GC_SCORE "0.791", | |
| :devY_AB "0.087", | |
| :meanTHETA_AB "0.378", | |
| :meanTHETA_AA "0.011", | |
| :devX_AB "0.122", | |
| :refSNP "rs1627833", | |
| :meanR_BB "1.39", | |
| :devR_AA "0.195", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.064", | |
| :N_BB "63", | |
| :meanX_AB "1.22"}} | |
| {:ID "rs819980", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.896", | |
| :GTZ "0/0", | |
| :R "1.234", | |
| :NORMY "0.105", | |
| :BAF "0.012", | |
| :LRR "0.149", | |
| :GTA "0/0", | |
| :THETA "0.059", | |
| :Y "387", | |
| :NORMX "1.129", | |
| :X "6849"}, | |
| :POS "1425700", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.127", | |
| :devY_AA "0.019", | |
| :zthresh_X "0.188962274761", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.081", | |
| :AF "0.00", | |
| :N_AA "98", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "CTGGCCAGCAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCAT", | |
| :meanTHETA_BB "0.962", | |
| :meanX_AA "1.032", | |
| :zthresh_Y "0.215076142227", | |
| :devTHETA_AA "0.012", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.523", | |
| :meanY_BB "0.88", | |
| :PROBE_B ".", | |
| :devX_AA "0.094", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.116", | |
| :devY_BB "0.096", | |
| :ALLELE_B "C", | |
| :N_AB "70", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1425700", | |
| :meanR_AA "1.113", | |
| :devTHETA_AB "0.029", | |
| :GC_SCORE "0.86", | |
| :devY_AB "0.053", | |
| :meanTHETA_AB "0.454", | |
| :meanTHETA_AA "0.05", | |
| :devX_AB "0.06", | |
| :refSNP "rs819980", | |
| :meanR_BB "0.933", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.014", | |
| :meanX_BB "0.053", | |
| :N_BB "96", | |
| :meanX_AB "0.604"}} | |
| {:ID "rs6690515", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.823", | |
| :GTZ "0/0", | |
| :R "1.501", | |
| :NORMY "1.455", | |
| :BAF "0.998", | |
| :LRR "0.103", | |
| :GTA "0/0", | |
| :THETA "0.98", | |
| :Y "4849", | |
| :NORMX "0.047", | |
| :X "422"}, | |
| :POS "1447325", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.983", | |
| :devY_AA "0.026", | |
| :zthresh_X "0.141530726012", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.052", | |
| :AF "0.00", | |
| :N_AA "75", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "CGGGAGCCACGCCGGGACAAAATTCCCGAGGGACGTAGGCGAACCCAAGG", | |
| :meanTHETA_BB "0.982", | |
| :meanX_AA "1.886", | |
| :zthresh_Y "0.161768957723", | |
| :devTHETA_AA "0.009", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.834", | |
| :meanY_BB "1.358", | |
| :PROBE_B ".", | |
| :devX_AA "0.167", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.193", | |
| :devY_BB "0.099", | |
| :ALLELE_B "G*", | |
| :N_AB "78", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1447325", | |
| :meanR_AA "1.938", | |
| :devTHETA_AB "0.018", | |
| :GC_SCORE "0.805", | |
| :devY_AB "0.077", | |
| :meanTHETA_AB "0.4", | |
| :meanTHETA_AA "0.017", | |
| :devX_AB "0.102", | |
| :refSNP "rs6690515", | |
| :meanR_BB "1.396", | |
| :devR_AA "0.169", | |
| :devTHETA_BB "0.009", | |
| :meanX_BB "0.038", | |
| :N_BB "109", | |
| :meanX_AB "1.149"}} | |
| {:ID "rs6669795", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.824", | |
| :GTZ "0/0", | |
| :R "1.148", | |
| :NORMY "0.171", | |
| :BAF "0.036", | |
| :LRR "-0.003", | |
| :GTA "0/0", | |
| :THETA "0.11", | |
| :Y "600", | |
| :NORMX "0.977", | |
| :X "5937"}, | |
| :POS "1450947", | |
| :ALT "C", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.31", | |
| :devY_AA "0.019", | |
| :zthresh_X "0.199226983973", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.025", | |
| :meanY_AA "0.121", | |
| :AF "0.00", | |
| :N_AA "146", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "GGCAAGAAAGGGAATGAATAAGAATAGGATACCAGCCAACAAGCTCAGGG", | |
| :meanTHETA_BB "0.944", | |
| :meanX_AA "1.017", | |
| :zthresh_Y "0.245336648776", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.713", | |
| :meanY_BB "1.074", | |
| :PROBE_B ".", | |
| :devX_AA "0.091", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.105", | |
| :devY_BB "0.095", | |
| :ALLELE_B "C", | |
| :N_AB "82", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1450947", | |
| :meanR_AA "1.138", | |
| :devTHETA_AB "0.023", | |
| :GC_SCORE "0.805", | |
| :devY_AB "0.06", | |
| :meanTHETA_AB "0.557", | |
| :meanTHETA_AA "0.075", | |
| :devX_AB "0.052", | |
| :refSNP "rs6669795", | |
| :meanR_BB "1.17", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.015", | |
| :meanX_BB "0.095", | |
| :N_BB "35", | |
| :meanX_AB "0.596"}} | |
| {:ID "rs12032637", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.816", | |
| :GTZ "0/0", | |
| :R "1.714", | |
| :NORMY "0.061", | |
| :BAF "0.004", | |
| :LRR "0.071", | |
| :GTA "0/0", | |
| :THETA "0.023", | |
| :Y "253", | |
| :NORMX "1.653", | |
| :X "10025"}, | |
| :POS "1465382", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.681", | |
| :devY_AA "0.018", | |
| :zthresh_X "0.174548276498", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.023", | |
| :meanY_AA "0.049", | |
| :AF "0.00", | |
| :N_AA "140", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "GCTGTCACACGTTCATTCAAAAGCACTGCTAGATTGAGGAACCAGGTTGT", | |
| :meanTHETA_BB "0.973", | |
| :meanX_AA "1.582", | |
| :zthresh_Y "0.14896503233", | |
| :devTHETA_AA "0.007", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.734", | |
| :meanY_BB "1.152", | |
| :PROBE_B ".", | |
| :devX_AA "0.126", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.164", | |
| :devY_BB "0.099", | |
| :ALLELE_B "G", | |
| :N_AB "80", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1465382", | |
| :meanR_AA "1.632", | |
| :devTHETA_AB "0.028", | |
| :GC_SCORE "0.8", | |
| :devY_AB "0.067", | |
| :meanTHETA_AB "0.419", | |
| :meanTHETA_AA "0.02", | |
| :devX_AB "0.082", | |
| :refSNP "rs12032637", | |
| :meanR_BB "1.2", | |
| :devR_AA "0.129", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.048", | |
| :N_BB "44", | |
| :meanX_AB "0.948"}} | |
| {:ID "rs1571149", | |
| "200557070005_R06C01" {:GT "0/1", | |
| :IGC "0.75", | |
| :GTZ "0/1", | |
| :R "2.224", | |
| :NORMY "1.051", | |
| :BAF "0.512", | |
| :LRR "0.092", | |
| :GTA "0/1", | |
| :THETA "0.465", | |
| :Y "3535", | |
| :NORMX "1.173", | |
| :X "7213"}, | |
| :POS "1474167", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.101", | |
| :devY_AA "0.037", | |
| :zthresh_X "0.232855552469", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.191", | |
| :AF "0.500", | |
| :N_AA "40", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "CATGTCACACGCTTAGCAACACATGCAGCTGTCCTGAACACACATGCCCC", | |
| :meanTHETA_BB "0.962", | |
| :meanX_AA "1.778", | |
| :zthresh_Y "0.403442948303", | |
| :devTHETA_AA "0.014", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.973", | |
| :meanY_BB "1.438", | |
| :PROBE_B ".", | |
| :devX_AA "0.139", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.166", | |
| :devY_BB "0.096", | |
| :ALLELE_B "G", | |
| :N_AB "69", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1474167", | |
| :meanR_AA "1.969", | |
| :devTHETA_AB "0.021", | |
| :GC_SCORE "0.76", | |
| :devY_AB "0.078", | |
| :meanTHETA_AB "0.453", | |
| :meanTHETA_AA "0.068", | |
| :devX_AB "0.088", | |
| :refSNP "rs1571149", | |
| :meanR_BB "1.524", | |
| :devR_AA "0.15", | |
| :devTHETA_BB "0.008", | |
| :meanX_BB "0.086", | |
| :N_BB "154", | |
| :meanX_AB "1.128"}} | |
| {:ID "rs2031709", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.904", | |
| :GTZ "0/0", | |
| :R "1.093", | |
| :NORMY "1.038", | |
| :BAF "1", | |
| :LRR "0.297", | |
| :GTA "0/0", | |
| :THETA "0.966", | |
| :Y "3461", | |
| :NORMX "0.055", | |
| :X "433"}, | |
| :POS "1485984", | |
| :ALT "A", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.923", | |
| :devY_AA "0.024", | |
| :zthresh_X "0.155933273589", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.044", | |
| :AF "0.00", | |
| :N_AA "6", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "TGCCTCGTCCTGACTCCCTGGGCCCGGGACCATCCCTGGCAGGCACTTGA", | |
| :meanTHETA_BB "0.966", | |
| :meanX_AA "0.684", | |
| :zthresh_Y "0.165788177018", | |
| :devTHETA_AA "0.023", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.522", | |
| :meanY_BB "0.844", | |
| :PROBE_B ".", | |
| :devX_AA "0.097", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.11", | |
| :devY_BB "0.096", | |
| :ALLELE_B "C*", | |
| :N_AB "39", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1485984", | |
| :meanR_AA "0.728", | |
| :devTHETA_AB "0.024", | |
| :GC_SCORE "0.867", | |
| :devY_AB "0.059", | |
| :meanTHETA_AB "0.583", | |
| :meanTHETA_AA "0.041", | |
| :devX_AB "0.047", | |
| :refSNP "rs2031709", | |
| :meanR_BB "0.89", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.014", | |
| :meanX_BB "0.046", | |
| :N_BB "219", | |
| :meanX_AB "0.401"}} | |
| {:ID "rs7531530", | |
| "200557070005_R06C01" {:GT "1/0", | |
| :IGC "0.806", | |
| :GTZ "1/0", | |
| :R "1.633", | |
| :NORMY "0.791", | |
| :BAF "0.545", | |
| :LRR "0.197", | |
| :GTA "1/0", | |
| :THETA "0.48", | |
| :Y "2661", | |
| :NORMX "0.842", | |
| :X "5180"}, | |
| :POS "1489670", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.454", | |
| :devY_AA "0.021", | |
| :zthresh_X "0.155618090977", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.064", | |
| :AF "0.500", | |
| :N_AA "102", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "ATGAGGCGGACCCGGACCACTCGGGGGCCCCCACGAAGCTGAGCACGAGA", | |
| :meanTHETA_BB "0.971", | |
| :meanX_AA "1.486", | |
| :zthresh_Y "0.166393215159", | |
| :devTHETA_AA "0.009", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.648", | |
| :meanY_BB "1.08", | |
| :PROBE_B ".", | |
| :devX_AA "0.135", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.172", | |
| :devY_BB "0.115", | |
| :ALLELE_B "C*", | |
| :N_AB "107", | |
| :devR_BB "0.118", | |
| :ILLUMINA_POS "1489670", | |
| :meanR_AA "1.55", | |
| :devTHETA_AB "0.038", | |
| :GC_SCORE "0.794", | |
| :devY_AB "0.076", | |
| :meanTHETA_AB "0.431", | |
| :meanTHETA_AA "0.027", | |
| :devX_AB "0.089", | |
| :refSNP "rs7531530", | |
| :meanR_BB "1.13", | |
| :devR_AA "0.14", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.05", | |
| :N_BB "55", | |
| :meanX_AB "0.806"}} | |
| {:ID "rs6604983", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.822", | |
| :GTZ "0/0", | |
| :R "1.332", | |
| :NORMY "0.11", | |
| :BAF "0.016", | |
| :LRR "-0.138", | |
| :GTA "0/0", | |
| :THETA "0.057", | |
| :Y "405", | |
| :NORMX "1.222", | |
| :X "7413"}, | |
| :POS "1521595", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.693", | |
| :devY_AA "0.021", | |
| :zthresh_X "0.190355673905", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.035", | |
| :meanY_AA "0.089", | |
| :AF "0.00", | |
| :N_AA "204", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "ATAACAGAGAGGGGTTCTCTAGCAGAAAATGATATTTATTCGAAGAGGAC", | |
| :meanTHETA_BB "0.971", | |
| :meanX_AA "1.369", | |
| :zthresh_Y "0.217747720385", | |
| :devTHETA_AA "0.01", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.916", | |
| :meanY_BB "1.31", | |
| :PROBE_B ".", | |
| :devX_AA "0.102", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.136", | |
| :devY_BB "0.108", | |
| :ALLELE_B "G", | |
| :N_AB "51", | |
| :devR_BB "0.106", | |
| :ILLUMINA_POS "1521595", | |
| :meanR_AA "1.458", | |
| :devTHETA_AB "0.024", | |
| :GC_SCORE "0.805", | |
| :devY_AB "0.066", | |
| :meanTHETA_AB "0.552", | |
| :meanTHETA_AA "0.041", | |
| :devX_AB "0.058", | |
| :refSNP "rs6604983", | |
| :meanR_BB "1.37", | |
| :devR_AA "0.106", | |
| :devTHETA_BB "0.018", | |
| :meanX_BB "0.059", | |
| :N_BB "8", | |
| :meanX_AB "0.777"}} | |
| {:ID "rs28635343", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.915", | |
| :GTZ "0/0", | |
| :R "1.363", | |
| :NORMY "1.296", | |
| :BAF "0.997", | |
| :LRR "0.112", | |
| :GTA "0/0", | |
| :THETA "0.967", | |
| :Y "4321", | |
| :NORMX "0.067", | |
| :X "530"}, | |
| :POS "1560103", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.454", | |
| :devY_AA "0.026", | |
| :zthresh_X "0.17279859158", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.047", | |
| :AF "0.00", | |
| :N_AA "17", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "AAGCTCTCAGAAGAAAACCGCCATCTCTTCCCATCTTGAGCCACTTGGGA", | |
| :meanTHETA_BB "0.97", | |
| :meanX_AA "1.158", | |
| :zthresh_Y "0.171865519621", | |
| :devTHETA_AA "0.015", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.782", | |
| :meanY_BB "1.203", | |
| :PROBE_B ".", | |
| :devX_AA "0.109", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.147", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C*", | |
| :N_AB "87", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1560103", | |
| :meanR_AA "1.205", | |
| :devTHETA_AB "0.037", | |
| :GC_SCORE "0.878", | |
| :devY_AB "0.072", | |
| :meanTHETA_AB "0.548", | |
| :meanTHETA_AA "0.026", | |
| :devX_AB "0.066", | |
| :refSNP "rs28635343", | |
| :meanR_BB "1.261", | |
| :devR_AA "0.11", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.058", | |
| :N_BB "158", | |
| :meanX_AB "0.672"}} | |
| {:ID "rs28464684", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.886", | |
| :GTZ "1/1", | |
| :R "0.721", | |
| :NORMY "0.667", | |
| :BAF "1", | |
| :LRR "0.148", | |
| :GTA "1/1", | |
| :THETA "0.949", | |
| :Y "2228", | |
| :NORMX "0.054", | |
| :X "387"}, | |
| :POS "1566160", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.782", | |
| :devY_AA "0.021", | |
| :zthresh_X "0.162683656174", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.041", | |
| :AF "1.00", | |
| :N_AA "11", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "CTCGGGTCCAGACTCCCGCCCGGACTGCGGCCTTCGGGCCAGGACACCCT", | |
| :meanTHETA_BB "0.944", | |
| :meanX_AA "0.76", | |
| :zthresh_Y "0.168729825548", | |
| :devTHETA_AA "0.018", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.351", | |
| :meanY_BB "0.599", | |
| :PROBE_B ".", | |
| :devX_AA "0.097", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.093", | |
| :ALLELE_B "C", | |
| :N_AB "52", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1566160", | |
| :meanR_AA "0.801", | |
| :devTHETA_AB "0.033", | |
| :GC_SCORE "0.851", | |
| :devY_AB "0.049", | |
| :meanTHETA_AB "0.436", | |
| :meanTHETA_AA "0.034", | |
| :devX_AB "0.059", | |
| :refSNP "rs28464684", | |
| :meanR_BB "0.652", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.017", | |
| :meanX_BB "0.053", | |
| :N_BB "199", | |
| :meanX_AB "0.431"}} | |
| {:ID "rs909823", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.845", | |
| :GTZ "1/1", | |
| :R "1.324", | |
| :NORMY "1.279", | |
| :BAF "1", | |
| :LRR "0.259", | |
| :GTA "1/1", | |
| :THETA "0.978", | |
| :Y "4265", | |
| :NORMX "0.044", | |
| :X "390"}, | |
| :POS "1647686", | |
| :ALT "C", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.192", | |
| :devY_AA "0.021", | |
| :zthresh_X "0.152814073784", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.016", | |
| :meanY_AA "0.072", | |
| :AF "1.00", | |
| :N_AA "24", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "GTGTCCTGTCACAGCAATGAAGAAGAATTTGGCAATAGAAGTCACATTTG", | |
| :meanTHETA_BB "0.973", | |
| :meanX_AA "0.732", | |
| :zthresh_Y "0.165975583962", | |
| :devTHETA_AA "0.018", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.733", | |
| :meanY_BB "1.062", | |
| :PROBE_B ".", | |
| :devX_AA "0.099", | |
| :ILLUMINA_BUILD "37.1", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.146", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C", | |
| :N_AB "61", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1647686", | |
| :meanR_AA "0.803", | |
| :devTHETA_AB "0.043", | |
| :GC_SCORE "0.82", | |
| :devY_AB "0.078", | |
| :meanTHETA_AB "0.644", | |
| :meanTHETA_AA "0.062", | |
| :devX_AB "0.059", | |
| :refSNP "rs909823", | |
| :meanR_BB "1.107", | |
| :devR_AA "0.106", | |
| :devTHETA_BB "0.009", | |
| :meanX_BB "0.045", | |
| :N_BB "176", | |
| :meanX_AB "0.459"}} | |
| {:ID "rs3817856", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.713", | |
| :GTZ "1/1", | |
| :R "1.956", | |
| :NORMY "0.11", | |
| :BAF "0.007", | |
| :LRR "0.083", | |
| :GTA "1/1", | |
| :THETA "0.038", | |
| :Y "467", | |
| :NORMX "1.845", | |
| :X "11292"}, | |
| :POS "1663831", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.894", | |
| :devY_AA "0.037", | |
| :zthresh_X "0.17737244111", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.092", | |
| :AF "1.00", | |
| :N_AA "32", | |
| :BEADSET_ID "946", | |
| :ALLELE_A "T", | |
| :PROBE_A "TCCGAGACAGGAAAAGTGGCCGCTCTCTCTCACTTTTTCTGGAACTCATG", | |
| :meanTHETA_BB "0.98", | |
| :meanX_AA "1.753", | |
| :zthresh_Y "0.16869639852", | |
| :devTHETA_AA "0.013", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.743", | |
| :meanY_BB "1.397", | |
| :PROBE_B ".", | |
| :devX_AA "0.247", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.199", | |
| :devY_BB "0.224", | |
| :ALLELE_B "C*", | |
| :N_AB "82", | |
| :devR_BB "0.23", | |
| :ILLUMINA_POS "1663831", | |
| :meanR_AA "1.846", | |
| :devTHETA_AB "0.047", | |
| :GC_SCORE "0.74", | |
| :devY_AB "0.124", | |
| :meanTHETA_AB "0.365", | |
| :meanTHETA_AA "0.033", | |
| :devX_AB "0.172", | |
| :refSNP "rs3817856", | |
| :meanR_BB "1.442", | |
| :devR_AA "0.257", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.045", | |
| :N_BB "149", | |
| :meanX_AB "1.151"}} | |
| {:ID "rs1014988", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.845", | |
| :GTZ "0/0", | |
| :R "1.385", | |
| :NORMY "1.292", | |
| :BAF "1", | |
| :LRR "0.331", | |
| :GTA "0/0", | |
| :THETA "0.954", | |
| :Y "4307", | |
| :NORMX "0.093", | |
| :X "690"}, | |
| :POS "1680219", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.471", | |
| :devY_AA "0.024", | |
| :zthresh_X "0.189548355777", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.071", | |
| :AF "0.00", | |
| :N_AA "47", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "AGGAATCAGTTAGGACGCCCTCGCTGTGTGGGAGACTGATGGGTCCAGGC", | |
| :meanTHETA_BB "0.951", | |
| :meanX_AA "1.303", | |
| :zthresh_Y "0.223270464621", | |
| :devTHETA_AA "0.012", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.686", | |
| :meanY_BB "1.025", | |
| :PROBE_B ".", | |
| :devX_AA "0.159", | |
| :ILLUMINA_BUILD "37.1", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.155", | |
| :devY_BB "0.095", | |
| :ALLELE_B "G*", | |
| :N_AB "118", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1680219", | |
| :meanR_AA "1.374", | |
| :devTHETA_AB "0.026", | |
| :GC_SCORE "0.82", | |
| :devY_AB "0.083", | |
| :meanTHETA_AB "0.458", | |
| :meanTHETA_AA "0.035", | |
| :devX_AB "0.093", | |
| :refSNP "rs1014988", | |
| :meanR_BB "1.103", | |
| :devR_AA "0.166", | |
| :devTHETA_BB "0.014", | |
| :meanX_BB "0.079", | |
| :N_BB "95", | |
| :meanX_AB "0.784"}} | |
| {:ID "rs7407", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.867", | |
| :GTZ "0/0", | |
| :R "1.274", | |
| :NORMY "1.183", | |
| :BAF "0.993", | |
| :LRR "0.19", | |
| :GTA "0/0", | |
| :THETA "0.951", | |
| :Y "3764", | |
| :NORMX "0.091", | |
| :X "727"}, | |
| :POS "1684472", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.268", | |
| :devY_AA "0.024", | |
| :zthresh_X "0.193715927659", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.096", | |
| :AF "0.00", | |
| :N_AA "27", | |
| :BEADSET_ID "946", | |
| :ALLELE_A "T", | |
| :PROBE_A "AGGCTGCTGCTCTCCCGTCCCAGCATCAGCATCACTACCTCATGCTACCC", | |
| :meanTHETA_BB "0.957", | |
| :meanX_AA "1.032", | |
| :zthresh_Y "0.232386265685", | |
| :devTHETA_AA "0.015", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.685", | |
| :meanY_BB "1.044", | |
| :PROBE_B ".", | |
| :devX_AA "0.094", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.095", | |
| :ALLELE_B "C*", | |
| :N_AB "106", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1684472", | |
| :meanR_AA "1.128", | |
| :devTHETA_AB "0.026", | |
| :GC_SCORE "0.836", | |
| :devY_AB "0.06", | |
| :meanTHETA_AB "0.551", | |
| :meanTHETA_AA "0.059", | |
| :devX_AB "0.053", | |
| :refSNP "rs7407", | |
| :meanR_BB "1.115", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.071", | |
| :N_BB "131", | |
| :meanX_AB "0.583"}} | |
| {:ID "rs6603811", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.752", | |
| :GTZ "1/1", | |
| :R "0.432", | |
| :NORMY "0.401", | |
| :BAF "1", | |
| :LRR "-0.168", | |
| :GTA "1/1", | |
| :THETA "0.951", | |
| :Y "1343", | |
| :NORMX "0.031", | |
| :X "223"}, | |
| :POS "1706136", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.447", | |
| :devY_AA "0.021", | |
| :zthresh_X "0.149878920169", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.041", | |
| :AF "1.00", | |
| :N_AA "33", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "TTAAAGCAGTTAATATATCAAACAAATGAATTAAGTGTCAGTCCTGACTC", | |
| :meanTHETA_BB "0.934", | |
| :meanX_AA "0.332", | |
| :zthresh_Y "0.164436305872", | |
| :devTHETA_AA "0.037", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.256", | |
| :meanY_BB "0.439", | |
| :PROBE_B ".", | |
| :devX_AA "0.091", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.092", | |
| :ALLELE_B "C", | |
| :N_AB "50", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1706136", | |
| :meanR_AA "0.374", | |
| :devTHETA_AB "0.049", | |
| :GC_SCORE "0.761", | |
| :devY_AB "0.06", | |
| :meanTHETA_AB "0.592", | |
| :meanTHETA_AA "0.079", | |
| :devX_AB "0.046", | |
| :refSNP "rs6603811", | |
| :meanR_BB "0.484", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.024", | |
| :meanX_BB "0.045", | |
| :N_BB "180", | |
| :meanX_AB "0.191"}} | |
| {:ID "rs12041925", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.751", | |
| :GTZ "1/1", | |
| :R "1.336", | |
| :NORMY "1.28", | |
| :BAF "0.996", | |
| :LRR "-0.005", | |
| :GTA "1/1", | |
| :THETA "0.972", | |
| :Y "4266", | |
| :NORMX "0.057", | |
| :X "466"}, | |
| :POS "1707740", | |
| :ALT "G", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.01", | |
| :devY_AA "0.024", | |
| :zthresh_X "0.197650611458", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.033", | |
| :meanY_AA "0.103", | |
| :AF "1.00", | |
| :N_AA "153", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "CTAGCACAAAAACCTGTTTGACTCATAAATCCTTGTAGTGAGGGTGTCCC", | |
| :meanTHETA_BB "0.977", | |
| :meanX_AA "1.836", | |
| :zthresh_Y "0.249898175721", | |
| :devTHETA_AA "0.008", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.825", | |
| :meanY_BB "1.288", | |
| :PROBE_B ".", | |
| :devX_AA "0.14", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.136", | |
| :devY_BB "0.108", | |
| :ALLELE_B "G", | |
| :N_AB "97", | |
| :devR_BB "0.107", | |
| :ILLUMINA_POS "1707740", | |
| :meanR_AA "1.939", | |
| :devTHETA_AB "0.023", | |
| :GC_SCORE "0.761", | |
| :devY_AB "0.071", | |
| :meanTHETA_AB "0.387", | |
| :meanTHETA_AA "0.036", | |
| :devX_AB "0.094", | |
| :refSNP "rs12041925", | |
| :meanR_BB "1.335", | |
| :devR_AA "0.146", | |
| :devTHETA_BB "0.017", | |
| :meanX_BB "0.046", | |
| :N_BB "11", | |
| :meanX_AB "1.185"}} | |
| {:ID "rs742359", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.902", | |
| :GTZ "1/1", | |
| :R "1.154", | |
| :NORMY "0.052", | |
| :BAF "0", | |
| :LRR "0.388", | |
| :GTA "1/1", | |
| :THETA "0.03", | |
| :Y "208", | |
| :NORMX "1.102", | |
| :X "6684"}, | |
| :POS "1715011", | |
| :ALT "A", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.927", | |
| :devY_AA "0.024", | |
| :zthresh_X "0.13542500463", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.016", | |
| :meanY_AA "0.049", | |
| :AF "1.00", | |
| :N_AA "10", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "GCTGGCAGATGGGCACCCTTGGTGGCGTCAGAAACACACCCAGCACCTTG", | |
| :meanTHETA_BB "0.964", | |
| :meanX_AA "0.834", | |
| :zthresh_Y "0.162390166794", | |
| :devTHETA_AA "0.019", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.484", | |
| :meanY_BB "0.798", | |
| :PROBE_B ".", | |
| :devX_AA "0.099", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.123", | |
| :devY_BB "0.096", | |
| :ALLELE_B "C*", | |
| :N_AB "85", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1715011", | |
| :meanR_AA "0.883", | |
| :devTHETA_AB "0.039", | |
| :GC_SCORE "0.865", | |
| :devY_AB "0.06", | |
| :meanTHETA_AB "0.528", | |
| :meanTHETA_AA "0.037", | |
| :devX_AB "0.056", | |
| :refSNP "rs742359", | |
| :meanR_BB "0.843", | |
| :devR_AA "0.101", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.045", | |
| :N_BB "169", | |
| :meanX_AB "0.443"}} | |
| {:ID "rs4648727", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.921", | |
| :GTZ "1/1", | |
| :R "1.13", | |
| :NORMY "0.079", | |
| :BAF "0.014", | |
| :LRR "-0.114", | |
| :GTA "1/1", | |
| :THETA "0.048", | |
| :Y "297", | |
| :NORMX "1.051", | |
| :X "6377"}, | |
| :POS "1776269", | |
| :ALT "A", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.316", | |
| :devY_AA "0.021", | |
| :zthresh_X "0.166239146331", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.063", | |
| :AF "1.00", | |
| :N_AA "40", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "ACTACAAACTTTGGGGTATCTGATTAAAGCCTTGCCGTAAGTGTGGTGCA", | |
| :meanTHETA_BB "0.966", | |
| :meanX_AA "1.157", | |
| :zthresh_Y "0.169532966235", | |
| :devTHETA_AA "0.012", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.647", | |
| :meanY_BB "1.017", | |
| :PROBE_B ".", | |
| :devX_AA "0.097", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C*", | |
| :N_AB "124", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1776269", | |
| :meanR_AA "1.22", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.884", | |
| :devY_AB "0.055", | |
| :meanTHETA_AB "0.489", | |
| :meanTHETA_AA "0.035", | |
| :devX_AB "0.057", | |
| :refSNP "rs4648727", | |
| :meanR_BB "1.072", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.055", | |
| :N_BB "97", | |
| :meanX_AB "0.669"}} | |
| {:ID "rs3855951", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.78", | |
| :GTZ "1/1", | |
| :R "1.288", | |
| :NORMY "0.047", | |
| :BAF "0.011", | |
| :LRR "-0.051", | |
| :GTA "1/1", | |
| :THETA "0.024", | |
| :Y "195", | |
| :NORMX "1.242", | |
| :X "7528"}, | |
| :POS "1804302", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.417", | |
| :devY_AA "0.017", | |
| :zthresh_X "0.168481466407", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.03", | |
| :meanY_AA "0.033", | |
| :AF "1.00", | |
| :N_AA "175", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "TTCTCGGTACTCAACCATCACCAAGCACAGTGTCTTGCTCAAAGTAAGTA", | |
| :meanTHETA_BB "0.894", | |
| :meanX_AA "1.3", | |
| :zthresh_Y "0.125688206251", | |
| :devTHETA_AA "0.009", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.568", | |
| :meanY_BB "0.944", | |
| :PROBE_B ".", | |
| :devX_AA "0.099", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.121", | |
| :devY_BB "0.093", | |
| :ALLELE_B "C*", | |
| :N_AB "59", | |
| :devR_BB "0.104", | |
| :ILLUMINA_POS "1804302", | |
| :meanR_AA "1.333", | |
| :devTHETA_AB "0.019", | |
| :GC_SCORE "0.778", | |
| :devY_AB "0.046", | |
| :meanTHETA_AB "0.375", | |
| :meanTHETA_AA "0.016", | |
| :devX_AB "0.064", | |
| :refSNP "rs3855951", | |
| :meanR_BB "1.103", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.02", | |
| :meanX_BB "0.159", | |
| :N_BB "28", | |
| :meanX_AB "0.849"}} | |
| {:ID "rs7525092", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.768", | |
| :GTZ "1/1", | |
| :R "2.187", | |
| :NORMY "0.102", | |
| :BAF "0.011", | |
| :LRR "-0.038", | |
| :GTA "1/1", | |
| :THETA "0.031", | |
| :Y "401", | |
| :NORMX "2.085", | |
| :X "12649"}, | |
| :POS "1810090", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.359", | |
| :devY_AA "0.051", | |
| :zthresh_X "0.200613552466", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.079", | |
| :AF "1.00", | |
| :N_AA "14", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "ATGTGCCAAGGAGAGGCAGGTGATGGGCAGTGAATAAGAGATGCCAACTT", | |
| :meanTHETA_BB "0.968", | |
| :meanX_AA "2.164", | |
| :zthresh_Y "0.180716502547", | |
| :devTHETA_AA "0.015", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.971", | |
| :meanY_BB "1.499", | |
| :PROBE_B ".", | |
| :devX_AA "0.226", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.224", | |
| :devY_BB "0.1", | |
| :ALLELE_B "C*", | |
| :N_AB "102", | |
| :devR_BB "0.103", | |
| :ILLUMINA_POS "1810090", | |
| :meanR_AA "2.243", | |
| :devTHETA_AB "0.016", | |
| :GC_SCORE "0.771", | |
| :devY_AB "0.099", | |
| :meanTHETA_AB "0.388", | |
| :meanTHETA_AA "0.023", | |
| :devX_AB "0.138", | |
| :refSNP "rs7525092", | |
| :meanR_BB "1.574", | |
| :devR_AA "0.228", | |
| :devTHETA_BB "0.009", | |
| :meanX_BB "0.075", | |
| :N_BB "147", | |
| :meanX_AB "1.388"}} | |
| {:ID "rs16824526", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.839", | |
| :GTZ "0/0", | |
| :R "0.722", | |
| :NORMY "0.059", | |
| :BAF "0.017", | |
| :LRR "-0.052", | |
| :GTA "0/0", | |
| :THETA "0.057", | |
| :Y "221", | |
| :NORMX "0.663", | |
| :X "4022"}, | |
| :POS "1818129", | |
| :ALT "C", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.879", | |
| :devY_AA "0.014", | |
| :zthresh_X "0.170807665212", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.024", | |
| :meanY_AA "0.042", | |
| :AF "0.00", | |
| :N_AA "191", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "CATAATCTCTCCAACCACTCTTAACAAATGCAAACCTGAAATCAGAATGT", | |
| :meanTHETA_BB "0.958", | |
| :meanX_AA "0.702", | |
| :zthresh_Y "0.132819711479", | |
| :devTHETA_AA "0.012", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.498", | |
| :meanY_BB "0.762", | |
| :PROBE_B ".", | |
| :devX_AA "0.095", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C", | |
| :N_AB "69", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1818129", | |
| :meanR_AA "0.744", | |
| :devTHETA_AB "0.03", | |
| :GC_SCORE "0.816", | |
| :devY_AB "0.06", | |
| :meanTHETA_AB "0.585", | |
| :meanTHETA_AA "0.038", | |
| :devX_AB "0.048", | |
| :refSNP "rs16824526", | |
| :meanR_BB "0.812", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.021", | |
| :meanX_BB "0.05", | |
| :N_BB "3", | |
| :meanX_AB "0.38"}} | |
| {:ID "rs2247560", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.915", | |
| :GTZ "0/0", | |
| :R "1.295", | |
| :NORMY "1.248", | |
| :BAF "0.999", | |
| :LRR "0.107", | |
| :GTA "0/0", | |
| :THETA "0.976", | |
| :Y "4159", | |
| :NORMX "0.048", | |
| :X "408"}, | |
| :POS "1846765", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.435", | |
| :devY_AA "0.023", | |
| :zthresh_X "0.146722487153", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.081", | |
| :AF "0.00", | |
| :N_AA "41", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "CCAGGATGGGTCTTCAACAAGAAATCTCACTGGTAAGTGATGACAGCATG", | |
| :meanTHETA_BB "0.977", | |
| :meanX_AA "1.181", | |
| :zthresh_Y "0.163832500769", | |
| :devTHETA_AA "0.012", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.777", | |
| :meanY_BB "1.16", | |
| :PROBE_B ".", | |
| :devX_AA "0.098", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.098", | |
| :ALLELE_B "G*", | |
| :N_AB "111", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1846765", | |
| :meanR_AA "1.262", | |
| :devTHETA_AB "0.024", | |
| :GC_SCORE "0.878", | |
| :devY_AB "0.062", | |
| :meanTHETA_AB "0.553", | |
| :meanTHETA_AA "0.043", | |
| :devX_AB "0.054", | |
| :refSNP "rs2247560", | |
| :meanR_BB "1.203", | |
| :devR_AA "0.102", | |
| :devTHETA_BB "0.011", | |
| :meanX_BB "0.043", | |
| :N_BB "111", | |
| :meanX_AB "0.658"}} | |
| {:ID "rs28710181", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.927", | |
| :GTZ "0/0", | |
| :R "1.329", | |
| :NORMY "1.299", | |
| :BAF "1", | |
| :LRR "0.161", | |
| :GTA "0/0", | |
| :THETA "0.985", | |
| :Y "4128", | |
| :NORMX "0.03", | |
| :X "368"}, | |
| :POS "1847531", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.294", | |
| :devY_AA "0.029", | |
| :zthresh_X "0.181468736202", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.045", | |
| :AF "0.00", | |
| :N_AA "16", | |
| :BEADSET_ID "946", | |
| :ALLELE_A "T", | |
| :PROBE_A "AGCCTGGCAATGGACACCAGGTGAGGCAGGTGAAGGAAGCCGAGAGCAGG", | |
| :meanTHETA_BB "0.975", | |
| :meanX_AA "1.115", | |
| :zthresh_Y "0.170074628329", | |
| :devTHETA_AA "0.017", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.713", | |
| :meanY_BB "1.146", | |
| :PROBE_B ".", | |
| :devX_AA "0.139", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.146", | |
| :devY_BB "0.099", | |
| :ALLELE_B "C*", | |
| :N_AB "53", | |
| :devR_BB "0.102", | |
| :ILLUMINA_POS "1847531", | |
| :meanR_AA "1.16", | |
| :devTHETA_AB "0.028", | |
| :GC_SCORE "0.89", | |
| :devY_AB "0.083", | |
| :meanTHETA_AB "0.565", | |
| :meanTHETA_AA "0.026", | |
| :devX_AB "0.07", | |
| :refSNP "rs28710181", | |
| :meanR_BB "1.191", | |
| :devR_AA "0.142", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.045", | |
| :N_BB "195", | |
| :meanX_AB "0.581"}} | |
| {:ID "rs28508199", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.887", | |
| :GTZ "1/1", | |
| :R "0.895", | |
| :NORMY "0.838", | |
| :BAF "1", | |
| :LRR "0.429", | |
| :GTA "1/1", | |
| :THETA "0.957", | |
| :Y "2798", | |
| :NORMX "0.057", | |
| :X "423"}, | |
| :POS "1852484", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.731", | |
| :devY_AA "0.017", | |
| :zthresh_X "0.173502971947", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.021", | |
| :meanY_AA "0.044", | |
| :AF "1.00", | |
| :N_AA "78", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "AAACTTCAAGCCAGTGACATTGACCCCGCAGTGGCGTTTTGCAGGATTTC", | |
| :meanTHETA_BB "0.956", | |
| :meanX_AA "0.598", | |
| :zthresh_Y "0.146537979693", | |
| :devTHETA_AA "0.017", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.391", | |
| :meanY_BB "0.622", | |
| :PROBE_B ".", | |
| :devX_AA "0.094", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.096", | |
| :ALLELE_B "G", | |
| :N_AB "126", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1852484", | |
| :meanR_AA "0.642", | |
| :devTHETA_AB "0.026", | |
| :GC_SCORE "0.853", | |
| :devY_AB "0.056", | |
| :meanTHETA_AB "0.545", | |
| :meanTHETA_AA "0.047", | |
| :devX_AB "0.049", | |
| :refSNP "rs28508199", | |
| :meanR_BB "0.665", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.022", | |
| :meanX_BB "0.043", | |
| :N_BB "60", | |
| :meanX_AB "0.34"}} | |
| {:ID "rs2250833", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.803", | |
| :GTZ "1/1", | |
| :R "0.763", | |
| :NORMY "0.672", | |
| :BAF "0.986", | |
| :LRR "0.464", | |
| :GTA "1/1", | |
| :THETA "0.914", | |
| :Y "2245", | |
| :NORMX "0.091", | |
| :X "615"}, | |
| :POS "1854321", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.789", | |
| :devY_AA "0.027", | |
| :zthresh_X "0.157386471956", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.078", | |
| :AF "1.00", | |
| :N_AA "2", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "GCTGCCCACCCCACAGCTGCCACAGGAAGTCCGAGAAAAGCCCGGCTGTC", | |
| :meanTHETA_BB "0.93", | |
| :meanX_AA "0.841", | |
| :zthresh_Y "0.167671123303", | |
| :devTHETA_AA "0.021", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.301", | |
| :meanY_BB "0.492", | |
| :PROBE_B ".", | |
| :devX_AA "0.095", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.101", | |
| :devY_BB "0.092", | |
| :ALLELE_B "G", | |
| :N_AB "58", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1854321", | |
| :meanR_AA "0.919", | |
| :devTHETA_AB "0.035", | |
| :GC_SCORE "0.792", | |
| :devY_AB "0.045", | |
| :meanTHETA_AB "0.351", | |
| :meanTHETA_AA "0.059", | |
| :devX_AB "0.066", | |
| :refSNP "rs2250833", | |
| :meanR_BB "0.547", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.025", | |
| :meanX_BB "0.054", | |
| :N_BB "204", | |
| :meanX_AB "0.489"}} | |
| {:ID "rs2803316", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.943", | |
| :GTZ "0/0", | |
| :R "0.909", | |
| :NORMY "0.023", | |
| :BAF "0", | |
| :LRR "-0.2", | |
| :GTA "0/0", | |
| :THETA "0.017", | |
| :Y "107", | |
| :NORMX "0.886", | |
| :X "5367"}, | |
| :POS "1865298", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.216", | |
| :devY_AA "0.018", | |
| :zthresh_X "0.150861122125", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.016", | |
| :meanY_AA "0.028", | |
| :AF "0.00", | |
| :N_AA "50", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "ACGCAGATATTAGAAAAGAGGGTGTGAAAATCAACCATCTAAGCTTCCTT", | |
| :meanTHETA_BB "0.972", | |
| :meanX_AA "1.016", | |
| :zthresh_Y "0.165924211051", | |
| :devTHETA_AA "0.012", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.646", | |
| :meanY_BB "1.019", | |
| :PROBE_B ".", | |
| :devX_AA "0.099", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.097", | |
| :ALLELE_B "G", | |
| :N_AB "128", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1865298", | |
| :meanR_AA "1.044", | |
| :devTHETA_AB "0.023", | |
| :GC_SCORE "0.908", | |
| :devY_AB "0.057", | |
| :meanTHETA_AB "0.54", | |
| :meanTHETA_AA "0.017", | |
| :devX_AB "0.052", | |
| :refSNP "rs2803316", | |
| :meanR_BB "1.065", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.045", | |
| :N_BB "85", | |
| :meanX_AB "0.57"}} | |
| {:ID "rs3820011", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.905", | |
| :GTZ "1/1", | |
| :R "1.436", | |
| :NORMY "0.072", | |
| :BAF "0.009", | |
| :LRR "0.172", | |
| :GTA "1/1", | |
| :THETA "0.034", | |
| :Y "282", | |
| :NORMX "1.364", | |
| :X "8272"}, | |
| :POS "1888193", | |
| :ALT "A", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.366", | |
| :devY_AA "0.029", | |
| :zthresh_X "0.153281789188", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.049", | |
| :AF "1.00", | |
| :N_AA "13", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "CACTCCATGTCCTCTGGCAGCTGTCCCTCGACAAGGAGCTCATTGACTTC", | |
| :meanTHETA_BB "0.97", | |
| :meanX_AA "1.224", | |
| :zthresh_Y "0.166388541194", | |
| :devTHETA_AA "0.016", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.657", | |
| :meanY_BB "1.055", | |
| :PROBE_B ".", | |
| :devX_AA "0.107", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.116", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C*", | |
| :N_AB "106", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1888193", | |
| :meanR_AA "1.273", | |
| :devTHETA_AB "0.023", | |
| :GC_SCORE "0.868", | |
| :devY_AB "0.057", | |
| :meanTHETA_AB "0.476", | |
| :meanTHETA_AA "0.025", | |
| :devX_AB "0.061", | |
| :refSNP "rs3820011", | |
| :meanR_BB "1.105", | |
| :devR_AA "0.107", | |
| :devTHETA_BB "0.01", | |
| :meanX_BB "0.05", | |
| :N_BB "145", | |
| :meanX_AB "0.709"}} | |
| {:ID "rs16824588", | |
| "200557070005_R06C01" {:GT "0/1", | |
| :IGC "0.78", | |
| :GTZ "0/1", | |
| :R "2.282", | |
| :NORMY "1.073", | |
| :BAF "0.53", | |
| :LRR "0.009", | |
| :GTA "0/1", | |
| :THETA "0.462", | |
| :Y "3608", | |
| :NORMX "1.21", | |
| :X "7436"}, | |
| :POS "1900232", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.309", | |
| :devY_AA "0.028", | |
| :zthresh_X "0.200458628679", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.029", | |
| :meanY_AA "0.13", | |
| :AF "0.500", | |
| :N_AA "105", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "CTGTTTCTTCCTCTTTTCCTCCTCAGCCTCCTCTTTCAGAATCCGACTGA", | |
| :meanTHETA_BB "0.963", | |
| :meanX_AA "2.013", | |
| :zthresh_Y "0.258183147082", | |
| :devTHETA_AA "0.009", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "1.028", | |
| :meanY_BB "1.53", | |
| :PROBE_B ".", | |
| :devX_AA "0.18", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.205", | |
| :devY_BB "0.11", | |
| :ALLELE_B "C", | |
| :N_AB "123", | |
| :devR_BB "0.113", | |
| :ILLUMINA_POS "1900232", | |
| :meanR_AA "2.143", | |
| :devTHETA_AB "0.029", | |
| :GC_SCORE "0.777", | |
| :devY_AB "0.1", | |
| :meanTHETA_AB "0.43", | |
| :meanTHETA_AA "0.041", | |
| :devX_AB "0.118", | |
| :refSNP "rs16824588", | |
| :meanR_BB "1.618", | |
| :devR_AA "0.19", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.088", | |
| :N_BB "36", | |
| :meanX_AB "1.282"}} | |
| {:ID "rs3795283", | |
| "200557070005_R06C01" {:GT "1/0", | |
| :IGC "0.64", | |
| :GTZ "1/0", | |
| :R "1.651", | |
| :NORMY "0.505", | |
| :BAF "0.526", | |
| :LRR "0.22", | |
| :GTA "1/0", | |
| :THETA "0.264", | |
| :Y "1717", | |
| :NORMX "1.146", | |
| :X "6993"}, | |
| :POS "1916587", | |
| :ALT "T", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.45", | |
| :devY_AA "0.036", | |
| :zthresh_X "0.182254416929", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.023", | |
| :meanY_AA "0.039", | |
| :AF "0.500", | |
| :N_AA "19", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "TCTCTGGGTTTGTTTATGTTCCTAGGAACTCCAAAATCAGGTTCTTTTTC", | |
| :meanTHETA_BB "0.945", | |
| :meanX_AA "1.634", | |
| :zthresh_Y "0.17431469883", | |
| :devTHETA_AA "0.014", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.393", | |
| :meanY_BB "0.754", | |
| :PROBE_B ".", | |
| :devX_AA "0.144", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.17", | |
| :devY_BB "0.118", | |
| :ALLELE_B "G*", | |
| :N_AB "102", | |
| :devR_BB "0.126", | |
| :ILLUMINA_POS "1916587", | |
| :meanR_AA "1.673", | |
| :devTHETA_AB "0.038", | |
| :GC_SCORE "0.7", | |
| :devY_AB "0.065", | |
| :meanTHETA_AB "0.227", | |
| :meanTHETA_AA "0.015", | |
| :devX_AB "0.117", | |
| :refSNP "rs3795283", | |
| :meanR_BB "0.819", | |
| :devR_AA "0.143", | |
| :devTHETA_BB "0.019", | |
| :meanX_BB "0.065", | |
| :N_BB "143", | |
| :meanX_AB "1.057"}} | |
| {:ID "rs6656398", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.874", | |
| :GTZ "1/1", | |
| :R "1.44", | |
| :NORMY "0.16", | |
| :BAF "0.023", | |
| :LRR "0.339", | |
| :GTA "1/1", | |
| :THETA "0.079", | |
| :Y "573", | |
| :NORMX "1.28", | |
| :X "7772"}, | |
| :POS "1941929", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.324", | |
| :devY_AA "0.03", | |
| :zthresh_X "0.193867952602", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.091", | |
| :AF "1.00", | |
| :N_AA "107", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "GGGACAAGGACCTCTCTGGCTTTCATGCTTAGTGTCGATGGCTGTTTGAC", | |
| :meanTHETA_BB "0.969", | |
| :meanX_AA "1.039", | |
| :zthresh_Y "0.233901310451", | |
| :devTHETA_AA "0.015", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.729", | |
| :meanY_BB "1.099", | |
| :PROBE_B ".", | |
| :devX_AA "0.215", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.265", | |
| :devY_BB "0.137", | |
| :ALLELE_B "G*", | |
| :N_AB "104", | |
| :devR_BB "0.142", | |
| :ILLUMINA_POS "1941929", | |
| :meanR_AA "1.13", | |
| :devTHETA_AB "0.032", | |
| :GC_SCORE "0.841", | |
| :devY_AB "0.132", | |
| :meanTHETA_AB "0.565", | |
| :meanTHETA_AA "0.055", | |
| :devX_AB "0.11", | |
| :refSNP "rs6656398", | |
| :meanR_BB "1.152", | |
| :devR_AA "0.232", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.053", | |
| :N_BB "53", | |
| :meanX_AB "0.594"}} | |
| {:ID "rs13303016", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.605", | |
| :GTZ "1/1", | |
| :R "1.686", | |
| :NORMY "0.241", | |
| :BAF "0.006", | |
| :LRR "0.258", | |
| :GTA "1/1", | |
| :THETA "0.105", | |
| :Y "846", | |
| :NORMX "1.446", | |
| :X "8785"}, | |
| :POS "1946591", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.477", | |
| :devY_AA "0.034", | |
| :zthresh_X "0.220831321638", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.03", | |
| :meanY_AA "0.193", | |
| :AF "1.00", | |
| :N_AA "168", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "GAACAACCTCACAAATACATCAGGAAGGAGGTTTAAATTTAGCGAGCGCC", | |
| :meanTHETA_BB "0.921", | |
| :meanX_AA "1.216", | |
| :zthresh_Y "0.352089188281", | |
| :devTHETA_AA "0.013", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.714", | |
| :meanY_BB "1.047", | |
| :PROBE_B ".", | |
| :devX_AA "0.169", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.222", | |
| :devY_BB "0.093", | |
| :ALLELE_B "G*", | |
| :N_AB "83", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1946591", | |
| :meanR_AA "1.409", | |
| :devTHETA_AB "0.026", | |
| :GC_SCORE "0.682", | |
| :devY_AB "0.099", | |
| :meanTHETA_AB "0.479", | |
| :meanTHETA_AA "0.1", | |
| :devX_AB "0.105", | |
| :refSNP "rs13303016", | |
| :meanR_BB "1.177", | |
| :devR_AA "0.194", | |
| :devTHETA_BB "0.019", | |
| :meanX_BB "0.13", | |
| :N_BB "13", | |
| :meanX_AB "0.763"}} | |
| {:ID "rs2376803", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.762", | |
| :GTZ "1/1", | |
| :R "1.269", | |
| :NORMY "0.149", | |
| :BAF "0", | |
| :LRR "0.452", | |
| :GTA "1/1", | |
| :THETA "0.084", | |
| :Y "532", | |
| :NORMX "1.12", | |
| :X "6803"}, | |
| :POS "1967954", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.233", | |
| :devY_AA "0.025", | |
| :zthresh_X "0.198071413917", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.033", | |
| :meanY_AA "0.108", | |
| :AF "1.00", | |
| :N_AA "134", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "GTGCTAGCACAAAGCAGAGCTGCTGAGAAGCTCCTGGAGAGCTGAGCTGC", | |
| :meanTHETA_BB "0.93", | |
| :meanX_AA "0.82", | |
| :zthresh_Y "0.255223144859", | |
| :devTHETA_AA "0.018", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.76", | |
| :meanY_BB "1.146", | |
| :PROBE_B ".", | |
| :devX_AA "0.11", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.142", | |
| :devY_BB "0.105", | |
| :ALLELE_B "C*", | |
| :N_AB "106", | |
| :devR_BB "0.112", | |
| :ILLUMINA_POS "1967954", | |
| :meanR_AA "0.928", | |
| :devTHETA_AB "0.034", | |
| :GC_SCORE "0.767", | |
| :devY_AB "0.083", | |
| :meanTHETA_AB "0.646", | |
| :meanTHETA_AA "0.084", | |
| :devX_AB "0.058", | |
| :refSNP "rs2376803", | |
| :meanR_BB "1.272", | |
| :devR_AA "0.122", | |
| :devTHETA_BB "0.019", | |
| :meanX_BB "0.126", | |
| :N_BB "24", | |
| :meanX_AB "0.473"}} | |
| {:ID "rs6605074", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.879", | |
| :GTZ "0/0", | |
| :R "1.081", | |
| :NORMY "0.931", | |
| :BAF "0.956", | |
| :LRR "0.033", | |
| :GTA "0/0", | |
| :THETA "0.898", | |
| :Y "3108", | |
| :NORMX "0.15", | |
| :X "999"}, | |
| :POS "1992748", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.284", | |
| :devY_AA "0.034", | |
| :zthresh_X "0.253650651571", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.05", | |
| :AF "0.00", | |
| :N_AA "6", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "CCTCTTGTCTCAACCCTGCCTGGGGGCCTGGGGTCTGCTCTTTCTGTCTA", | |
| :meanTHETA_BB "0.943", | |
| :meanX_AA "1.161", | |
| :zthresh_Y "0.193590120172", | |
| :devTHETA_AA "0.019", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.579", | |
| :meanY_BB "0.949", | |
| :PROBE_B ".", | |
| :devX_AA "0.108", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.122", | |
| :devY_BB "0.093", | |
| :ALLELE_B "C*", | |
| :N_AB "64", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "1992748", | |
| :meanR_AA "1.211", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.851", | |
| :devY_AB "0.055", | |
| :meanTHETA_AB "0.438", | |
| :meanTHETA_AA "0.028", | |
| :devX_AB "0.064", | |
| :refSNP "rs6605074", | |
| :meanR_BB "1.034", | |
| :devR_AA "0.107", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.085", | |
| :N_BB "194", | |
| :meanX_AB "0.705"}} | |
| {:ID "rs6663158", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.835", | |
| :GTZ "0/0", | |
| :R "1.363", | |
| :NORMY "1.291", | |
| :BAF "0.997", | |
| :LRR "-0.03", | |
| :GTA "0/0", | |
| :THETA "0.964", | |
| :Y "4304", | |
| :NORMX "0.072", | |
| :X "561"}, | |
| :POS "2004098", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.952", | |
| :devY_AA "0.027", | |
| :zthresh_X "0.181270598615", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.044", | |
| :AF "0.00", | |
| :N_AA "56", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "TCCTAGAGACAGCAAAGGACTTGTCCCACAGCGAACCTTTCAAATGCAAA", | |
| :meanTHETA_BB "0.968", | |
| :meanX_AA "1.715", | |
| :zthresh_Y "0.176224680745", | |
| :devTHETA_AA "0.01", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.855", | |
| :meanY_BB "1.321", | |
| :PROBE_B ".", | |
| :devX_AA "0.135", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.146", | |
| :devY_BB "0.097", | |
| :ALLELE_B "G*", | |
| :N_AB "90", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2004098", | |
| :meanR_AA "1.759", | |
| :devTHETA_AB "0.019", | |
| :GC_SCORE "0.813", | |
| :devY_AB "0.067", | |
| :meanTHETA_AB "0.422", | |
| :meanTHETA_AA "0.016", | |
| :devX_AB "0.082", | |
| :refSNP "rs6663158", | |
| :meanR_BB "1.388", | |
| :devR_AA "0.135", | |
| :devTHETA_BB "0.011", | |
| :meanX_BB "0.067", | |
| :N_BB "118", | |
| :meanX_AB "1.097"}} | |
| {:ID "rs2803310", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.858", | |
| :GTZ "0/0", | |
| :R "0.917", | |
| :NORMY "0.083", | |
| :BAF "0.004", | |
| :LRR "0.196", | |
| :GTA "0/0", | |
| :THETA "0.063", | |
| :Y "305", | |
| :NORMX "0.834", | |
| :X "5063"}, | |
| :POS "2017297", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.894", | |
| :devY_AA "0.017", | |
| :zthresh_X "0.178886168631", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.069", | |
| :AF "0.00", | |
| :N_AA "69", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "GCCTCTCTGCATCAACACAGTAAGACCGGGGCCTCCCAAACCCACCCATG", | |
| :meanTHETA_BB "0.959", | |
| :meanX_AA "0.731", | |
| :zthresh_Y "0.16402853579", | |
| :devTHETA_AA "0.014", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.462", | |
| :meanY_BB "0.768", | |
| :PROBE_B ".", | |
| :devX_AA "0.093", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.095", | |
| :ALLELE_B "C", | |
| :N_AB "101", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2017297", | |
| :meanR_AA "0.8", | |
| :devTHETA_AB "0.038", | |
| :GC_SCORE "0.83", | |
| :devY_AB "0.058", | |
| :meanTHETA_AB "0.521", | |
| :meanTHETA_AA "0.06", | |
| :devX_AB "0.055", | |
| :refSNP "rs2803310", | |
| :meanR_BB "0.818", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.015", | |
| :meanX_BB "0.05", | |
| :N_BB "94", | |
| :meanX_AB "0.432"}} | |
| {:ID "rs2459994", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.641", | |
| :GTZ "0/0", | |
| :R "1.567", | |
| :NORMY "1.269", | |
| :BAF "0.96", | |
| :LRR "0.211", | |
| :GTA "0/0", | |
| :THETA "0.853", | |
| :Y "4237", | |
| :NORMX "0.298", | |
| :X "1928"}, | |
| :POS "2024064", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.71", | |
| :devY_AA "0.027", | |
| :zthresh_X "0.795970943765", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.05", | |
| :meanY_AA "0.032", | |
| :AF "0.00", | |
| :N_AA "42", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "CTTGAAGCTCCGTGGGTTTGTTTAAGGTATAAATTCATTGAGCTTGAAGA", | |
| :meanTHETA_BB "0.893", | |
| :meanX_AA "1.563", | |
| :zthresh_Y "0.30758098307", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.706", | |
| :meanY_BB "1.132", | |
| :PROBE_B ".", | |
| :devX_AA "0.145", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.166", | |
| :devY_BB "0.099", | |
| :ALLELE_B "C*", | |
| :N_AB "85", | |
| :devR_BB "0.101", | |
| :ILLUMINA_POS "2024064", | |
| :meanR_AA "1.595", | |
| :devTHETA_AB "0.035", | |
| :GC_SCORE "0.701", | |
| :devY_AB "0.077", | |
| :meanTHETA_AB "0.39", | |
| :meanTHETA_AA "0.013", | |
| :devX_AB "0.098", | |
| :refSNP "rs2459994", | |
| :meanR_BB "1.324", | |
| :devR_AA "0.146", | |
| :devTHETA_BB "0.031", | |
| :meanX_BB "0.192", | |
| :N_BB "137", | |
| :meanX_AB "1.005"}} | |
| {:ID "rs884080", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.875", | |
| :GTZ "0/0", | |
| :R "0.572", | |
| :NORMY "0.027", | |
| :BAF "0", | |
| :LRR "0.064", | |
| :GTA "0/0", | |
| :THETA "0.032", | |
| :Y "111", | |
| :NORMX "0.545", | |
| :X "3304"}, | |
| :POS "2026749", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.647", | |
| :devY_AA "0.016", | |
| :zthresh_X "0.15383656973", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.04", | |
| :AF "0.00", | |
| :N_AA "40", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "GAGGACAGCATGGGGCTCTGCCCGCCACTGCCCAGCCACCTCCAAAACCA", | |
| :meanTHETA_BB "0.946", | |
| :meanX_AA "0.51", | |
| :zthresh_Y "0.166160983376", | |
| :devTHETA_AA "0.02", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.381", | |
| :meanY_BB "0.63", | |
| :PROBE_B ".", | |
| :devX_AA "0.094", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.094", | |
| :ALLELE_B "G", | |
| :N_AB "76", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2026749", | |
| :meanR_AA "0.551", | |
| :devTHETA_AB "0.03", | |
| :GC_SCORE "0.843", | |
| :devY_AB "0.061", | |
| :meanTHETA_AB "0.612", | |
| :meanTHETA_AA "0.05", | |
| :devX_AB "0.044", | |
| :refSNP "rs884080", | |
| :meanR_BB "0.684", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.019", | |
| :meanX_BB "0.054", | |
| :N_BB "148", | |
| :meanX_AB "0.266"}} | |
| {:ID "rs7513222", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.782", | |
| :GTZ "0/0", | |
| :R "1.323", | |
| :NORMY "1.239", | |
| :BAF "0.993", | |
| :LRR "0.184", | |
| :GTA "0/0", | |
| :THETA "0.957", | |
| :Y "4132", | |
| :NORMX "0.084", | |
| :X "628"}, | |
| :POS "2027901", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.517", | |
| :devY_AA "0.026", | |
| :zthresh_X "0.177829499135", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.019", | |
| :meanY_AA "0.134", | |
| :AF "0.00", | |
| :N_AA "48", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "GCTGTTTTTACACACTGCTGTGTTAGATCCTCACGAAGTCCGTACAACCG", | |
| :meanTHETA_BB "0.964", | |
| :meanX_AA "1.232", | |
| :zthresh_Y "0.174057659341", | |
| :devTHETA_AA "0.012", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.741", | |
| :meanY_BB "1.097", | |
| :PROBE_B ".", | |
| :devX_AA "0.144", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.213", | |
| :devY_BB "0.118", | |
| :ALLELE_B "G*", | |
| :N_AB "89", | |
| :devR_BB "0.123", | |
| :ILLUMINA_POS "2027901", | |
| :meanR_AA "1.366", | |
| :devTHETA_AB "0.022", | |
| :GC_SCORE "0.779", | |
| :devY_AB "0.082", | |
| :meanTHETA_AB "0.485", | |
| :meanTHETA_AA "0.069", | |
| :devX_AB "0.085", | |
| :refSNP "rs7513222", | |
| :meanR_BB "1.159", | |
| :devR_AA "0.158", | |
| :devTHETA_BB "0.011", | |
| :meanX_BB "0.062", | |
| :N_BB "126", | |
| :meanX_AB "0.776"}} | |
| {:ID "rs10910030", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.698", | |
| :GTZ "1/1", | |
| :R "1.772", | |
| :NORMY "0.181", | |
| :BAF "0.014", | |
| :LRR "-0.031", | |
| :GTA "1/1", | |
| :THETA "0.072", | |
| :Y "652", | |
| :NORMX "1.591", | |
| :X "9660"}, | |
| :POS "2035684", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.953", | |
| :devY_AA "0.026", | |
| :zthresh_X "0.212196960127", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.027", | |
| :meanY_AA "0.156", | |
| :AF "1.00", | |
| :N_AA "94", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "GTTGGACCCCCTTTTTGATGTTCGACTGCTGGAGGTGTTTGAGACGACCC", | |
| :meanTHETA_BB "0.949", | |
| :meanX_AA "1.651", | |
| :zthresh_Y "0.310239458568", | |
| :devTHETA_AA "0.01", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.985", | |
| :meanY_BB "1.418", | |
| :PROBE_B ".", | |
| :devX_AA "0.133", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.172", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C*", | |
| :N_AB "117", | |
| :devR_BB "0.101", | |
| :ILLUMINA_POS "2035684", | |
| :meanR_AA "1.807", | |
| :devTHETA_AB "0.021", | |
| :GC_SCORE "0.731", | |
| :devY_AB "0.079", | |
| :meanTHETA_AB "0.506", | |
| :meanTHETA_AA "0.06", | |
| :devX_AB "0.078", | |
| :refSNP "rs10910030", | |
| :meanR_BB "1.531", | |
| :devR_AA "0.143", | |
| :devTHETA_BB "0.012", | |
| :meanX_BB "0.113", | |
| :N_BB "53", | |
| :meanX_AB "0.968"}} | |
| {:ID "rs12410859", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.911", | |
| :GTZ "0/0", | |
| :R "1.193", | |
| :NORMY "1.15", | |
| :BAF "1", | |
| :LRR "0.037", | |
| :GTA "0/0", | |
| :THETA "0.976", | |
| :Y "3833", | |
| :NORMX "0.043", | |
| :X "371"}, | |
| :POS "2038732", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.347", | |
| :devY_AA "0.029", | |
| :zthresh_X "0.14551351938", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.016", | |
| :meanY_AA "0.065", | |
| :AF "0.00", | |
| :N_AA "9", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "AAAGCAGGTCTGGAGCAGGACCTGCCTCAGGAGAGGGAGGACGCAATCCC", | |
| :meanTHETA_BB "0.976", | |
| :meanX_AA "1.109", | |
| :zthresh_Y "0.163451284245", | |
| :devTHETA_AA "0.017", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.707", | |
| :meanY_BB "1.12", | |
| :PROBE_B ".", | |
| :devX_AA "0.11", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.132", | |
| :devY_BB "0.098", | |
| :ALLELE_B "C*", | |
| :N_AB "75", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2038732", | |
| :meanR_AA "1.175", | |
| :devTHETA_AB "0.035", | |
| :GC_SCORE "0.873", | |
| :devY_AB "0.07", | |
| :meanTHETA_AB "0.532", | |
| :meanTHETA_AA "0.037", | |
| :devX_AB "0.065", | |
| :refSNP "rs12410859", | |
| :meanR_BB "1.163", | |
| :devR_AA "0.113", | |
| :devTHETA_BB "0.009", | |
| :meanX_BB "0.042", | |
| :N_BB "180", | |
| :meanX_AB "0.639"}} | |
| {:ID "rs4648807", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.779", | |
| :GTZ "1/1", | |
| :R "1.611", | |
| :NORMY "1.507", | |
| :BAF "0.999", | |
| :LRR "0.076", | |
| :GTA "1/1", | |
| :THETA "0.956", | |
| :Y "5023", | |
| :NORMX "0.104", | |
| :X "774"}, | |
| :POS "2040898", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.207", | |
| :devY_AA "0.028", | |
| :zthresh_X "0.263417212953", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.025", | |
| :meanY_AA "0.058", | |
| :AF "1.00", | |
| :N_AA "71", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "GGGTTGCAATCCACATGTTTAATATTCACGACCACACCTGATCTCAGGAC", | |
| :meanTHETA_BB "0.958", | |
| :meanX_AA "1.965", | |
| :zthresh_Y "0.198291679349", | |
| :devTHETA_AA "0.009", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.902", | |
| :meanY_BB "1.431", | |
| :PROBE_B ".", | |
| :devX_AA "0.164", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.157", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C", | |
| :N_AB "114", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2040898", | |
| :meanR_AA "2.023", | |
| :devTHETA_AB "0.027", | |
| :GC_SCORE "0.777", | |
| :devY_AB "0.083", | |
| :meanTHETA_AB "0.385", | |
| :meanTHETA_AA "0.019", | |
| :devX_AB "0.109", | |
| :refSNP "rs4648807", | |
| :meanR_BB "1.527", | |
| :devR_AA "0.166", | |
| :devTHETA_BB "0.011", | |
| :meanX_BB "0.096", | |
| :N_BB "77", | |
| :meanX_AB "1.306"}} | |
| {:ID "rs4648808", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.829", | |
| :GTZ "1/1", | |
| :R "1.605", | |
| :NORMY "1.544", | |
| :BAF "1", | |
| :LRR "-0.02", | |
| :GTA "1/1", | |
| :THETA "0.975", | |
| :Y "4909", | |
| :NORMX "0.062", | |
| :X "591"}, | |
| :POS "2040936", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.25", | |
| :devY_AA "0.039", | |
| :zthresh_X "0.262380486615", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.026", | |
| :meanY_AA "0.042", | |
| :AF "1.00", | |
| :N_AA "23", | |
| :BEADSET_ID "946", | |
| :ALLELE_A "T*", | |
| :PROBE_A "TCCTCACTGAATTGTCCTGAGATCAGGTGTGGTCGTGAATATTAAACATG", | |
| :meanTHETA_BB "0.964", | |
| :meanX_AA "1.951", | |
| :zthresh_Y "0.195823718118", | |
| :devTHETA_AA "0.013", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "1.03", | |
| :meanY_BB "1.553", | |
| :PROBE_B ".", | |
| :devX_AA "0.188", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.194", | |
| :devY_BB "0.098", | |
| :ALLELE_B "C", | |
| :N_AB "85", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2040936", | |
| :meanR_AA "1.993", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.809", | |
| :devY_AB "0.097", | |
| :meanTHETA_AB "0.447", | |
| :meanTHETA_AA "0.014", | |
| :devX_AB "0.111", | |
| :refSNP "rs4648808", | |
| :meanR_BB "1.64", | |
| :devR_AA "0.188", | |
| :devTHETA_BB "0.011", | |
| :meanX_BB "0.088", | |
| :N_BB "154", | |
| :meanX_AB "1.219"}} | |
| {:ID "rs424079", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.622", | |
| :GTZ "1/1", | |
| :R "1.514", | |
| :NORMY "0.184", | |
| :BAF "0.058", | |
| :LRR "0.064", | |
| :GTA "1/1", | |
| :THETA "0.087", | |
| :Y "653", | |
| :NORMX "1.331", | |
| :X "8082"}, | |
| :POS "2071340", | |
| :ALT "A", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.297", | |
| :devY_AA "0.023", | |
| :zthresh_X "0.203191296416", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.13", | |
| :AF "1.00", | |
| :N_AA "126", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "TTTGCTGTGAACAACCCACTCCACCACGTGGGGTATAAACCATGGTAGGG", | |
| :meanTHETA_BB "0.945", | |
| :meanX_AA "1.338", | |
| :zthresh_Y "0.265983281518", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.419", | |
| :meanY_BB "0.692", | |
| :PROBE_B ".", | |
| :devX_AA "0.094", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.094", | |
| :ALLELE_B "C*", | |
| :N_AB "105", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2071340", | |
| :meanR_AA "1.469", | |
| :devTHETA_AB "0.026", | |
| :GC_SCORE "0.691", | |
| :devY_AB "0.044", | |
| :meanTHETA_AB "0.283", | |
| :meanTHETA_AA "0.062", | |
| :devX_AB "0.074", | |
| :refSNP "rs424079", | |
| :meanR_BB "0.753", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.018", | |
| :meanX_BB "0.06", | |
| :N_BB "32", | |
| :meanX_AB "0.878"}} | |
| {:ID "rs2257182", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.779", | |
| :GTZ "0/0", | |
| :R "1.759", | |
| :NORMY "0.088", | |
| :BAF "0.015", | |
| :LRR "0.083", | |
| :GTA "0/0", | |
| :THETA "0.034", | |
| :Y "345", | |
| :NORMX "1.671", | |
| :X "10134"}, | |
| :POS "2082566", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.71", | |
| :devY_AA "0.023", | |
| :zthresh_X "0.177058044346", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.023", | |
| :meanY_AA "0.056", | |
| :AF "0.00", | |
| :N_AA "88", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "CACAACAGTGCCATTACCTAACCAGGCACTTTCCAGAACACATCCTGGTC", | |
| :meanTHETA_BB "0.976", | |
| :meanX_AA "1.603", | |
| :zthresh_Y "0.161371559849", | |
| :devTHETA_AA "0.009", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.712", | |
| :meanY_BB "1.173", | |
| :PROBE_B ".", | |
| :devX_AA "0.113", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.142", | |
| :devY_BB "0.107", | |
| :ALLELE_B "C", | |
| :N_AB "110", | |
| :devR_BB "0.109", | |
| :ILLUMINA_POS "2082566", | |
| :meanR_AA "1.659", | |
| :devTHETA_AB "0.035", | |
| :GC_SCORE "0.777", | |
| :devY_AB "0.067", | |
| :meanTHETA_AB "0.395", | |
| :meanTHETA_AA "0.022", | |
| :devX_AB "0.082", | |
| :refSNP "rs2257182", | |
| :meanR_BB "1.218", | |
| :devR_AA "0.114", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.045", | |
| :N_BB "66", | |
| :meanX_AB "0.998"}} | |
| {:ID "rs262643", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.696", | |
| :GTZ "0/0", | |
| :R "1.608", | |
| :NORMY "1.544", | |
| :BAF "0.997", | |
| :LRR "0.127", | |
| :GTA "0/0", | |
| :THETA "0.974", | |
| :Y "5146", | |
| :NORMX "0.064", | |
| :X "537"}, | |
| :POS "2100840", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.31", | |
| :devY_AA "0.054", | |
| :zthresh_X "0.160907766761", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.221", | |
| :AF "0.00", | |
| :N_AA "10", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "CACCAGCCCCTCTCTGCTGCCAGGGTGCTCCTGCTGCTCTTTGCTCTTTG", | |
| :meanTHETA_BB "0.977", | |
| :meanX_AA "2.08", | |
| :zthresh_Y "0.168456609573", | |
| :devTHETA_AA "0.017", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.913", | |
| :meanY_BB "1.417", | |
| :PROBE_B ".", | |
| :devX_AA "0.199", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.234", | |
| :devY_BB "0.107", | |
| :ALLELE_B "C*", | |
| :N_AB "26", | |
| :devR_BB "0.109", | |
| :ILLUMINA_POS "2100840", | |
| :meanR_AA "2.301", | |
| :devTHETA_AB "0.021", | |
| :GC_SCORE "0.73", | |
| :devY_AB "0.093", | |
| :meanTHETA_AB "0.368", | |
| :meanTHETA_AA "0.067", | |
| :devX_AB "0.135", | |
| :refSNP "rs262643", | |
| :meanR_BB "1.468", | |
| :devR_AA "0.213", | |
| :devTHETA_BB "0.008", | |
| :meanX_BB "0.05", | |
| :N_BB "228", | |
| :meanX_AB "1.397"}} | |
| {:ID "rs7512482", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.77", | |
| :GTZ "0/0", | |
| :R "1.295", | |
| :NORMY "0.097", | |
| :BAF "0.008", | |
| :LRR "0.494", | |
| :GTA "0/0", | |
| :THETA "0.052", | |
| :Y "386", | |
| :NORMX "1.198", | |
| :X "7340"}, | |
| :POS "2146966", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.951", | |
| :devY_AA "0.025", | |
| :zthresh_X "0.184385806475", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.023", | |
| :meanY_AA "0.06", | |
| :AF "0.00", | |
| :N_AA "173", | |
| :BEADSET_ID "946", | |
| :ALLELE_A "T*", | |
| :PROBE_A "GAAGGTGGCTGCGGGCAGGTGCCGTGGGTGACTGAAGGGTAGGACCTGCG", | |
| :meanTHETA_BB "0.943", | |
| :meanX_AA "0.859", | |
| :zthresh_Y "0.200710658915", | |
| :devTHETA_AA "0.017", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.475", | |
| :meanY_BB "0.682", | |
| :PROBE_B ".", | |
| :devX_AA "0.187", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.189", | |
| :devY_BB "0.112", | |
| :ALLELE_B "C", | |
| :N_AB "75", | |
| :devR_BB "0.12", | |
| :ILLUMINA_POS "2146966", | |
| :meanR_AA "0.919", | |
| :devTHETA_AB "0.032", | |
| :GC_SCORE "0.772", | |
| :devY_AB "0.102", | |
| :meanTHETA_AB "0.499", | |
| :meanTHETA_AA "0.044", | |
| :devX_AB "0.102", | |
| :refSNP "rs7512482", | |
| :meanR_BB "0.744", | |
| :devR_AA "0.198", | |
| :devTHETA_BB "0.021", | |
| :meanX_BB "0.061", | |
| :N_BB "16", | |
| :meanX_AB "0.476"}} | |
| {:ID "rs2460000", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.925", | |
| :GTZ "0/0", | |
| :R "1.081", | |
| :NORMY "0.047", | |
| :BAF "0.001", | |
| :LRR "0.301", | |
| :GTA "0/0", | |
| :THETA "0.029", | |
| :Y "192", | |
| :NORMX "1.033", | |
| :X "6265"}, | |
| :POS "2156362", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.868", | |
| :devY_AA "0.02", | |
| :zthresh_X "0.164466905172", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.037", | |
| :AF "0.00", | |
| :N_AA "20", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "AAGGGTCAGAGCAGCCACGCCTAGAGGGAGCCACCAGGGTCCACTTTTCT", | |
| :meanTHETA_BB "0.96", | |
| :meanX_AA "0.84", | |
| :zthresh_Y "0.166422696755", | |
| :devTHETA_AA "0.015", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.43", | |
| :meanY_BB "0.717", | |
| :PROBE_B ".", | |
| :devX_AA "0.098", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.104", | |
| :devY_BB "0.096", | |
| :ALLELE_B "G", | |
| :N_AB "106", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2156362", | |
| :meanR_AA "0.877", | |
| :devTHETA_AB "0.026", | |
| :GC_SCORE "0.888", | |
| :devY_AB "0.053", | |
| :meanTHETA_AB "0.493", | |
| :meanTHETA_AA "0.028", | |
| :devX_AB "0.053", | |
| :refSNP "rs2460000", | |
| :meanR_BB "0.762", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.016", | |
| :meanX_BB "0.045", | |
| :N_BB "138", | |
| :meanX_AB "0.439"}} | |
| {:ID "rs263526", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.794", | |
| :GTZ "0/0", | |
| :R "2.233", | |
| :NORMY "0.093", | |
| :BAF "0.013", | |
| :LRR "0.037", | |
| :GTA "0/0", | |
| :THETA "0.028", | |
| :Y "372", | |
| :NORMX "2.14", | |
| :X "12982"}, | |
| :POS "2173504", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "2.292", | |
| :devY_AA "0.024", | |
| :zthresh_X "0.180160796471", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.032", | |
| :meanY_AA "0.061", | |
| :AF "0.00", | |
| :N_AA "141", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "GTGGGGACAGTCCCGCGTGCTGACCTGAGCCTGGCAGAGTCAATATCTTG", | |
| :meanTHETA_BB "0.985", | |
| :meanX_AA "2.112", | |
| :zthresh_Y "0.174674519429", | |
| :devTHETA_AA "0.007", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.904", | |
| :meanY_BB "1.531", | |
| :PROBE_B ".", | |
| :devX_AA "0.207", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.253", | |
| :devY_BB "0.142", | |
| :ALLELE_B "C", | |
| :N_AB "100", | |
| :devR_BB "0.141", | |
| :ILLUMINA_POS "2173504", | |
| :meanR_AA "2.173", | |
| :devTHETA_AB "0.018", | |
| :GC_SCORE "0.786", | |
| :devY_AB "0.09", | |
| :meanTHETA_AB "0.368", | |
| :meanTHETA_AA "0.018", | |
| :devX_AB "0.132", | |
| :refSNP "rs263526", | |
| :meanR_BB "1.567", | |
| :devR_AA "0.211", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.036", | |
| :N_BB "23", | |
| :meanX_AB "1.388"}} | |
| {:ID "rs260513", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.759", | |
| :GTZ "0/0", | |
| :R "1.354", | |
| :NORMY "1.229", | |
| :BAF "0.982", | |
| :LRR "0.095", | |
| :GTA "0/0", | |
| :THETA "0.935", | |
| :Y "4100", | |
| :NORMX "0.125", | |
| :X "876"}, | |
| :POS "2180524", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.377", | |
| :devY_AA "0.049", | |
| :zthresh_X "0.249250145319", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.027", | |
| :meanY_AA "0.168", | |
| :AF "0.00", | |
| :N_AA "48", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "ACCATCAGGGTGGCAGTGCCAGGCAGCACCAAGAAACAACAGCACTCGAC", | |
| :meanTHETA_BB "0.946", | |
| :meanX_AA "0.971", | |
| :zthresh_Y "0.196768510557", | |
| :devTHETA_AA "0.034", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.861", | |
| :meanY_BB "1.165", | |
| :PROBE_B ".", | |
| :devX_AA "0.119", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.208", | |
| :devY_BB "0.132", | |
| :ALLELE_B "G*", | |
| :N_AB "119", | |
| :devR_BB "0.141", | |
| :ILLUMINA_POS "2180524", | |
| :meanR_AA "1.138", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.765", | |
| :devY_AB "0.085", | |
| :meanTHETA_AB "0.656", | |
| :meanTHETA_AA "0.109", | |
| :devX_AB "0.056", | |
| :refSNP "rs260513", | |
| :meanR_BB "1.264", | |
| :devR_AA "0.129", | |
| :devTHETA_BB "0.014", | |
| :meanX_BB "0.1", | |
| :N_BB "96", | |
| :meanX_AB "0.516"}} | |
| {:ID "rs12084736", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.913", | |
| :GTZ "0/0", | |
| :R "1.291", | |
| :NORMY "1.219", | |
| :BAF "0.991", | |
| :LRR "-0.031", | |
| :GTA "0/0", | |
| :THETA "0.962", | |
| :Y "4063", | |
| :NORMX "0.073", | |
| :X "558"}, | |
| :POS "2189580", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.587", | |
| :devY_AA "0.028", | |
| :zthresh_X "0.175852665434", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.033", | |
| :AF "0.00", | |
| :N_AA "20", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "ACATTCCAAGACAATAACATCTGGCTGTCCAAAGATTACTTCTGGTTAAA", | |
| :meanTHETA_BB "0.969", | |
| :meanX_AA "1.297", | |
| :zthresh_Y "0.174814698385", | |
| :devTHETA_AA "0.014", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.853", | |
| :meanY_BB "1.254", | |
| :PROBE_B ".", | |
| :devX_AA "0.11", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.126", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C*", | |
| :N_AB "66", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2189580", | |
| :meanR_AA "1.33", | |
| :devTHETA_AB "0.022", | |
| :GC_SCORE "0.876", | |
| :devY_AB "0.065", | |
| :meanTHETA_AB "0.547", | |
| :meanTHETA_AA "0.016", | |
| :devX_AB "0.057", | |
| :refSNP "rs12084736", | |
| :meanR_BB "1.314", | |
| :devR_AA "0.109", | |
| :devTHETA_BB "0.009", | |
| :meanX_BB "0.061", | |
| :N_BB "177", | |
| :meanX_AB "0.735"}} | |
| {:ID "rs903908", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.847", | |
| :GTZ "0/0", | |
| :R "1.157", | |
| :NORMY "0.09", | |
| :BAF "0", | |
| :LRR "0.265", | |
| :GTA "0/0", | |
| :THETA "0.054", | |
| :Y "334", | |
| :NORMX "1.067", | |
| :X "6474"}, | |
| :POS "2202967", | |
| :ALT "C", | |
| :REF "T", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.762", | |
| :devY_AA "0.024", | |
| :zthresh_X "0.160457037655", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.078", | |
| :AF "0.00", | |
| :N_AA "43", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T*", | |
| :PROBE_A "GGCCTCCAGCGTGGCGATTAAGCGCTCAGATGCTGGCAGGTTCCGCGGAG", | |
| :meanTHETA_BB "0.936", | |
| :meanX_AA "0.883", | |
| :zthresh_Y "0.16724713093", | |
| :devTHETA_AA "0.017", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.302", | |
| :meanY_BB "0.528", | |
| :PROBE_B ".", | |
| :devX_AA "0.124", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.122", | |
| :devY_BB "0.093", | |
| :ALLELE_B "C", | |
| :N_AB "112", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2202967", | |
| :meanR_AA "0.961", | |
| :devTHETA_AB "0.028", | |
| :GC_SCORE "0.821", | |
| :devY_AB "0.055", | |
| :meanTHETA_AB "0.369", | |
| :meanTHETA_AA "0.056", | |
| :devX_AB "0.082", | |
| :refSNP "rs903908", | |
| :meanR_BB "0.581", | |
| :devR_AA "0.132", | |
| :devTHETA_BB "0.026", | |
| :meanX_BB "0.054", | |
| :N_BB "109", | |
| :meanX_AB "0.461"}} | |
| {:ID "rs10910047", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.781", | |
| :GTZ "0/0", | |
| :R "0.558", | |
| :NORMY "0.03", | |
| :BAF "0", | |
| :LRR "0.35", | |
| :GTA "0/0", | |
| :THETA "0.037", | |
| :Y "122", | |
| :NORMX "0.528", | |
| :X "3199"}, | |
| :POS "2211849", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.424", | |
| :devY_AA "0.019", | |
| :zthresh_X "0.157771298639", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.042", | |
| :AF "0.00", | |
| :N_AA "44", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "TACAGCAGACCAGGCCTTCCCCAACGAGGGTAGAAGGGGCAGCCCCCTTG", | |
| :meanTHETA_BB "0.921", | |
| :meanX_AA "0.395", | |
| :zthresh_Y "0.165596181995", | |
| :devTHETA_AA "0.029", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.219", | |
| :meanY_BB "0.384", | |
| :PROBE_B ".", | |
| :devX_AA "0.092", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.091", | |
| :ALLELE_B "G", | |
| :N_AB "118", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2211849", | |
| :meanR_AA "0.437", | |
| :devTHETA_AB "0.042", | |
| :GC_SCORE "0.778", | |
| :devY_AB "0.053", | |
| :meanTHETA_AB "0.521", | |
| :meanTHETA_AA "0.068", | |
| :devX_AB "0.05", | |
| :refSNP "rs10910047", | |
| :meanR_BB "0.432", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.032", | |
| :meanX_BB "0.048", | |
| :N_BB "102", | |
| :meanX_AB "0.205"}} | |
| {:ID "rs2017143", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.916", | |
| :GTZ "1/1", | |
| :R "1.233", | |
| :NORMY "0.057", | |
| :BAF "0.003", | |
| :LRR "0.543", | |
| :GTA "1/1", | |
| :THETA "0.031", | |
| :Y "229", | |
| :NORMX "1.176", | |
| :X "7131"}, | |
| :POS "2220649", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.959", | |
| :devY_AA "0.018", | |
| :zthresh_X "0.154759574434", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.036", | |
| :AF "1.00", | |
| :N_AA "82", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "AGCACACAGAAGGCAGAGGCTAGAGATGCAGCTCCTCTGTTATGTTGAGC", | |
| :meanTHETA_BB "0.967", | |
| :meanX_AA "0.81", | |
| :zthresh_Y "0.164987175082", | |
| :devTHETA_AA "0.014", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.521", | |
| :meanY_BB "0.846", | |
| :PROBE_B ".", | |
| :devX_AA "0.11", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.117", | |
| :devY_BB "0.097", | |
| :ALLELE_B "C*", | |
| :N_AB "114", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2220649", | |
| :meanR_AA "0.846", | |
| :devTHETA_AB "0.031", | |
| :GC_SCORE "0.879", | |
| :devY_AB "0.066", | |
| :meanTHETA_AB "0.555", | |
| :meanTHETA_AA "0.028", | |
| :devX_AB "0.057", | |
| :refSNP "rs2017143", | |
| :meanR_BB "0.89", | |
| :devR_AA "0.114", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.044", | |
| :N_BB "68", | |
| :meanX_AB "0.438"}} | |
| {:ID "rs884940", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.853", | |
| :GTZ "0/0", | |
| :R "1.513", | |
| :NORMY "1.444", | |
| :BAF "0.99", | |
| :LRR "0.096", | |
| :GTA "0/0", | |
| :THETA "0.969", | |
| :Y "4813", | |
| :NORMX "0.069", | |
| :X "560"}, | |
| :POS "2223866", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.742", | |
| :devY_AA "0.026", | |
| :zthresh_X "0.150034730075", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.034", | |
| :AF "0.00", | |
| :N_AA "40", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "TGGGTGCCCCATGAAGGACTGAGCAGTGGGGTGACCCTTCATCTAGCAGA", | |
| :meanTHETA_BB "0.979", | |
| :meanX_AA "1.49", | |
| :zthresh_Y "0.164770432987", | |
| :devTHETA_AA "0.011", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.881", | |
| :meanY_BB "1.364", | |
| :PROBE_B ".", | |
| :devX_AA "0.126", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.122", | |
| :devY_BB "0.098", | |
| :ALLELE_B "C*", | |
| :N_AB "108", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2223866", | |
| :meanR_AA "1.524", | |
| :devTHETA_AB "0.021", | |
| :GC_SCORE "0.826", | |
| :devY_AB "0.07", | |
| :meanTHETA_AB "0.507", | |
| :meanTHETA_AA "0.014", | |
| :devX_AB "0.069", | |
| :refSNP "rs884940", | |
| :meanR_BB "1.409", | |
| :devR_AA "0.126", | |
| :devTHETA_BB "0.009", | |
| :meanX_BB "0.045", | |
| :N_BB "115", | |
| :meanX_AB "0.862"}} | |
| {:ID "rs2645065", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.848", | |
| :GTZ "0/0", | |
| :R "0.934", | |
| :NORMY "0.862", | |
| :BAF "0.995", | |
| :LRR "0.096", | |
| :GTA "0/0", | |
| :THETA "0.947", | |
| :Y "2877", | |
| :NORMX "0.072", | |
| :X "519"}, | |
| :POS "2261222", | |
| :ALT "A", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.273", | |
| :devY_AA "0.041", | |
| :zthresh_X "0.185183892876", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.018", | |
| :meanY_AA "0.051", | |
| :AF "0.00", | |
| :N_AA "2", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "CATCACGTGGGCCCCTTTGGGTCTGTCGAGGGTCTATTTCAGATAGTGTT", | |
| :meanTHETA_BB "0.952", | |
| :meanX_AA "1.272", | |
| :zthresh_Y "0.175617204577", | |
| :devTHETA_AA "0.021", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.506", | |
| :meanY_BB "0.81", | |
| :PROBE_B ".", | |
| :devX_AA "0.126", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.129", | |
| :devY_BB "0.094", | |
| :ALLELE_B "C*", | |
| :N_AB "49", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2261222", | |
| :meanR_AA "1.323", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.822", | |
| :devY_AB "0.056", | |
| :meanTHETA_AB "0.371", | |
| :meanTHETA_AA "0.026", | |
| :devX_AB "0.079", | |
| :refSNP "rs2645065", | |
| :meanR_BB "0.87", | |
| :devR_AA "0.124", | |
| :devTHETA_BB "0.014", | |
| :meanX_BB "0.061", | |
| :N_BB "213", | |
| :meanX_AB "0.767"}} | |
| {:ID "rs903904", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.78", | |
| :GTZ "0/0", | |
| :R "0.567", | |
| :NORMY "0.524", | |
| :BAF "1", | |
| :LRR "0.244", | |
| :GTA "0/0", | |
| :THETA "0.948", | |
| :Y "1751", | |
| :NORMX "0.043", | |
| :X "307"}, | |
| :POS "2263888", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.523", | |
| :devY_AA "0.016", | |
| :zthresh_X "0.165896417592", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.021", | |
| :meanY_AA "0.054", | |
| :AF "0.00", | |
| :N_AA "10", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "T", | |
| :PROBE_A "TGCTCCCTGTCCTTGGTCCACACTCAGGTTCTTCCAGTGGGATGGGCGAC", | |
| :meanTHETA_BB "0.919", | |
| :meanX_AA "0.429", | |
| :zthresh_Y "0.169019605045", | |
| :devTHETA_AA "0.019", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.251", | |
| :meanY_BB "0.427", | |
| :PROBE_B ".", | |
| :devX_AA "0.09", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.09", | |
| :ALLELE_B "C*", | |
| :N_AB "55", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2263888", | |
| :meanR_AA "0.483", | |
| :devTHETA_AB "0.032", | |
| :GC_SCORE "0.778", | |
| :devY_AB "0.05", | |
| :meanTHETA_AB "0.475", | |
| :meanTHETA_AA "0.079", | |
| :devX_AB "0.054", | |
| :refSNP "rs903904", | |
| :meanR_BB "0.481", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.029", | |
| :meanX_BB "0.054", | |
| :N_BB "199", | |
| :meanX_AB "0.272"}} | |
| {:ID "rs2055204", | |
| "200557070005_R06C01" {:GT "1/0", | |
| :IGC "0.901", | |
| :GTZ "1/0", | |
| :R "1.116", | |
| :NORMY "0.546", | |
| :BAF "0.466", | |
| :LRR "0.179", | |
| :GTA "1/0", | |
| :THETA "0.487", | |
| :Y "1840", | |
| :NORMX "0.569", | |
| :X "3502"}, | |
| :POS "2280661", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.992", | |
| :devY_AA "0.018", | |
| :zthresh_X "0.171572596858", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.02", | |
| :meanY_AA "0.038", | |
| :AF "0.500", | |
| :N_AA "86", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "GGTAAAAGCTTAAGCTTTCAGGTTCCCTCCTCCTCCACAGGTCCTTTTCT", | |
| :meanTHETA_BB "0.962", | |
| :meanX_AA "0.851", | |
| :zthresh_Y "0.140284040763", | |
| :devTHETA_AA "0.013", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.512", | |
| :meanY_BB "0.802", | |
| :PROBE_B ".", | |
| :devX_AA "0.106", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.123", | |
| :devY_BB "0.096", | |
| :ALLELE_B "G*", | |
| :N_AB "97", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2280661", | |
| :meanR_AA "0.889", | |
| :devTHETA_AB "0.027", | |
| :GC_SCORE "0.864", | |
| :devY_AB "0.06", | |
| :meanTHETA_AB "0.52", | |
| :meanTHETA_AA "0.029", | |
| :devX_AB "0.057", | |
| :refSNP "rs2055204", | |
| :meanR_BB "0.851", | |
| :devR_AA "0.109", | |
| :devTHETA_BB "0.016", | |
| :meanX_BB "0.048", | |
| :N_BB "81", | |
| :meanX_AB "0.48"}} | |
| {:ID "rs7527871", | |
| "200557070005_R06C01" {:GT "0/1", | |
| :IGC "0.832", | |
| :GTZ "0/1", | |
| :R "1.715", | |
| :NORMY "0.86", | |
| :BAF "0.539", | |
| :LRR "0.008", | |
| :GTA "0/1", | |
| :THETA "0.502", | |
| :Y "2891", | |
| :NORMX "0.855", | |
| :X "5267"}, | |
| :POS "2281726", | |
| :ALT "C", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.739", | |
| :devY_AA "0.019", | |
| :zthresh_X "0.172062859333", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.03", | |
| :meanY_AA "0.042", | |
| :AF "0.500", | |
| :N_AA "153", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "AATATCTGGCAATAGTCCATGTCTTGGAAATCATCTTTTCTTCTCAACGA", | |
| :meanTHETA_BB "0.975", | |
| :meanX_AA "1.508", | |
| :zthresh_Y "0.138849257375", | |
| :devTHETA_AA "0.008", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.817", | |
| :meanY_BB "1.269", | |
| :PROBE_B ".", | |
| :devX_AA "0.106", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.116", | |
| :devY_BB "0.106", | |
| :ALLELE_B "C", | |
| :N_AB "95", | |
| :devR_BB "0.105", | |
| :ILLUMINA_POS "2281726", | |
| :meanR_AA "1.549", | |
| :devTHETA_AB "0.025", | |
| :GC_SCORE "0.811", | |
| :devY_AB "0.061", | |
| :meanTHETA_AB "0.462", | |
| :meanTHETA_AA "0.018", | |
| :devX_AB "0.066", | |
| :refSNP "rs7527871", | |
| :meanR_BB "1.319", | |
| :devR_AA "0.107", | |
| :devTHETA_BB "0.015", | |
| :meanX_BB "0.05", | |
| :N_BB "14", | |
| :meanX_AB "0.922"}} | |
| {:ID "rs10910053", | |
| "200557070005_R06C01" {:GT "1/0", | |
| :IGC "0.665", | |
| :GTZ "1/0", | |
| :R "0.52", | |
| :NORMY "0.24", | |
| :BAF "0.431", | |
| :LRR "0.558", | |
| :GTA "1/0", | |
| :THETA "0.452", | |
| :Y "814", | |
| :NORMX "0.28", | |
| :X "1714"}, | |
| :POS "2282135", | |
| :ALT "A", | |
| :REF "G", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "0.347", | |
| :devY_AA "0.022", | |
| :zthresh_X "0.164176240584", | |
| :ILLUMINA_STRAND "BOT", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.06", | |
| :AF "0.500", | |
| :N_AA "31", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A", | |
| :PROBE_A "GTCTCTGGACTGAAGGAAGCAGAAGGCCCTGGAGGGCACCTCCTGCTGGG", | |
| :meanTHETA_BB "0.898", | |
| :meanX_AA "0.334", | |
| :zthresh_Y "0.166973435529", | |
| :devTHETA_AA "0.034", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.175", | |
| :meanY_BB "0.287", | |
| :PROBE_B ".", | |
| :devX_AA "0.086", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.088", | |
| :ALLELE_B "G*", | |
| :N_AB "101", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2282135", | |
| :meanR_AA "0.393", | |
| :devTHETA_AB "0.048", | |
| :GC_SCORE "0.713", | |
| :devY_AB "0.052", | |
| :meanTHETA_AB "0.507", | |
| :meanTHETA_AA "0.113", | |
| :devX_AB "0.051", | |
| :refSNP "rs10910053", | |
| :meanR_BB "0.334", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.042", | |
| :meanX_BB "0.047", | |
| :N_BB "132", | |
| :meanX_AB "0.172"}} | |
| {:ID "rs4648831", | |
| "200557070005_R06C01" {:GT "0/0", | |
| :IGC "0.851", | |
| :GTZ "0/0", | |
| :R "1.359", | |
| :NORMY "1.246", | |
| :BAF "0.998", | |
| :LRR "0.067", | |
| :GTA "0/0", | |
| :THETA "0.942", | |
| :Y "3966", | |
| :NORMX "0.113", | |
| :X "867"}, | |
| :POS "2283117", | |
| :ALT "T", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.476", | |
| :devY_AA "0.035", | |
| :zthresh_X "0.291167241956", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.027", | |
| :meanY_AA "0.097", | |
| :AF "0.00", | |
| :N_AA "6", | |
| :BEADSET_ID "946", | |
| :ALLELE_A "T", | |
| :PROBE_A "TTGTGATGAGTTCAGAAAGATGAAACTAAAGAATGCGAAGCAACCAGCAC", | |
| :meanTHETA_BB "0.944", | |
| :meanX_AA "1.152", | |
| :zthresh_Y "0.202340927754", | |
| :devTHETA_AA "0.02", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.818", | |
| :meanY_BB "1.191", | |
| :PROBE_B ".", | |
| :devX_AA "0.106", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "0", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.133", | |
| :devY_BB "0.095", | |
| :ALLELE_B "C*", | |
| :N_AB "38", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2283117", | |
| :meanR_AA "1.249", | |
| :devTHETA_AB "0.024", | |
| :GC_SCORE "0.824", | |
| :devY_AB "0.067", | |
| :meanTHETA_AB "0.569", | |
| :meanTHETA_AA "0.054", | |
| :devX_AB "0.056", | |
| :refSNP "rs4648831", | |
| :meanR_BB "1.297", | |
| :devR_AA "0.109", | |
| :devTHETA_BB "0.015", | |
| :meanX_BB "0.106", | |
| :N_BB "220", | |
| :meanX_AB "0.658"}} | |
| {:ID "rs2843130", | |
| "200557070005_R06C01" {:GT "1/1", | |
| :IGC "0.742", | |
| :GTZ "1/1", | |
| :R "1.272", | |
| :NORMY "1.202", | |
| :BAF "1", | |
| :LRR "-0.064", | |
| :GTA "1/1", | |
| :THETA "0.963", | |
| :Y "4549", | |
| :NORMX "0.07", | |
| :X "419"}, | |
| :POS "2283313", | |
| :ALT "G", | |
| :REF "C", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.84", | |
| :devY_AA "0.029", | |
| :zthresh_X "0.213278991968", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.022", | |
| :meanY_AA "0.097", | |
| :AF "1.00", | |
| :N_AA "14", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "C*", | |
| :PROBE_A "CCTCATACCAGGTTCAGAAGCTCCAAGTTTAACTGTGGACATTGGATCTC", | |
| :meanTHETA_BB "0.956", | |
| :meanX_AA "1.187", | |
| :zthresh_Y "0.186192344854", | |
| :devTHETA_AA "0.016", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.904", | |
| :meanY_BB "1.251", | |
| :PROBE_B "CCTCATACCAGGTTCAGAAGCTCCAAGTTTAACTGTGGACATTGGATCTG", | |
| :devX_AA "0.108", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "2", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.175", | |
| :devY_BB "0.098", | |
| :ALLELE_B "G", | |
| :N_AB "66", | |
| :devR_BB "0.102", | |
| :ILLUMINA_POS "2283313", | |
| :meanR_AA "1.284", | |
| :devTHETA_AB "0.024", | |
| :GC_SCORE "0.756", | |
| :devY_AB "0.066", | |
| :meanTHETA_AB "0.489", | |
| :meanTHETA_AA "0.052", | |
| :devX_AB "0.067", | |
| :refSNP "rs2843130", | |
| :meanR_BB "1.337", | |
| :devR_AA "0.113", | |
| :devTHETA_BB "0.011", | |
| :meanX_BB "0.086", | |
| :N_BB "184", | |
| :meanX_AB "0.936"}} | |
| {:ID "rs2840528", | |
| "200557070005_R06C01" {:GT "0/1", | |
| :IGC "0.881", | |
| :GTZ "0/1", | |
| :R "1.197", | |
| :NORMY "0.613", | |
| :BAF "0.448", | |
| :LRR "0.26", | |
| :GTA "0/1", | |
| :THETA "0.516", | |
| :Y "2063", | |
| :NORMX "0.584", | |
| :X "3596"}, | |
| :POS "2283896", | |
| :ALT "G", | |
| :REF "A", | |
| :CHROM "1", | |
| :FILTER ["."], | |
| :QUAL ".", | |
| :INFO {:meanR_AB "1.017", | |
| :devY_AA "0.017", | |
| :zthresh_X "0.171882074746", | |
| :ILLUMINA_STRAND "TOP", | |
| :devX_BB "0.017", | |
| :meanY_AA "0.043", | |
| :AF "0.500", | |
| :N_AA "55", | |
| :BEADSET_ID "927", | |
| :ALLELE_A "A*", | |
| :PROBE_A "GAAGTCACCGTGGCTGGGCTGAAGCCACTCTAGTGTTGTTTGCTAAAAGT", | |
| :meanTHETA_BB "0.969", | |
| :meanX_AA "0.806", | |
| :zthresh_Y "0.13940796503", | |
| :devTHETA_AA "0.013", | |
| :ILLUMINA_CHR "1", | |
| :meanY_AB "0.566", | |
| :meanY_BB "0.878", | |
| :PROBE_B ".", | |
| :devX_AA "0.096", | |
| :ILLUMINA_BUILD "37", | |
| :AN "2", | |
| :AC "1", | |
| :SOURCE "dbSNP", | |
| :devR_AB "0.1", | |
| :devY_BB "0.097", | |
| :ALLELE_B "G", | |
| :N_AB "130", | |
| :devR_BB "0.1", | |
| :ILLUMINA_POS "2283896", | |
| :meanR_AA "0.849", | |
| :devTHETA_AB "0.043", | |
| :GC_SCORE "0.847", | |
| :devY_AB "0.065", | |
| :meanTHETA_AB "0.572", | |
| :meanTHETA_AA "0.034", | |
| :devX_AB "0.056", | |
| :refSNP "rs2840528", | |
| :meanR_BB "0.921", | |
| :devR_AA "0.1", | |
| :devTHETA_BB "0.013", | |
| :meanX_BB "0.042", | |
| :N_BB "79", | |
| :meanX_AB "0.451"}} | |
| ...) |
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