Created
December 22, 2017 12:26
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Pandas reverse complement
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| def reverse_complement(sequence): | |
| tab = str.maketrans("ACGT", "TGCA") | |
| return sequence.translate(tab)[::-1] | |
| def apply_rc(row): | |
| if row['strand'] == '-': | |
| row['seq'] = reverse_complement(row['seq']) | |
| return row | |
| df.apply(apply_rc, axis=1) |
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