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@tdbennett
tdbennett / gist:e1750aa2be90938311978fb2437271b0
Created October 1, 2021 12:27
downloading from Citrix Sharefile at the command line
e.g. from secure computational server
1) cd to location where you want the data
2) lftp ftps://childrenscolorado.sharefileftp.com
3) login childrenscolorado/your.email@domain.whatever
4) password
5) cd to location on ShareFile, need to escape spaces, e.g.: `cd Sepsis\ Database\ -\ Bennett`
6) get filename.csv, repeat
7) exit
@tdbennett
tdbennett / gist:65cbb0f67cd7e3413456685a2cc9f5f2
Created December 4, 2017 21:12
Analytics Core mission statement
Draft New:
Mission:
To be a multidisciplinary, collaborative analytic and computational group that catalyzes research resulting in innovative applications of complex analytic approaches and development of novel analytic and computational approaches, methods, and tools.
This Core is designed to fill gaps in current data analytic capabilities on campus. The initial focus is on applying machine learning and causal inference to analyses of observational data. In particular, we will develop and apply expertise in analyzing big, complex, and messy data such as those emerging from the Children’s Hospital Colorado and University of Colorado Health electronic medical record systems, Health Data Compass and the D2V Informatics core. Text, image, and sensor data offer unique challenges for analytic teams, and we are recruiting and developing expertise in those areas. The D2V Analytics Core is a collaborative group that has unique expertise in these types of analyses, but which also builds strong bridges to other an
## Setting the default library to R-site-library is done by editing the Rprofile.site file.
## For ease, you can copy the Rprofile.site file from 3.3.1 to 3.3.3, and so on.
## For example,
### Windows
C:\Program Files\R\R-3.3.1\etc\Rprofile.site
should be copied to
@tdbennett
tdbennett / HWTemplate.tex
Created September 1, 2016 18:01 — forked from dcernst/HWTemplate.tex
LaTeX homework template for Weekly Homework assignments for Dana Ernst's courses.
% --------------------------------------------------------------
% This is all preamble stuff that you don't have to worry about.
% Head down to where it says "Start here"
% --------------------------------------------------------------
\documentclass[12pt]{article}
\usepackage[margin=1in]{geometry}
\usepackage{amsmath,amsthm,amssymb}
@tdbennett
tdbennett / remove_git_submodule.md
Created August 1, 2016 15:00 — forked from atomkirk/remove_git_submodule.md
Remove a Git Submodule

How to completely remove a submodule:

  1. Run git rm -rf path/to/submodule (use --cached if it's already gone)
  2. Remove entry in .gitmodules
  3. Remove entry in .git/config
  4. Run rm -rf .git/modules/
### script to update R version - Windows
# installing/loading the package:
if(!require(installr)) {
install.packages("installr"); require(installr)} #load / install+load installr
# using the package:
updateR()
# this will start the updating process of your R installation.
@tdbennett
tdbennett / README.md
Created December 27, 2015 13:21 — forked from chrisjacob/README.md
Setup GitHub Pages "gh-pages" branch and "master" branch as subfolders of a parent project folder ("grandmaster").

Intro

Description: Setup GitHub Pages "gh-pages" branch and "master" branch as subfolders of a parent project folder ("grandmaster").

Author: Chris Jacob @_chrisjacob

Tutorial (Gist): https://gist.github.com/833223

The Result