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tedyun / t4u_plus_v18_linux_mint.md
Created August 8, 2021 03:09
How to install TP-LINK Archer T4U Plus (v1.8) driver on Linux Mint 20
@tedyun
tedyun / sources.list
Created April 29, 2021 23:38
Default /etc/apt/sources.list file for Ubuntu 20.04 server on DigitalOcean
## Note, this file is written by cloud-init on first boot of an instance
## modifications made here will not survive a re-bundle.
## if you wish to make changes you can:
## a.) add 'apt_preserve_sources_list: true' to /etc/cloud/cloud.cfg
## or do the same in user-data
## b.) add sources in /etc/apt/sources.list.d
## c.) make changes to template file /etc/cloud/templates/sources.list.tmpl
# See http://help.ubuntu.com/community/UpgradeNotes for how to upgrade to
# newer versions of the distribution.
@tedyun
tedyun / gist:0d74db111a57c2d114a78ffa53a355b7
Created March 19, 2021 23:37
SHAPEIT4.1.3 chromosome X failure
SHAPEIT
* Author : Olivier DELANEAU, University of Lausanne
* Contact : olivier.delaneau@gmail.com
* Version : 4.1.2
* Run date : 19/03/2021 - 18:30:15
Files:
* Input VCF : [CCDG_13607_B01_GRM_WGS_2019-02-19_chrX.recalibrated_variants.vcf.gz]
* Genetic Map : [chrX.b38.gmap.gz]
* Output VCF : [phased_1kgp_gatk_chrX.vcf.gz]
@tedyun
tedyun / shapeit4_output_dvglx_chrX.txt
Created March 17, 2021 00:07
SHAPEIT4 error for chromosome X: "ERROR: No variants to be phased"
SHAPEIT
* Author : Olivier DELANEAU, University of Lausanne
* Contact : olivier.delaneau@gmail.com
* Version : 4.1.2
* Run date : 16/03/2021 - 18:28:17
Files:
* Input VCF : [cohort-chrX.release.vcf.gz]
* Genetic Map : [chrX.b38.gmap.gz]
* Output VCF : [cohort-chrX.release.phased.vcf.gz]
# Merge DeepVariant gVCFs without any filtering or genotype revision.
unifier_config:
min_AQ1: 0
min_AQ2: 0
min_GQ: 0
monoallelic_sites_for_lost_alleles: true
max_alleles_per_site: 32
genotyper_config:
required_dp: 0
revise_genotypes: false
@tedyun
tedyun / operation_log.txt
Created April 23, 2016 21:31
Atom Crash Log
[5788:4680:0918/195850:VERBOSE1:crash_service_main.cc(68)] Session start. cmdline is [--reporter-url=http://54.249.141.255:1127/post --application-name=Atom --v=1]
[5788:4680:0918/195850:VERBOSE1:crash_service.cc(142)] window handle is 00260430
[5788:4680:0918/195850:VERBOSE1:crash_service.cc(290)] pipe name is \\.\pipe\Atom Crash Service
dumps at C:\Users\tyun\AppData\Local\Temp\Atom Crashes
[5788:4680:0918/195850:VERBOSE1:crash_service.cc(294)] checkpoint is C:\Users\tyun\AppData\Local\Temp\Atom Crashes\crash_checkpoint.txt
server is http://54.249.141.255:1127/post
maximum 128 reports/day
reporter is electron-crash-service
[5788:4680:0918/195850:VERBOSE1:crash_service_main.cc(84)] Ready to process crash requests
[5788:5204:0918/195850:VERBOSE1:crash_service.cc(323)] client start. pid = 3356