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#!/bin/bash | |
# | |
# AUTHOR: Patrick Terrematte for HPC of NPAD/UFRN and hg38: | |
# http://hungria.imd.ufrn.br/~terrematte/aDNA/rna_seq_variant_pipeline.sh | |
# | |
# Based on pieline Anand M. | |
# RNA-Seq variant calling pieline according to GATK Best practices. | |
# https://www.broadinstitute.org/gatk/guide/article?id=3891 | |
# Full Pipeline of Gatk of hg19: | |
# https://gist.github.com/PoisonAlien/c6c03539cf4b1ac41cf1 |