terrematte

#!/bin/bash
#
# AUTHOR: Patrick Terrematte for HPC of NPAD/UFRN and hg38:
# http://hungria.imd.ufrn.br/~terrematte/aDNA/rna_seq_variant_pipeline.sh
#
# Based on pieline Anand M.
# RNA-Seq variant calling pieline according to GATK Best practices.
# https://www.broadinstitute.org/gatk/guide/article?id=3891
# Full Pipeline of Gatk of hg19:
# https://gist.github.com/PoisonAlien/c6c03539cf4b1ac41cf1