gistfile1.txt

g++   -o cpptraj Action_Angle.o Action_AtomicCorr.o Action_AtomicFluct.o Action_AtomMap.o Action_AutoImage.o Action_Average.o Action_Bounds.o Action_Box.o Action_Center.o Action_CheckStructure.o Action_Contacts.o Action_Closest.o Action_ClusterDihedral.o Action_CreateCrd.o Action_Diffusion.o Action_Dihedral.o Action_Dipole.o Action_Distance.o Action_DistRmsd.o Action_DihedralScan.o Action_DNAionTracker.o Action_DSSP.o Action_FixAtomOrder.o Action_Grid.o Action_GridFreeEnergy.o Action_Hbond.o Action_Image.o Action_Jcoupling.o Action_Mask.o Action_MakeStructure.o Action_Outtraj.o Action_Pairwise.o Action_Principal.o Action_Matrix.o Action_MinDist.o Action_Molsurf.o Action_MultiDihedral.o Action_NAstruct.o Action_Projection.o Action_Pucker.o Action_Radgyr.o Action_Radial.o Action_RandomizeIons.o Action_Rmsd.o Action_Rotate.o Action_Rotdif.o Action_RunningAvg.o Action_Scale.o Action_STFC_Diffusion.o Action_Strip.o Action_SymmetricRmsd.o Action_Volmap.o Action_Spam.o Action_Surf.o Action_Temperature.o Action_Translate.o Action_Unwrap.o Action_Vector.o Action_Watershell.o ActionList.o ActionFrameCounter.o Action_LIE.o Analysis_AutoCorr.o Analysis_Clustering.o Analysis_Corr.o Analysis_CrankShaft.o Analysis_CrdFluct.o Analysis_CrossCorr.o Analysis_FFT.o Analysis_Hist.o Analysis_IRED.o Analysis_Lifetime.o Analysis_Matrix.o Analysis_Modes.o Analysis_Timecorr.o Analysis_Rms2d.o Analysis_RmsAvgCorr.o Analysis_RunningAvg.o Analysis_Statistics.o AnalysisList.o ArgList.o Atom.o AtomMap.o AtomMask.o AxisType.o Box.o BufferedFrame.o BufferedLine.o ByteRoutines.o ClusterDist.o ClusterList.o ClusterMatrix.o ClusterNode.o Cluster_HierAgglo.o Cluster_DBSCAN.o Command.o ComplexArray.o CpptrajFile.o Cpptraj.o CpptrajStdio.o DataFile.o DataFileList.o DataIO.o DataIO_Gnuplot.o DataIO_Grace.o DataIO_Std.o DataSet.o DataSet_Coords.o DataSet_double.o DataSet_float.o DataSet_integer.o DataSet_string.o DataSet_Vector.o DataSet_Matrix.o DataSet_Modes.o DataSetList.o DihedralSearch.o DistRoutines.o Dimension.o DS_Math.o FileIO_Bzip2.o FileIO_Gzip.o FileIO_Mpi.o FileIO_Std.o FileList.o FileName.o Frame.o FrameList.o Grid.o Histogram.o Hungarian.o Integrate.o ImageRoutines.o main.o MapAtom.o Matrix_3x3.o Matrix_2D.o MaskToken.o Mol2File.o NameType.o NetcdfFile.o Parm_Amber.o Parm_CharmmPsf.o ParmFile.o Parm_Mol2.o Parm_PDB.o Random.o Range.o ReferenceAction.o RmsAction.o Thermo.o Topology.o PDBfile.o ProgressBar.o PubFFT.o ReadLine.o StringRoutines.o TorsionRoutines.o TopologyList.o Trajin.o Trajin_Single.o Trajin_Multi.o Trajout.o Traj_AmberCoord.o Traj_AmberNetcdf.o Traj_AmberRestart.o Traj_Binpos.o Traj_AmberRestartNC.o Traj_CharmmDcd.o Traj_Conflib.o Traj_GmxTrX.o TrajectoryFile.o TrajinList.o Traj_Mol2File.o TrajoutList.o Traj_PDBfile.o TriangleMatrix.o Vec3.o molsurf.o MpiRoutines.o pub_fft.o \
               -L/private/tmp/amber12/lib /private/tmp/amber12/lib/libnetcdf.a -L/usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1 -lz -lbz2 -larpack -llapack -lblas -lgfortran  -w readline/libreadline.a