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[
    {
      "file_id": "MTBKS1-F1",
      "format": "nrn:mimetype:application/x-cdf",
      "project_id": "MTBKS1",
      "download_url": "http%3A%2F%2Fmetabobank.riken.jp%2Fdata%2FRPMM0001%2FRawDataset%2FL_22_1.cdf",
      "name": "RPMM0001 Raw Data File(GC-MS):L_22_1.cdf",
      "description": "",
      "file_format": "nrn:mimetype:application/x-cdf",
      "filename": "RPMM0001 Raw Data File(GC-MS):L_22_1.cdf",

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[
{
  "project": "http://rdf.ddbj.nig.ac.jp/MTBKS1",
  "project_id": "MTBKS1",
  "project_label": "Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana",
  "description": "Metabolites are not only the catalytic products of enzymatic reactions but also the active regulators or the ultimate phenotype of metabolic homeostasis in highly complex cellular processes. The modes of regulation at the metabolome level can be revealed by metabolic networks. We investigated the metabolic network between wild-type and 2 mutant (<i>methionine-over accumulation 1</i> [<i>mto1</i>] and <i>transparent testa4</i> [<i>tt4</i>]) plants regarding the alteration of metabolite accumulation in <i>Arabidopsis thaliana</i>. In the GC-TOF/MS analysis, we acquired quantitative information regarding over 170 metabolites, which has been analyzed by a novel score (ZMC, z-score of metabolite correlation) describing a characteristic metabolite in terms of correlation. Although t

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@startuml DDBJ

skinparam componentStyle rectangle

node "[Status: Deleted]" as Deleted #lightpink {
    (物理削除)
}

node "[Status: Canceled]" as Canceled #lightpink {
    (論理削除)

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#!/usr/bin/env ruby

require 'json'
require 'pp'

class MetabobankJsonConverter

  def initialize file
    @file = file
    check_for_json_format

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#!/usr/bin/env ruby

require 'json'
require 'pp'

# ruby metabobank-valdator.rb MBEditor_0.5.2_export_mb_mbcheck200914_MTBKS11.json
# See https://ddbj-dev.atlassian.net/browse/MB-88
 
class MetabobankValidator
  def initialize file, options

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{
  "query": {
    "bool": {
      "must_not": {
        "exists": {
          "field": "group"
        }
      }
    }
  },

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openapi: 3.0.0
info:
  title: DDBJ Data Validation API
  description: DDBJ Data Validation API
  version: 0.9.0
paths:
  /validation:
    post:
      tags:
        - Validation

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{
	"@context": [
		"https://schema.org/docs/jsonldcontext.json",
		{
			"@vocab": "http://togovar.biosciencedbc.jp/ontology/",
			"tgv": "http://togovar.biosciencedbc.jp/ontology/",
      "dcterms": "http://purl.org/dc/terms/",
      "m2r": "http://med2rdf.org/ontology/med2rdf",
      "faldo": "http://biohackathon.org/resource/faldo#",
      "obo": "http://purl.obolibrary.org/obo/",

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#!/usr/bin/env ruby
require 'elasticsearch'
require 'json'
require 'pp'
begin
  #client = Elasticsearch::Client.new({log: true, hosts: { host: 'localhost'}})
  client = Elasticsearch::Client.new({hosts: { host: 'localhost', port: 9291 }})
  q ='water'
  from = 0
  size = 20

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#!/usr/bin/env ruby
#
# ruby load_sample.rb biosample/annotated_json dev 

require 'elasticsearch'
require 'json'
require 'pp'

#client = Elasticsearch::Client.new({log: true, hosts: { host: 'localhost', user: 'user', password: 'password' }})
client = Elasticsearch::Client.new({log: true, hosts: { host: 'localhost'}})