Skip to content

Instantly share code, notes, and snippets.

@thadguidry
Created January 29, 2021 17:42
Show Gist options
  • Save thadguidry/7f9141580696eec943133a8617f6d9d1 to your computer and use it in GitHub Desktop.
Save thadguidry/7f9141580696eec943133a8617f6d9d1 to your computer and use it in GitHub Desktop.
debug OpenRefine Clustering
11:37:14.361 [ refine] GET /command/core/get-clustering-functions-and-distances (78250ms)
11:37:14.363 [ refine] POST /command/core/compute-clusters (2ms)
381012 1207 com.fasterxml.jackson.core.util.BufferRecyclers::getBufferRecycler (73 bytes) made not entrant
381013 1227 com.fasterxml.jackson.core.JsonFactory::createParser (72 bytes) made not entrant
381026 1337 com.fasterxml.jackson.core.JsonFactory::_createGenerator (77 bytes) made not entrant
381026 1350 com.fasterxml.jackson.databind.SerializerProvider::findTypedValueSerializer (108 bytes) made not entrant
381027 1144 com.fasterxml.jackson.databind.deser.BeanDeserializer::deserialize (62 bytes) made not entrant
381027 1138 com.fasterxml.jackson.core.base.ParserMinimalBase::hasToken (14 bytes) made not entrant
381028 1129 com.fasterxml.jackson.core.json.ReaderBasedJsonParser::nextToken (512 bytes) made not entrant
381032 1324 sun.nio.cs.StreamEncoder::implFlushBuffer (15 bytes) made not entrant
381038 127 ! sun.nio.cs.ISO_8859_1$Decoder::decodeArrayLoop (263 bytes) made not entrant
381043 1287 ! sun.nio.cs.StreamEncoder::write (78 bytes) made not entrant
381043 278 sun.nio.cs.SingleByte$Decoder::decodeArrayLoop (154 bytes) made not entrant
381044 1293 sun.nio.cs.UTF_8$Encoder::encodeLoop (28 bytes) made not entrant
381044 1288 sun.nio.cs.StreamEncoder::implWrite (15 bytes) made not entrant
381044 746 java.nio.CharBuffer::charAt (16 bytes) made not entrant
381044 753 % sun.nio.cs.UTF_8$Decoder::decodeArrayLoop @ 73 (691 bytes) made not entrant
381045 896 java.lang.Character::codePointAt (51 bytes) made not entrant
381045 894 % sun.nio.cs.UTF_8$Encoder::encodeArrayLoop @ 73 (489 bytes) made not entrant
381045 956 java.nio.CharBuffer::arrayOffset (35 bytes) made not entrant
381045 953 java.nio.CharBuffer::position (8 bytes) made not entrant
381046 960 java.nio.CharBuffer::position (6 bytes) made not entrant
381046 986 java.nio.CharBuffer::<init> (22 bytes) made not entrant
381046 985 java.nio.CharBuffer::limit (8 bytes) made not entrant
381046 991 java.nio.CharBuffer::hasArray (20 bytes) made not entrant
381047 987 java.nio.CharBuffer::limit (6 bytes) made not entrant
381047 1000 ! java.nio.CharBuffer::wrap (20 bytes) made not entrant
381047 1002 java.nio.CharBuffer::array (35 bytes) made not entrant
381047 1001 java.nio.HeapCharBuffer::<init> (21 bytes) made not entrant
381047 1286 sun.nio.cs.StreamEncoder::implWrite (137 bytes) made not entrant
381048 1059 % sun.nio.cs.UTF_8$Decoder::decodeArrayLoop @ 106 (691 bytes) made not entrant
381048 1070 edu.mit.simile.butterfly.LinkRewriter::write (902 bytes) made not entrant
381048 1104 ! sun.nio.cs.ISO_8859_1$Encoder::encodeArrayLoop (369 bytes) made not entrant
381048 1105 java.util.regex.Pattern$CharPropertyGreedy::match (122 bytes) made not entrant
381049 1113 ! java.nio.charset.CharsetDecoder::decode (287 bytes) made not entrant
381049 1124 % sun.nio.cs.UTF_8$Encoder::encodeArrayLoop @ 109 (489 bytes) made not entrant
381050 1118 java.io.InputStreamReader::read (11 bytes) made not entrant
381050 1126 sun.nio.cs.UTF_8$Decoder::decodeArrayLoop (691 bytes) made not entrant
381050 1125 sun.nio.cs.UTF_8$Encoder::encodeArrayLoop (489 bytes) made not entrant
381052 1377 b jdk.internal.misc.Unsafe::getCharUnaligned (12 bytes)
381059 1378 b jdk.internal.misc.Unsafe::getCharUnaligned (34 bytes)
381060 1379 n jdk.internal.misc.Unsafe::getChar (native)
381060 1380 b jdk.internal.misc.Unsafe::convEndian (16 bytes)
381061 1381 b java.lang.Character::reverseBytes (14 bytes)
381061 1382 b java.nio.ByteBufferAsCharBufferB::get (26 bytes)
381062 1383 b java.nio.ByteBufferAsCharBufferB::byteOffset (9 bytes)
381063 1384 b java.nio.Buffer::nextPutIndex (31 bytes)
381064 1385 b java.nio.HeapCharBuffer::put (16 bytes)
381066 1264 com.google.refine.browsing.util.ConjunctiveFilteredRows::visitRow (11 bytes) made not entrant
381073 1386 b java.lang.Character$UnicodeBlock::of (80 bytes)
381084 1387 b java.util.regex.Pattern$CharPropertyGreedy::match (122 bytes)
381088 1388 b java.util.regex.Pattern$BmpCharPredicate::lambda$union$2 (26 bytes)
381094 1389 b java.util.regex.Pattern$BmpCharPredicate$$Lambda$61/0x0000000800d00040::is (13 bytes)
381096 1390 b java.util.regex.Pattern$Branch::match (66 bytes)
381105 1391 b java.util.regex.Pattern$CharPredicate$$Lambda$105/0x000000080105bc40::is (13 bytes)
381111 1392 b java.util.regex.Pattern$CharPredicate::lambda$union$1 (26 bytes)
381112 1393 b java.util.regex.CharPredicates$$Lambda$104/0x000000080105b840::is (9 bytes)
381113 1394 b java.util.regex.CharPredicates::lambda$category$12 (17 bytes)
381114 1395 b java.lang.Character::codePointAt (51 bytes)
381119 1396 b com.google.common.collect.RegularImmutableMap::get (64 bytes)
381137 1397 b sun.text.normalizer.NormalizerImpl::decompose (257 bytes)
381143 1398 b com.google.refine.clustering.binning.FingerprintKeyer::stripNonDiacritics (66 bytes)
381153 1399 b java.util.regex.Pattern$BmpCharProperty::match (55 bytes)
381160 1400 b java.util.regex.Pattern$CharProperty::match (61 bytes)
381163 1401 b java.util.regex.CharPredicates$$Lambda$102/0x000000080105cc40::is (5 bytes)
381164 1402 b java.util.regex.CharPredicates::lambda$PUNCTUATION$2 (19 bytes)
381164 1403 b java.util.regex.CharPredicates$$Lambda$106/0x000000080105b040::is (5 bytes)
381165 1404 b java.util.regex.CharPredicates::lambda$WHITE_SPACE$0 (38 bytes)
381192 1405 b java.util.stream.StreamOpFlag::isKnown (19 bytes)
381217 1406 % !b com.google.refine.browsing.util.ConjunctiveFilteredRows::accept @ 20 (99 bytes)
381232 1407 b java.util.stream.AbstractPipeline::wrapSink (37 bytes)
381239 1408 b java.lang.invoke.Invokers$Holder::linkToTargetMethod (8 bytes)
381242 1409 b java.lang.invoke.LambdaForm$MH/0x0000000800ba7040::invoke (8 bytes)
381243 1410 b java.util.regex.Matcher::find (69 bytes)
381246 1411 b java.util.stream.AbstractPipeline::isParallel (8 bytes)
381246 1412 b java.util.stream.PipelineHelper::<init> (5 bytes)
381247 1413 !b java.util.regex.Pattern::matcher (44 bytes)
381253 1414 b java.util.regex.Matcher::<init> (95 bytes)
381265 1415 b java.util.regex.Pattern$1MatcherIterator::hasNext (227 bytes)
381276 1416 b java.util.regex.Pattern$Start::match (90 bytes)
381301 1417 b java.lang.invoke.DirectMethodHandle::internalMemberName (8 bytes)
381303 1418 b java.util.Collections$EmptySet::contains (2 bytes)
381305 1419 b java.util.stream.Collectors$CollectorImpl::characteristics (5 bytes)
381306 1420 b java.util.stream.StreamOpFlag::combineOpFlags (9 bytes)
381306 1421 b java.util.stream.StreamOpFlag::getMask (30 bytes)
381307 1422 b java.util.stream.AbstractPipeline::<init> (91 bytes)
381309 1423 b java.util.stream.ReferencePipeline::<init> (7 bytes)
381311 1424 b java.util.regex.Matcher::replaceAll (59 bytes)
381319 1425 b java.util.stream.ReferencePipeline$StatefulOp::<init> (29 bytes)
381327 1426 b java.util.Spliterators$IteratorSpliterator::characteristics (5 bytes)
381327 1427 b java.util.Iterator::forEachRemaining (30 bytes)
381328 1428 b java.util.ArrayList::forEach (74 bytes)
381351 1429 b java.util.regex.Matcher::getTextLength (10 bytes)
381381 1430 b java.lang.StringLatin1::trim (76 bytes)
381395 1431 b java.lang.String::toLowerCase (29 bytes)
381396 1432 b java.util.TimSort::sort (229 bytes)
381397 1433 b java.lang.String::toLowerCase (8 bytes)
381398 1434 b java.util.StringJoiner::toString (181 bytes)
381400 1435 b java.lang.String::compareTo (9 bytes)
381401 1436 b java.lang.invoke.DirectMethodHandle$Holder::invokeStatic (14 bytes)
381408 1437 b java.lang.String::trim (35 bytes)
381409 1438 b java.lang.invoke.Invokers$Holder::linkToTargetMethod (9 bytes)
381410 1439 b java.util.Arrays::rangeCheck (74 bytes)
381410 1440 b java.util.stream.AbstractPipeline::getStreamAndOpFlags (5 bytes)
381411 1441 b java.lang.String::valueOf (15 bytes)
381411 1442 b java.util.stream.StreamSupport::stream (19 bytes)
381413 1443 b java.util.stream.StreamOpFlag::fromCharacteristics (37 bytes)
381414 1444 b java.util.stream.ReferencePipeline$Head::<init> (8 bytes)
381415 1445 b java.util.stream.ReferencePipeline::<init> (8 bytes)
381416 1446 b java.util.stream.AbstractPipeline::<init> (55 bytes)
381417 1447 b java.util.stream.AbstractPipeline::sourceSpliterator (265 bytes)
381425 1448 b java.util.stream.AbstractPipeline::wrapAndCopyInto (18 bytes)
381437 1449 b java.util.stream.AbstractPipeline::copyInto (54 bytes)
381452 1450 b java.util.Spliterator::getExactSizeIfKnown (25 bytes)
381458 1451 b java.util.stream.AbstractPipeline::evaluate (94 bytes)
381460 1452 b java.util.stream.ReduceOps$3ReducingSink::accept (15 bytes)
381462 1453 b java.util.StringJoiner::add (104 bytes)
381464 1454 b java.lang.invoke.Invokers$Holder::linkToTargetMethod (11 bytes)
381465 1455 b java.lang.invoke.DirectMethodHandle$Holder::invokeStatic (18 bytes)
381466 1456 b java.util.stream.Collectors$CollectorImpl::<init> (32 bytes)
381468 1457 b java.util.stream.ReferencePipeline::collect (124 bytes)
381478 1458 b java.util.stream.ReduceOps::makeRef (42 bytes)
381479 1459 b java.util.stream.Collectors$CollectorImpl::supplier (5 bytes)
381479 1460 b java.util.stream.Collectors$CollectorImpl::accumulator (5 bytes)
381480 1461 b java.util.stream.Collectors$CollectorImpl::combiner (5 bytes)
381480 1462 b java.util.stream.ReduceOps$3::<init> (28 bytes)
381482 1463 b java.util.stream.ReduceOps$ReduceOp::<init> (10 bytes)
381483 1464 b java.util.stream.Collectors::joining (34 bytes)
381484 1465 b java.util.TreeMap::compare (32 bytes)
381485 1466 b com.google.refine.clustering.binning.FingerprintKeyer::key (59 bytes)
381506 1467 b com.google.refine.clustering.binning.FingerprintKeyer::normalize (43 bytes)
381512 1468 b com.google.refine.clustering.binning.FingerprintKeyer::stripDiacritics (23 bytes)
381514 1469 b java.text.Normalizer::normalize (11 bytes)
381516 1470 b sun.text.normalizer.NormalizerBase::normalize (10 bytes)
381519 1471 b sun.text.normalizer.NormalizerBase::toMode (83 bytes)
381525 1472 b sun.text.normalizer.NormalizerBase::normalize (10 bytes)
381527 1473 b sun.text.normalizer.NormalizerBase$NFKDMode::getNormalizer2 (23 bytes)
381528 1474 b sun.text.normalizer.Norm2AllModes$Normalizer2WithImpl::normalize (6 bytes)
381530 1475 b sun.text.normalizer.Normalizer2::normalize (96 bytes)
381532 1476 b sun.text.normalizer.Norm2AllModes$DecomposeNormalizer2::spanQuickCheckYes (17 bytes)
381533 1477 b java.util.regex.Pattern::splitAsStream (20 bytes)
381536 1478 b java.util.regex.Pattern$1MatcherIterator::<init> (15 bytes)
381543 1479 b java.util.Spliterators::spliteratorUnknownSize (16 bytes)
381544 1480 b java.util.Spliterators$IteratorSpliterator::<init> (31 bytes)
381545 1481 b java.util.stream.ReferencePipeline::sorted (5 bytes)
381548 1482 b java.util.stream.SortedOps::makeRef (9 bytes)
381550 1483 b java.util.stream.SortedOps$OfRef::<init> (30 bytes)
381553 1484 b java.util.Comparator::naturalOrder (4 bytes)
381558 1485 b java.util.stream.ReferencePipeline::distinct (5 bytes)
381561 1486 b java.util.stream.DistinctOps::makeRef (19 bytes)
381563 1487 b java.util.stream.DistinctOps$1::<init> (8 bytes)
381565 1488 b java.util.stream.Collectors::joining (9 bytes)
381566 1489 b java.util.regex.Pattern$1MatcherIterator::next (47 bytes)
381567 1490 b java.util.stream.DistinctOps$1$1::accept (68 bytes)
381836 1491 b java.util.TreeMap::getEntry (84 bytes)
381852 1492 b java.util.TreeMap::containsKey (14 bytes)
381853 1493 b java.util.TreeMap::get (19 bytes)
381946 1494 % b java.util.AbstractCollection::toArray @ 15 (70 bytes)
381962 1432 java.util.TimSort::sort (229 bytes) made not entrant
381963 1495 b java.util.TreeMap::size (5 bytes)
381965 1496 b com.google.refine.clustering.binning.BinningClusterer$SizeComparator::compare (13 bytes)
381966 1497 b com.google.refine.clustering.binning.BinningClusterer$SizeComparator::compare (133 bytes)
381967 1498 % b java.util.TimSort::countRunAndMakeAscending @ 92 (128 bytes)
381973 1498 % java.util.TimSort::countRunAndMakeAscending @ 92 (128 bytes) made not entrant
381975 1338 com.fasterxml.jackson.core.json.WriterBasedJsonGenerator::<init> (53 bytes) made not entrant
381975 1344 com.fasterxml.jackson.databind.ser.DefaultSerializerProvider$Impl::createInstance (11 bytes) made not entrant
381976 1330 com.fasterxml.jackson.databind.ser.impl.ReadOnlyClassToSerializerMap::typedValueSerializer (58 bytes) made
not entrant
381983 1499 b java.util.stream.ReduceOps$ReduceOp::evaluateSequential (18 bytes)
381984 1500 b java.util.stream.ReduceOps$3::makeSink (5 bytes)
381992 1501 b java.util.stream.ReduceOps$3::makeSink (20 bytes)
381993 1502 b java.util.stream.ReduceOps$3ReducingSink::<init> (20 bytes)
381994 1503 b java.util.stream.ReduceOps$Box::<init> (5 bytes)
381997 1504 b java.util.stream.ReferencePipeline$2$1::accept (27 bytes)
381998 1505 % b java.util.ArrayList$ArrayListSpliterator::forEachRemaining @ 81 (127 bytes)
382004 1505 % java.util.ArrayList$ArrayListSpliterator::forEachRemaining @ 81 (127 bytes) made not entrant
382008 1506 b java.util.stream.Sink::end (1 bytes)
382008 1507 b java.util.stream.ReduceOps$Box::get (5 bytes)
382009 1278 ! com.fasterxml.jackson.databind.ser.impl.IndexedListSerializer::serializeContents (188 bytes) made not entrant
11:37:15.369 [ compute-clusters_command] computed clusters [binning] in 997ms (1006ms)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment