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Created March 1, 2019 07:43
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rdkit (rdkit/rdkit/rdkit) on macOS 10.13.6 - Homebrew build logs
Homebrew build logs for rdkit/rdkit/rdkit on macOS 10.13.6
Build date: 2019-03-01 08:38:43
HOMEBREW_VERSION: 2.0.2-101-g5eb79b5
ORIGIN: https://github.com/Homebrew/brew
HEAD: 5eb79b552c50abb0c35fdd8f70e9cccbc391598e
Last commit: 18 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 3f65e145eeead3d53599fc4f60fb86dc5b674a9c
Core tap last commit: 3 hours ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_DEV_CMD_RUN: 1
HOMEBREW_DISPLAY: /private/tmp/com.apple.launchd.sUFlsjYAcZ/org.macosforge.xquartz:0
HOMEBREW_LOGS: /Users/tgg/Library/Logs/Homebrew
CPU: dodeca-core 64-bit kabylake
Homebrew Ruby: 2.3.7 => /System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/bin/ruby
Clang: 10.0 build 1000
Git: 2.17.1 => /Library/Developer/CommandLineTools/usr/bin/git
Curl: 7.54.0 => /usr/bin/curl
Java: 1.8.0_131, 1.8.0_45, 1.7.0_79
macOS: 10.13.6-x86_64
CLT: 10.0.0.0.1.1535735448
Xcode: 10.1
XQuartz: 2.7.11 => /opt/X11
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!
Warning: "config" scripts exist outside your system or Homebrew directories.
`./configure` scripts often look for *-config scripts to determine if
software packages are installed, and what additional flags to use when
compiling and linking.
Having additional scripts in your path can confuse software installed via
Homebrew if the config script overrides a system or Homebrew provided
script of the same name. We found the following "config" scripts:
/anaconda3/bin/icu-config
/anaconda3/bin/krb5-config
/anaconda3/bin/freetype-config
/anaconda3/bin/xslt-config
/anaconda3/bin/libpng16-config
/anaconda3/bin/python3.7-config
/anaconda3/bin/libpng-config
/anaconda3/bin/xml2-config
/anaconda3/bin/python3.7m-config
/anaconda3/bin/python3-config
/anaconda3/bin/curl-config
/anaconda3/bin/ncursesw6-config
/anaconda3/bin/pcre-config
/Users/tgg/Github/emsdk/emscripten/1.38.18/em-config
/Users/tgg/Github/emsdk/clang/e1.38.18_64bit/llvm-config
rdkit/rdkit/rdkit --with-python3
Formula: rdkit
Tap: rdkit/rdkit
Path: /usr/local/Homebrew/Library/Taps/rdkit/homebrew-rdkit/Formula/rdkit.rb
2019-03-01 08:33:45 +0100
cmake
-DCMAKE_C_FLAGS_RELEASE=-DNDEBUG
-DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG
-DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/rdkit/HEAD-fa61fa7
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_FIND_FRAMEWORK=LAST
-DCMAKE_VERBOSE_MAKEFILE=ON
-Wno-dev
-DRDK_INSTALL_INTREE=OFF
-DRDK_BUILD_CPP_TESTS=OFF
-DRDK_INSTALL_STATIC_LIBS=OFF
-DPYTHON_EXECUTABLE='/usr/local/opt/python/bin/python3'
-DPYTHON_INCLUDE_DIR='/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m'
-DPYTHON_NUMPY_INCLUDE_PATH='/usr/local/lib/python3.7/site-packages/numpy/core/include'
.
-- The C compiler identification is AppleClang 10.0.0.10001044
-- The CXX compiler identification is AppleClang 10.0.0.10001044
-- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang
-- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++
-- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
Downloading https://github.com/catchorg/Catch2/archive/v2.1.2.tar.gz...
CATCH: /tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include
-- Found PythonInterp: /usr/local/opt/python/bin/python3 (found version "3.7.2")
-- Found PythonLibs: /usr/local/Frameworks/Python.framework/Versions/3.7/lib/libpython3.7m.dylib (found version "3.7.2")
CMake Warning at /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/FindBoost.cmake:1775 (message):
No header defined for python-py37; skipping header check
Call Stack (most recent call first):
CMakeLists.txt:237 (find_package)
Python Install directory /usr/local/Cellar/rdkit/HEAD-fa61fa7/lib/python3.7/site-packages
PYTHON Py_ENABLE_SHARED: 0
PYTHON USING LINK LINE: -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk
-- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Boost version: 1.68.0
-- Found the following Boost libraries:
-- serialization
== Using strict rotor definition
-- maeparser include dir set as 'maeparser_INCLUDE_DIRS-NOTFOUND'
-- maeparser libraries set as 'maeparser_LIBRARIES-NOTFOUND'
-- Could NOT find maeparser (missing: maeparser_INCLUDE_DIRS maeparser_LIBRARIES)
Downloading https://github.com/schrodinger/maeparser/archive/v1.0.1.tar.gz...
-- coordgen include dir set as coordgen_INCLUDE_DIRS-NOTFOUND
-- coordgen libraries set as 'coordgen_LIBRARIES-NOTFOUND'
-- coordgen templates file set as 'coordgen_TEMPLATE_FILE-NOTFOUND'
-- Could NOT find coordgen (missing: coordgen_INCLUDE_DIRS coordgen_LIBRARIES coordgen_TEMPLATE_FILE)
Downloading https://github.com/schrodinger/coordgenlibs/archive/v1.2.tar.gz...
== Updating Filters.cpp from pains file
== Done updating pains files
Downloading https://github.com/Tencent/rapidjson/archive/v1.1.0.tar.gz...
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/rdkit-20190301-1994-10cstk
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format CMakeCCompilerId.c
superenv added: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
superenv executed: clang -Wno-parentheses -Wno-logical-op-parentheses -Wno-format CMakeCCompilerId.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format CMakeCXXCompilerId.cpp
superenv added: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
superenv executed: clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format CMakeCXXCompilerId.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_d57fc.dir/testCCompiler.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/testCCompiler.c
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_d57fc.dir/testCCompiler.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/testCCompiler.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d57fc.dir/testCCompiler.c.o -o cmTC_d57fc
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d57fc.dir/testCCompiler.c.o -o cmTC_d57fc -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_ec337.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/CMakeCCompilerABI.c
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_ec337.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/CMakeCCompilerABI.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_ec337.dir/CMakeCCompilerABI.c.o -o cmTC_ec337
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_ec337.dir/CMakeCCompilerABI.c.o -o cmTC_ec337 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c11 -o CMakeFiles/cmTC_7bb9e.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c11 -o CMakeFiles/cmTC_7bb9e.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_7bb9e.dir/feature_tests.c.o -o cmTC_7bb9e
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_7bb9e.dir/feature_tests.c.o -o cmTC_7bb9e -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c99 -o CMakeFiles/cmTC_d696a.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c99 -o CMakeFiles/cmTC_d696a.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d696a.dir/feature_tests.c.o -o cmTC_d696a
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d696a.dir/feature_tests.c.o -o cmTC_d696a -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c90 -o CMakeFiles/cmTC_9adaa.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c90 -o CMakeFiles/cmTC_9adaa.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_9adaa.dir/feature_tests.c.o -o cmTC_9adaa
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_9adaa.dir/feature_tests.c.o -o cmTC_9adaa -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_29179.dir/testCXXCompiler.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/testCXXCompiler.cxx
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_29179.dir/testCXXCompiler.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/testCXXCompiler.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_29179.dir/testCXXCompiler.cxx.o -o cmTC_29179
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_29179.dir/testCXXCompiler.cxx.o -o cmTC_29179 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_7ccea.dir/CMakeCXXCompilerABI.cpp.o -c /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/CMakeCXXCompilerABI.cpp
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_7ccea.dir/CMakeCXXCompilerABI.cpp.o -c /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/CMakeCXXCompilerABI.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_7ccea.dir/CMakeCXXCompilerABI.cpp.o -o cmTC_7ccea
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_7ccea.dir/CMakeCXXCompilerABI.cpp.o -o cmTC_7ccea -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++1z -o CMakeFiles/cmTC_8fdd7.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++1z -o CMakeFiles/cmTC_8fdd7.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_8fdd7.dir/feature_tests.cxx.o -o cmTC_8fdd7
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_8fdd7.dir/feature_tests.cxx.o -o cmTC_8fdd7 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++14 -o CMakeFiles/cmTC_e911c.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++14 -o CMakeFiles/cmTC_e911c.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_e911c.dir/feature_tests.cxx.o -o cmTC_e911c
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_e911c.dir/feature_tests.cxx.o -o cmTC_e911c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++11 -o CMakeFiles/cmTC_adf11.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++11 -o CMakeFiles/cmTC_adf11.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_adf11.dir/feature_tests.cxx.o -o cmTC_adf11
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_adf11.dir/feature_tests.cxx.o -o cmTC_adf11 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++98 -o CMakeFiles/cmTC_1c499.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++98 -o CMakeFiles/cmTC_1c499.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1c499.dir/feature_tests.cxx.o -o cmTC_1c499
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1c499.dir/feature_tests.cxx.o -o cmTC_1c499 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_de5e1.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckIncludeFile.c
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clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_de5e1.dir/CheckIncludeFile.c.o -o cmTC_de5e1
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clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d11f8.dir/CheckIncludeFile.c.o -o cmTC_d11f8
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clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_65132.dir/CheckIncludeFile.c.o -o cmTC_65132
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superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_65132.dir/CheckIncludeFile.c.o -o cmTC_65132 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
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clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_f5dd5.dir/CMAKE_SIZEOF_UNSIGNED_SHORT.c.o -o cmTC_f5dd5
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superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_f5dd5.dir/CMAKE_SIZEOF_UNSIGNED_SHORT.c.o -o cmTC_f5dd5 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
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superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_2c451.dir/TestEndianess.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/TestEndianess.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_2c451.dir/TestEndianess.c.o -o cmTC_2c451
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_2c451.dir/TestEndianess.c.o -o cmTC_2c451 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_78e75.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckIncludeFile.c
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_78e75.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckIncludeFile.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_78e75.dir/CheckIncludeFile.c.o -o cmTC_78e75
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_78e75.dir/CheckIncludeFile.c.o -o cmTC_78e75 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
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superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_1ae71.dir/CheckSymbolExists.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckSymbolExists.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include
clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1ae71.dir/CheckSymbolExists.c.o -o cmTC_1ae71
superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1ae71.dir/CheckSymbolExists.c.o -o cmTC_1ae71 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
2019-03-01 08:34:01 +0100
make
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/usr/local/Cellar/cmake/3.13.4/bin/cmake -S/tmp/rdkit-20190301-1994-10cstk -B/tmp/rdkit-20190301-1994-10cstk --check-build-system CMakeFiles/Makefile.cmake 0
/usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_progress_start /tmp/rdkit-20190301-1994-10cstk/CMakeFiles /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/progress.marks
/Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 all
/Library/Developer/CommandLineTools/usr/bin/make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/catch /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/catch /tmp/rdkit-20190301-1994-10cstk/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color=
Scanning dependencies of target catch
Scanning dependencies of target inchi_support
Scanning dependencies of target coordgen_support
/Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build
/Library/Developer/CommandLineTools/usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
/Library/Developer/CommandLineTools/usr/bin/make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build
make[2]: Nothing to be done for `External/CoordGen/CMakeFiles/coordgen_support.dir/build'.
cd /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E copy /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API/python/noinchi.py /tmp/rdkit-20190301-1994-10cstk/rdkit/Chem/inchi.py
make[2]: Nothing to be done for `External/catch/CMakeFiles/catch.dir/build'.
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[ 0%] Built target coordgen_support
/Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/maeparser.dir/build.make External/CoordGen/CMakeFiles/maeparser.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/CMakeFiles/maeparser.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
[ 0%] Built target inchi_support
Scanning dependencies of target hc
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
[ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o
[ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/hc.c
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/hcdriver.c
[ 1%] Linking C shared library ../../../../lib/libRDKithc.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../../lib/libRDKithc.2019.03.1dev1.dylib -install_name @rpath/libRDKithc.1.dylib CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.2019.03.1dev1.dylib ../../../../lib/libRDKithc.1.dylib ../../../../lib/libRDKithc.dylib
[ 1%] Built target hc
Scanning dependencies of target RDGeneral
/Library/Developer/CommandLineTools/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/Invariant.cpp
[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/types.cpp
[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/utils.cpp
[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/RDLog.cpp
[ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o
[ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o
[ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/LocaleSwitcher.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/versions.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/Dict.cpp
Scanning dependencies of target maeparser
/Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/maeparser.dir/build.make External/CoordGen/CMakeFiles/maeparser.dir/build
[ 3%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o
[ 3%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/MaeBlock.cpp
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/Buffer.cpp
[ 4%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o
[ 4%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/Reader.cpp
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/MaeParser.cpp
[ 4%] Linking CXX shared library ../../lib/libRDKitRDGeneral.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDGeneral.1.dylib CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.1.dylib ../../lib/libRDKitRDGeneral.dylib
[ 4%] Built target RDGeneral
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target EigenSolvers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
[ 4%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
Scanning dependencies of target SimDivPickers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
[ 4%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/DistPicker.cpp
[ 4%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/MaxMinPicker.cpp
[ 5%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/HierarchicalClusterPicker.cpp
Scanning dependencies of target DataStructs
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
[ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/Bi[ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o
tVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/BitVect.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/SparseBitVect.cpp
[ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o
[ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Utils.cpp
[ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/ExplicitBitVect.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/base64.cpp
Scanning dependencies of target Catalogs
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
Scanning dependencies of target RDBoost
/Library/Developer/CommandLineTools/usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
[ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/Catalog.cpp
[ 6%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap.cpp
[ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/BitOps.cpp
[ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CatalogParams.cpp
[ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/DiscreteDistMat.cpp
[ 7%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CatalogEntry.cpp
[ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/DiscreteValueVect.cpp
[ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/FPBReader.cpp
[ 8%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitSimDivPickers.2019.03.1dev1.dylib -install_name @rpath/libRDKitSimDivPickers.1.dylib CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKithc.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.2019.03.1dev1.dylib ../../lib/libRDKitSimDivPickers.1.dylib ../../lib/libRDKitSimDivPickers.dylib
[ 8%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1
[ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/MultiFPBReader.cpp
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib -install_name @rpath/libRDKitEigenSolvers.1.dylib CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 8%] Built target SimDivPickers
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.1.dylib ../../../lib/libRDKitEigenSolvers.dylib
[ 8%] Built target EigenSolvers
[ 8%] Linking CXX shared library ../../lib/libRDKitCatalogs.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitCatalogs.2019.03.1dev1.dylib -install_name @rpath/libRDKitCatalogs.1.dylib CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../lib/libRDKitCatalogs.1.dylib ../../lib/libRDKitCatalogs.dylib
[ 8%] Built target Catalogs
[ 8%] Linking CXX shared library ../../lib/libRDKitRDBoost.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDBoost.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDBoost.1.dylib CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.2019.03.1dev1.dylib ../../lib/libRDKitRDBoost.1.dylib ../../lib/libRDKitRDBoost.dylib
[ 8%] Built target RDBoost
/Library/Developer/CommandLineTools/usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
[ 8%] Linking CXX shared library ../../lib/libRDKitmaeparser.dylib
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/maeparser.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitmaeparser.2019.03.1dev1.dylib -install_name @rpath/libRDKitmaeparser.1.dylib CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../lib/libRDKitmaeparser.1.dylib ../../lib/libRDKitmaeparser.dylib
[ 8%] Built target maeparser
/Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/coordgen.dir/build.make External/CoordGen/CMakeFiles/coordgen.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/CMakeFiles/coordgen.dir/DependInfo.cmake --color=
Scanning dependencies of target coordgen
/Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/coordgen.dir/build.make External/CoordGen/CMakeFiles/coordgen.dir/build
[ 8%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/CoordgenFragmentBuilder.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmentBuilder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenFragmentBuilder.cpp
[ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/CoordgenFragmenter.cpp.o
[ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/CoordgenMinimizer.cpp.o
[ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/CoordgenMacrocycleBuilder.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenMinimizer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenMinimizer.cpp
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenMacrocycleBuilder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenMacrocycleBuilder.cpp
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmenter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenFragmenter.cpp
[ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizer.cpp.o
[ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerAtom.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerAtom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerAtom.cpp
[ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerBond.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizer.cpp
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerBond.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerBond.cpp
[ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerFragment.cpp.o
[ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMarchingSquares.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerFragment.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerFragment.cpp
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMarchingSquares.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerMarchingSquares.cpp
[ 10%] Linking CXX shared library ../../lib/libRDKitDataStructs.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib -install_name @rpath/libRDKitDataStructs.1.dylib CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.1.dylib ../../lib/libRDKitDataStructs.dylib
[ 10%] Built target DataStructs
[ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMolecule.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMolecule.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerMolecule.cpp
Scanning dependencies of target Clustering
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
Scanning dependencies of target rdBase
/Library/Developer/CommandLineTools/usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
[ 11%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/Clustering.cpp
[ 12%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap/RDBase.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Geometry /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Geometry /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
/Library/Developer/CommandLineTools/usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target RDGeometryLib
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
[ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/point.cpp
Scanning dependencies of target InfoTheory
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
Scanning dependencies of target rdMetricMatrixCalc
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
[ 12%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/InfoBitRanker.cpp
[ 13%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
Scanning dependencies of target rdSimDivPickers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
[ 14%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
Scanning dependencies of target cDataStructs
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/DataStructs.cpp
[ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Transform2D.cpp
[ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
[ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Transform3D.cpp
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/DiscreteValueVect.cpp
[ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
[ 16%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitInfoTheory.2019.03.1dev1.dylib -install_name @rpath/libRDKitInfoTheory.1.dylib CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 16%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKithc.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.2019.03.1dev1.dylib ../../../lib/libRDKitInfoTheory.1.dylib ../../../lib/libRDKitInfoTheory.dylib
[ 16%] Built target InfoTheory
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/SparseIntVect.cpp
[ 16%] Built target Clustering
[ 17%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidue.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidue.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerResidue.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
[ 17%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/UniformGrid3D.cpp
[ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_SparseBV.cpp
Scanning dependencies of target rdInfoTheory
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
[ 18%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidueInteraction.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidueInteraction.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerResidueInteraction.cpp
[ 18%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp
[ 18%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerRing.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerRing.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerRing.cpp
[ 18%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 18%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/GridUtils.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
[ 18%] Built target rdMetricMatrixCalc
[ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp
[ 19%] Linking CXX shared library ../../lib/libRDKitcoordgen.dylib
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/coordgen.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitcoordgen.2019.03.1dev1.dylib -install_name @rpath/libRDKitcoordgen.1.dylib CMakeFiles/coordgen.dir/coordgen/CoordgenFragmentBuilder.cpp.o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmenter.cpp.o CMakeFiles/coordgen.dir/coordgen/CoordgenMacrocycleBuilder.cpp.o CMakeFiles/coordgen.dir/coordgen/CoordgenMinimizer.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizer.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerAtom.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerBond.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerFragment.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerRing.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitmaeparser.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../lib/libRDKitcoordgen.1.dylib ../../lib/libRDKitcoordgen.dylib
[ 19%] Built target coordgen
[ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
[ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp
[ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_BitOps.cpp
[ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_FPB.cpp
[ 19%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSimDivPickers.2019.03.1dev1.dylib ../../../lib/libRDKithc.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
Scanning dependencies of target cQuantize
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
[ 19%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data/cQuantize.cpp
[ 19%] Built target rdSimDivPickers
[ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_Utils.cpp
[ 20%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDGeometryLib.1.dylib CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitRDGeometryLib.1.dylib ../../lib/libRDKitRDGeometryLib.dylib
[ 20%] Built target RDGeometryLib
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target Alignment
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
[ 20%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DAlignment_EXPORTS -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/AlignPoints.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
[ 20%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitInfoTheory.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 20%] Built target rdInfoTheory
[ 20%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitInfoTheory.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 20%] Built target cQuantize
Scanning dependencies of target GraphMol
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
Scanning dependencies of target ChemicalFeatures
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
Scanning dependencies of target rdGeometry
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
[ 20%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/FreeChemicalFeature.cpp
[ 20%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap/Point.cpp
[ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap/UniformGrid3D.cpp
[ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap/rdGeometry.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Atom.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/QueryAtom.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/QueryBond.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Bond.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolOps.cpp
[ 22%] Linking CXX shared library ../../../lib/libRDKitAlignment.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib -install_name @rpath/libRDKitAlignment.1.dylib CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.1.dylib ../../../lib/libRDKitAlignment.dylib
[ 22%] Built target Alignment
[ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FindRings.cpp
[ 24%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 24%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitChemicalFeatures.2019.03.1dev1.dylib -install_name @rpath/libRDKitChemicalFeatures.1.dylib CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 24%] Linking CXX shared module ../../../rdkit/rdBase.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.2019.03.1dev1.dylib ../../lib/libRDKitChemicalFeatures.1.dylib ../../lib/libRDKitChemicalFeatures.dylib
[ 24%] Built target ChemicalFeatures
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ROMol.cpp
[ 24%] Built target cDataStructs
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RWMol.cpp
[ 24%] Built target rdBase
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PeriodicTable.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/atomic_data.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/QueryOps.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolPickler.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Canon.cpp
Scanning dependencies of target rdAlignment
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
[ 25%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/AtomIterators.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/BondIterators.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Aromaticity.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Kekulize.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDiscriminators.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ConjugHybrid.cpp
[ 27%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 27%] Built target rdGeometry
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/AddHs.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Matrices.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Chirality.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RingInfo.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Conformer.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Renumber.cpp
[ 28%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 28%] Built target rdAlignment
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/AdjustQuery.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Resonance.cpp
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StereoGroup.cpp
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/new_canon.cpp
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Sgroup.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Sgroup.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Sgroup.cpp
[ 29%] Linking CXX shared library ../../lib/libRDKitGraphMol.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitGraphMol.2019.03.1dev1.dylib -install_name @rpath/libRDKitGraphMol.1.dylib CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/Sgroup.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../lib/libRDKitGraphMol.1.dylib ../../lib/libRDKitGraphMol.dylib
[ 29%] Built target GraphMol
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
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/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target Trajectory
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
Scanning dependencies of target MolCatalog
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
[ 30%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory/Trajectory.cpp
[ 30%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
[ 30%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
Scanning dependencies of target Subgraphs
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
Scanning dependencies of target MolInterchange
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build
Scanning dependencies of target SubstructMatch
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
Scanning dependencies of target PartialCharges
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
[ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs/Subgraphs.cpp
[ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
[ 30%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/rapidjson-1.1.0/include -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Parser.cpp
Scanning dependencies of target MolTransforms
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
[ 30%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct/SubstructMatch.cpp
[ 31%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/GasteigerCharges.cpp
[ 31%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/MolTransforms.cpp
Scanning dependencies of target rdChemicalFeatures
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
Scanning dependencies of target rdqueries
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
[ 31%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
[ 31%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/rdqueries.cpp
Scanning dependencies of target SmilesParse
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/SmilesParse.cpp
[ 31%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct/SubstructUtils.cpp
[ 31%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
[ 31%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/GasteigerParams.cpp
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolCatalog.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolCatalog.1.dylib CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitMolCatalog.1.dylib ../../../lib/libRDKitMolCatalog.dylib
[ 31%] Built target MolCatalog
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
[ 31%] Linking CXX shared library ../../../lib/libRDKitTrajectory.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1
[ 31%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib -install_name @rpath/libRDKitTrajectory.1.dylib CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 31%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib -install_name @rpath/libRDKitSubgraphs.1.dylib CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.1.dylib ../../../lib/libRDKitTrajectory.dylib
[ 31%] Built target Trajectory
[ 32%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/rapidjson-1.1.0/include -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Writer.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.1.dylib ../../../lib/libRDKitSubgraphs.dylib
[ 32%] Built target Subgraphs
[ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/SmilesWrite.cpp
[ 34%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Queries.cpp
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/SmartsWrite.cpp
[ 34%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib -install_name @rpath/libRDKitSubstructMatch.1.dylib CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.1.dylib ../../../lib/libRDKitSubstructMatch.dylib
[ 34%] Built target SubstructMatch
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
[ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/smarts.tab.cpp
[ 35%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolTransforms.1.dylib CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.1.dylib ../../../lib/libRDKitMolTransforms.dylib
[ 35%] Built target MolTransforms
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/smiles.tab.cpp
Scanning dependencies of target Optimizer
/Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
[ 35%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer/BFGSOpt.cpp
[ 35%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib -install_name @rpath/libRDKitPartialCharges.1.dylib CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
Scanning dependencies of target rdtrajectory
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
[ 35%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Trajectory.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../lib/libRDKitPartialCharges.1.dylib ../../../lib/libRDKitPartialCharges.dylib
[ 35%] Built target PartialCharges
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
[ 36%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer/LinearSearch.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
[ 36%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/rdTrajectory.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolInterchange.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolInterchange.1.dylib CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.2019.03.1dev1.dylib ../../../lib/libRDKitMolInterchange.1.dylib ../../../lib/libRDKitMolInterchange.dylib
[ 36%] Built target MolInterchange
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color=
[ 36%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitChemicalFeatures.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 36%] Built target rdChemicalFeatures
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolTransforms
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
[ 36%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
[ 36%] Linking CXX shared library ../../../lib/libRDKitOptimizer.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib -install_name @rpath/libRDKitOptimizer.1.dylib CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
Scanning dependencies of target ShapeHelpers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.1.dylib ../../../lib/libRDKitOptimizer.dylib
[ 36%] Built target Optimizer
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ForceField /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ForceField /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
[ 37%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
[ 37%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
Scanning dependencies of target rdMolInterchange
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build
[ 37%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolInterchange_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/rapidjson-1.1.0/include -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp
Scanning dependencies of target rdPartialCharges
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
[ 37%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
[ 37%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 37%] Built target rdqueries
[ 37%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib -install_name @rpath/libRDKitSmilesParse.1.dylib CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
Scanning dependencies of target ForceField
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.1.dylib ../../../lib/libRDKitSmilesParse.dylib
[ 37%] Built target SmilesParse
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
[ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/ForceField.cpp
[ 39%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 39%] Built target rdtrajectory
[ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/AngleBend.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemTransforms
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
Scanning dependencies of target MolChemicalFeatures
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
[ 40%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
Scanning dependencies of target FilterCatalog
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
[ 41%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
Scanning dependencies of target FragCatalog
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
[ 41%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Filters.cpp
[ 41%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
Scanning dependencies of target Fingerprints
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
[ 41%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Fingerprints.cpp
[ 41%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitShapeHelpers.2019.03.1dev1.dylib -install_name @rpath/libRDKitShapeHelpers.1.dylib CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
Scanning dependencies of target ReducedGraphs
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitShapeHelpers.1.dylib ../../../lib/libRDKitShapeHelpers.dylib
[ 41%] Built target ShapeHelpers
[ 41%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/BondStretch.cpp
[ 41%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
[ 41%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
[ 41%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
[ 42%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolInterchange.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 42%] Built target rdMolInterchange
[ 42%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
[ 42%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 42%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/Nonbonded.cpp
[ 42%] Built target rdPartialCharges
[ 42%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
[ 42%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
[ 43%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
[ 44%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 44%] Built target rdMolTransforms
[ 45%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/Inversion.cpp
[ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
[ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
[ 46%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitReducedGraphs.2019.03.1dev1.dylib -install_name @rpath/libRDKitReducedGraphs.1.dylib CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.2019.03.1dev1.dylib ../../../lib/libRDKitReducedGraphs.1.dylib ../../../lib/libRDKitReducedGraphs.dylib
[ 46%] Built target ReducedGraphs
[ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragCatParams.cpp
[ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
[ 46%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/TorsionAngle.cpp
[ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
[ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
Scanning dependencies of target rdShapeHelpers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
[ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
[ 47%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib -install_name @rpath/libRDKitChemTransforms.1.dylib CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 47%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitChemTransforms.1.dylib ../../../lib/libRDKitChemTransforms.dylib
[ 47%] Built target ChemTransforms
[ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/AtomPairs.cpp
[ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/DistanceConstraint.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
[ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/MACCS.cpp
[ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/AngleConstraint.cpp
Scanning dependencies of target rdReducedGraphs
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
[ 48%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
[ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp
[ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/TorsionConstraint.cpp
[ 48%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolChemicalFeatures.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolChemicalFeatures.1.dylib CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.2019.03.1dev1.dylib ../../../lib/libRDKitMolChemicalFeatures.1.dylib ../../../lib/libRDKitMolChemicalFeatures.dylib
[ 48%] Built target MolChemicalFeatures
[ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp
[ 48%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitFragCatalog.2019.03.1dev1.dylib -install_name @rpath/libRDKitFragCatalog.1.dylib CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitFragCatalog.1.dylib ../../../lib/libRDKitFragCatalog.dylib
[ 48%] Built target FragCatalog
[ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/PositionConstraint.cpp
[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/MorganGenerator.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
[ 50%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
[ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/Params.cpp
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib -install_name @rpath/libRDKitFilterCatalog.1.dylib CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitFilterCatalog.1.dylib ../../../lib/libRDKitFilterCatalog.dylib
[ 50%] Built target FilterCatalog
[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp
Scanning dependencies of target rdchem
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/FingerprintUtil.cpp
[ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/rdchem.cpp
Scanning dependencies of target rdMolChemicalFeatures
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
[ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
[ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/AngleBend.cpp
[ 51%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
[ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitShapeHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
[ 51%] Built target rdShapeHelpers
[ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Table.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Table.cpp
[ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/BondStretch.cpp
[ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
[ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Atom.cpp
[ 51%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitReducedGraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 51%] Built target rdReducedGraphs
[ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
[ 52%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Bond.cpp
[ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/StretchBend.cpp
[ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Mol.cpp
[ 53%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp
[ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Conformer.cpp
[ 54%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/OopBend.cpp
[ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/RingInfo.cpp
[ 54%] Linking CXX shared library ../../../lib/libRDKitFingerprints.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib -install_name @rpath/libRDKitFingerprints.1.dylib CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../lib/libRDKitFingerprints.1.dylib ../../../lib/libRDKitFingerprints.dylib
[ 54%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/TorsionAngle.cpp
[ 54%] Built target Fingerprints
[ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/EditableMol.cpp
[ 54%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/Nonbonded.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color=
[ 54%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/DistanceConstraint.cpp
[ 54%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolChemicalFeatures.2019.03.1dev1.dylib ../../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 54%] Built target rdMolChemicalFeatures
[ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/MonomerInfo.cpp
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target rdFingerprintGenerator
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build
[ 54%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp
Scanning dependencies of target SubstructLibrary
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
[ 54%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
[ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
[ 55%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/AngleConstraint.cpp
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/MolBundle.cpp
[ 56%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/TorsionConstraint.cpp
[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/StereoGroup.cpp
[ 56%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/PositionConstraint.cpp
[ 56%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/Params.cpp
[ 57%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitSubstructLibrary.2019.03.1dev1.dylib -install_name @rpath/libRDKitSubstructLibrary.1.dylib CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructLibrary.1.dylib ../../../lib/libRDKitSubstructLibrary.dylib
[ 57%] Built target SubstructLibrary
[ 57%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 57%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1
[ 57%] Built target rdchem
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 57%] Built target rdFingerprintGenerator
[ 58%] Linking CXX shared library ../../lib/libRDKitForceField.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitForceField.2019.03.1dev1.dylib -install_name @rpath/libRDKitForceField.1.dylib CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../lib/libRDKitForceField.1.dylib ../../lib/libRDKitForceField.dylib
[ 58%] Built target ForceField
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceFieldHelpers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
[ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
[ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
[ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
[ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
[ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
[ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
[ 59%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib -install_name @rpath/libRDKitForceFieldHelpers.1.dylib CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.1.dylib ../../../lib/libRDKitForceFieldHelpers.dylib
[ 59%] Built target ForceFieldHelpers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeometry
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
[ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/DistGeomUtils.cpp
[ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/TriangleSmooth.cpp
[ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/DistViolationContrib.cpp
[ 60%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/ChiralViolationContrib.cpp
Scanning dependencies of target rdForceField
/Library/Developer/CommandLineTools/usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
Scanning dependencies of target rdForceFieldHelpers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
[ 61%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap/ForceField.cpp
[ 61%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
Scanning dependencies of target MolAlign
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
[ 61%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/AlignMolecules.cpp
[ 61%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
[ 61%] Linking CXX shared library ../../lib/libRDKitDistGeometry.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitDistGeometry.2019.03.1dev1.dylib -install_name @rpath/libRDKitDistGeometry.1.dylib CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.2019.03.1dev1.dylib ../../lib/libRDKitDistGeometry.1.dylib ../../lib/libRDKitDistGeometry.dylib
[ 61%] Built target DistGeometry
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeom
/Library/Developer/CommandLineTools/usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
[ 61%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap/DistGeom.cpp
Scanning dependencies of target DistGeomHelpers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
[ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
[ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Embedder.cpp
[ 62%] Linking CXX shared library ../../../lib/libRDKitMolAlign.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolAlign.1.dylib CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.1.dylib ../../../lib/libRDKitMolAlign.dylib
[ 62%] Built target MolAlign
/Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
[ 62%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 62%] Built target rdForceFieldHelpers
Scanning dependencies of target rdCoordGen
/Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build
Scanning dependencies of target Depictor
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
[ 62%] Building CXX object External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdCoordGen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap/rdCoordGen.cpp
[ 62%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/RDDepictor.cpp
[ 63%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
[ 63%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/EmbeddedFrag.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/DepictUtils.cpp
[ 63%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 63%] Built target rdForceField
[ 64%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitDistGeomHelpers.2019.03.1dev1.dylib -install_name @rpath/libRDKitDistGeomHelpers.1.dylib CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDistGeometry.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitDistGeomHelpers.1.dylib ../../../lib/libRDKitDistGeomHelpers.dylib
[ 64%] Built target DistGeomHelpers
[ 64%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDistGeometry.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 64%] Built target DistGeom
[ 64%] Linking CXX shared library ../../../lib/libRDKitDepictor.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib -install_name @rpath/libRDKitDepictor.1.dylib CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.1.dylib ../../../lib/libRDKitDepictor.dylib
[ 64%] Built target Depictor
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
[ 65%] Linking CXX shared module ../../../rdkit/Chem/rdCoordGen.so
cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdCoordGen.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdCoordGen.so CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
[ 65%] Built target rdCoordGen
Scanning dependencies of target FileParsers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
[ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/Mol2FileParser.cpp
[ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolFileParser.cpp
[ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolSGroupParsing.cpp
[ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o
[ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolFileStereochem.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolSGroupWriting.cpp
[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolFileWriter.cpp
[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SDMolSupplier.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SDWriter.cpp
[ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SmilesWriter.cpp
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/TDTWriter.cpp
[ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/TplFileParser.cpp
[ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/TplFileWriter.cpp
[ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/PDBParser.cpp
[ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/PDBWriter.cpp
[ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/PDBSupplier.cpp
[ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MaeMolSupplier.cpp
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/ProximityBonds.cpp
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SequenceParsers.cpp
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SequenceWriters.cpp
[ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SVGParser.cpp
[ 71%] Linking CXX shared library ../../../lib/libRDKitFileParsers.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib -install_name @rpath/libRDKitFileParsers.1.dylib CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.1.dylib ../../../lib/libRDKitFileParsers.dylib
[ 71%] Built target FileParsers
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
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/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
Scanning dependencies of target MMPA
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
[ 71%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/MMPA.cpp
Scanning dependencies of target rdMolCatalog
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
Scanning dependencies of target FMCS
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
Scanning dependencies of target rdDepictor
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
Scanning dependencies of target rdDistGeom
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
Scanning dependencies of target rdSubstructLibrary
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
[ 72%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
Scanning dependencies of target rdfiltercatalog
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
[ 72%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
[ 72%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
[ 72%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/FMCS.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
[ 72%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
[ 73%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/Seed.cpp
[ 73%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
[ 73%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
Scanning dependencies of target rdfragcatalog
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
[ 73%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
Scanning dependencies of target rdmolfiles
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
[ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/rdmolfiles.cpp
Scanning dependencies of target Descriptors
/Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
[ 73%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Crippen.cpp
[ 73%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
[ 74%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
[ 74%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
[ 74%] Linking CXX shared library ../../../lib/libRDKitMMPA.dylib
cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -W