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March 1, 2019 07:43
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rdkit (rdkit/rdkit/rdkit) on macOS 10.13.6 - Homebrew build logs
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| Homebrew build logs for rdkit/rdkit/rdkit on macOS 10.13.6 | |
| Build date: 2019-03-01 08:38:43 |
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| HOMEBREW_VERSION: 2.0.2-101-g5eb79b5 | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 5eb79b552c50abb0c35fdd8f70e9cccbc391598e | |
| Last commit: 18 hours ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 3f65e145eeead3d53599fc4f60fb86dc5b674a9c | |
| Core tap last commit: 3 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_DEV_CMD_RUN: 1 | |
| HOMEBREW_DISPLAY: /private/tmp/com.apple.launchd.sUFlsjYAcZ/org.macosforge.xquartz:0 | |
| HOMEBREW_LOGS: /Users/tgg/Library/Logs/Homebrew | |
| CPU: dodeca-core 64-bit kabylake | |
| Homebrew Ruby: 2.3.7 => /System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/bin/ruby | |
| Clang: 10.0 build 1000 | |
| Git: 2.17.1 => /Library/Developer/CommandLineTools/usr/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Java: 1.8.0_131, 1.8.0_45, 1.7.0_79 | |
| macOS: 10.13.6-x86_64 | |
| CLT: 10.0.0.0.1.1535735448 | |
| Xcode: 10.1 | |
| XQuartz: 2.7.11 => /opt/X11 |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry or file an issue; just ignore this. Thanks! | |
| Warning: "config" scripts exist outside your system or Homebrew directories. | |
| `./configure` scripts often look for *-config scripts to determine if | |
| software packages are installed, and what additional flags to use when | |
| compiling and linking. | |
| Having additional scripts in your path can confuse software installed via | |
| Homebrew if the config script overrides a system or Homebrew provided | |
| script of the same name. We found the following "config" scripts: | |
| /anaconda3/bin/icu-config | |
| /anaconda3/bin/krb5-config | |
| /anaconda3/bin/freetype-config | |
| /anaconda3/bin/xslt-config | |
| /anaconda3/bin/libpng16-config | |
| /anaconda3/bin/python3.7-config | |
| /anaconda3/bin/libpng-config | |
| /anaconda3/bin/xml2-config | |
| /anaconda3/bin/python3.7m-config | |
| /anaconda3/bin/python3-config | |
| /anaconda3/bin/curl-config | |
| /anaconda3/bin/ncursesw6-config | |
| /anaconda3/bin/pcre-config | |
| /Users/tgg/Github/emsdk/emscripten/1.38.18/em-config | |
| /Users/tgg/Github/emsdk/clang/e1.38.18_64bit/llvm-config |
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| rdkit/rdkit/rdkit --with-python3 |
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| Formula: rdkit | |
| Tap: rdkit/rdkit | |
| Path: /usr/local/Homebrew/Library/Taps/rdkit/homebrew-rdkit/Formula/rdkit.rb |
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| 2019-03-01 08:33:45 +0100 | |
| cmake | |
| -DCMAKE_C_FLAGS_RELEASE=-DNDEBUG | |
| -DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG | |
| -DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/rdkit/HEAD-fa61fa7 | |
| -DCMAKE_BUILD_TYPE=Release | |
| -DCMAKE_FIND_FRAMEWORK=LAST | |
| -DCMAKE_VERBOSE_MAKEFILE=ON | |
| -Wno-dev | |
| -DRDK_INSTALL_INTREE=OFF | |
| -DRDK_BUILD_CPP_TESTS=OFF | |
| -DRDK_INSTALL_STATIC_LIBS=OFF | |
| -DPYTHON_EXECUTABLE='/usr/local/opt/python/bin/python3' | |
| -DPYTHON_INCLUDE_DIR='/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m' | |
| -DPYTHON_NUMPY_INCLUDE_PATH='/usr/local/lib/python3.7/site-packages/numpy/core/include' | |
| . | |
| -- The C compiler identification is AppleClang 10.0.0.10001044 | |
| -- The CXX compiler identification is AppleClang 10.0.0.10001044 | |
| -- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang | |
| -- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -- works | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ | |
| -- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -- works | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- Check if the system is big endian | |
| -- Searching 16 bit integer | |
| -- Looking for sys/types.h | |
| -- Looking for sys/types.h - found | |
| -- Looking for stdint.h | |
| -- Looking for stdint.h - found | |
| -- Looking for stddef.h | |
| -- Looking for stddef.h - found | |
| -- Check size of unsigned short | |
| -- Check size of unsigned short - done | |
| -- Using unsigned short | |
| -- Check if the system is big endian - little endian | |
| Downloading https://github.com/catchorg/Catch2/archive/v2.1.2.tar.gz... | |
| CATCH: /tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include | |
| -- Found PythonInterp: /usr/local/opt/python/bin/python3 (found version "3.7.2") | |
| -- Found PythonLibs: /usr/local/Frameworks/Python.framework/Versions/3.7/lib/libpython3.7m.dylib (found version "3.7.2") | |
| CMake Warning at /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/FindBoost.cmake:1775 (message): | |
| No header defined for python-py37; skipping header check | |
| Call Stack (most recent call first): | |
| CMakeLists.txt:237 (find_package) | |
| Python Install directory /usr/local/Cellar/rdkit/HEAD-fa61fa7/lib/python3.7/site-packages | |
| PYTHON Py_ENABLE_SHARED: 0 | |
| PYTHON USING LINK LINE: -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk | |
| -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") | |
| -- Looking for pthread.h | |
| -- Looking for pthread.h - found | |
| -- Looking for pthread_create | |
| -- Looking for pthread_create - found | |
| -- Found Threads: TRUE | |
| -- Boost version: 1.68.0 | |
| -- Found the following Boost libraries: | |
| -- serialization | |
| == Using strict rotor definition | |
| -- maeparser include dir set as 'maeparser_INCLUDE_DIRS-NOTFOUND' | |
| -- maeparser libraries set as 'maeparser_LIBRARIES-NOTFOUND' | |
| -- Could NOT find maeparser (missing: maeparser_INCLUDE_DIRS maeparser_LIBRARIES) | |
| Downloading https://github.com/schrodinger/maeparser/archive/v1.0.1.tar.gz... | |
| -- coordgen include dir set as coordgen_INCLUDE_DIRS-NOTFOUND | |
| -- coordgen libraries set as 'coordgen_LIBRARIES-NOTFOUND' | |
| -- coordgen templates file set as 'coordgen_TEMPLATE_FILE-NOTFOUND' | |
| -- Could NOT find coordgen (missing: coordgen_INCLUDE_DIRS coordgen_LIBRARIES coordgen_TEMPLATE_FILE) | |
| Downloading https://github.com/schrodinger/coordgenlibs/archive/v1.2.tar.gz... | |
| == Updating Filters.cpp from pains file | |
| == Done updating pains files | |
| Downloading https://github.com/Tencent/rapidjson/archive/v1.1.0.tar.gz... | |
| -- Configuring done | |
| -- Generating done | |
| -- Build files have been written to: /tmp/rdkit-20190301-1994-10cstk |
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| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format CMakeCCompilerId.c | |
| superenv added: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -Wno-parentheses -Wno-logical-op-parentheses -Wno-format CMakeCCompilerId.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format CMakeCXXCompilerId.cpp | |
| superenv added: -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format CMakeCXXCompilerId.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_d57fc.dir/testCCompiler.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/testCCompiler.c | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_d57fc.dir/testCCompiler.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/testCCompiler.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d57fc.dir/testCCompiler.c.o -o cmTC_d57fc | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d57fc.dir/testCCompiler.c.o -o cmTC_d57fc -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_ec337.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/CMakeCCompilerABI.c | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_ec337.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/CMakeCCompilerABI.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_ec337.dir/CMakeCCompilerABI.c.o -o cmTC_ec337 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_ec337.dir/CMakeCCompilerABI.c.o -o cmTC_ec337 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c11 -o CMakeFiles/cmTC_7bb9e.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c11 -o CMakeFiles/cmTC_7bb9e.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_7bb9e.dir/feature_tests.c.o -o cmTC_7bb9e | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_7bb9e.dir/feature_tests.c.o -o cmTC_7bb9e -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c99 -o CMakeFiles/cmTC_d696a.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c99 -o CMakeFiles/cmTC_d696a.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d696a.dir/feature_tests.c.o -o cmTC_d696a | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d696a.dir/feature_tests.c.o -o cmTC_d696a -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c90 -o CMakeFiles/cmTC_9adaa.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c90 -o CMakeFiles/cmTC_9adaa.dir/feature_tests.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_9adaa.dir/feature_tests.c.o -o cmTC_9adaa | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_9adaa.dir/feature_tests.c.o -o cmTC_9adaa -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_29179.dir/testCXXCompiler.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/testCXXCompiler.cxx | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_29179.dir/testCXXCompiler.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/testCXXCompiler.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_29179.dir/testCXXCompiler.cxx.o -o cmTC_29179 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_29179.dir/testCXXCompiler.cxx.o -o cmTC_29179 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_7ccea.dir/CMakeCXXCompilerABI.cpp.o -c /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/CMakeCXXCompilerABI.cpp | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_7ccea.dir/CMakeCXXCompilerABI.cpp.o -c /usr/local/Cellar/cmake/3.13.4/share/cmake/Modules/CMakeCXXCompilerABI.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_7ccea.dir/CMakeCXXCompilerABI.cpp.o -o cmTC_7ccea | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_7ccea.dir/CMakeCXXCompilerABI.cpp.o -o cmTC_7ccea -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++1z -o CMakeFiles/cmTC_8fdd7.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++1z -o CMakeFiles/cmTC_8fdd7.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_8fdd7.dir/feature_tests.cxx.o -o cmTC_8fdd7 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_8fdd7.dir/feature_tests.cxx.o -o cmTC_8fdd7 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++14 -o CMakeFiles/cmTC_e911c.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++14 -o CMakeFiles/cmTC_e911c.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_e911c.dir/feature_tests.cxx.o -o cmTC_e911c | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_e911c.dir/feature_tests.cxx.o -o cmTC_e911c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++11 -o CMakeFiles/cmTC_adf11.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++11 -o CMakeFiles/cmTC_adf11.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_adf11.dir/feature_tests.cxx.o -o cmTC_adf11 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_adf11.dir/feature_tests.cxx.o -o cmTC_adf11 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++98 -o CMakeFiles/cmTC_1c499.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -std=c++98 -o CMakeFiles/cmTC_1c499.dir/feature_tests.cxx.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/feature_tests.cxx -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1c499.dir/feature_tests.cxx.o -o cmTC_1c499 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1c499.dir/feature_tests.cxx.o -o cmTC_1c499 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_de5e1.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckIncludeFile.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_de5e1.dir/CheckIncludeFile.c.o -o cmTC_de5e1 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_de5e1.dir/CheckIncludeFile.c.o -o cmTC_de5e1 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_d11f8.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckIncludeFile.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d11f8.dir/CheckIncludeFile.c.o -o cmTC_d11f8 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_d11f8.dir/CheckIncludeFile.c.o -o cmTC_d11f8 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_65132.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckIncludeFile.c | |
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| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_65132.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckIncludeFile.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_65132.dir/CheckIncludeFile.c.o -o cmTC_65132 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_65132.dir/CheckIncludeFile.c.o -o cmTC_65132 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_f5dd5.dir/CMAKE_SIZEOF_UNSIGNED_SHORT.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CheckTypeSize/CMAKE_SIZEOF_UNSIGNED_SHORT.c | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_f5dd5.dir/CMAKE_SIZEOF_UNSIGNED_SHORT.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CheckTypeSize/CMAKE_SIZEOF_UNSIGNED_SHORT.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_f5dd5.dir/CMAKE_SIZEOF_UNSIGNED_SHORT.c.o -o cmTC_f5dd5 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_f5dd5.dir/CMAKE_SIZEOF_UNSIGNED_SHORT.c.o -o cmTC_f5dd5 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_2c451.dir/TestEndianess.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/TestEndianess.c | |
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| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_2c451.dir/TestEndianess.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/TestEndianess.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_2c451.dir/TestEndianess.c.o -o cmTC_2c451 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_2c451.dir/TestEndianess.c.o -o cmTC_2c451 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_78e75.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckIncludeFile.c | |
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| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_78e75.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckIncludeFile.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_78e75.dir/CheckIncludeFile.c.o -o cmTC_78e75 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_78e75.dir/CheckIncludeFile.c.o -o cmTC_78e75 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_1ae71.dir/CheckSymbolExists.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckSymbolExists.c | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -o CMakeFiles/cmTC_1ae71.dir/CheckSymbolExists.c.o -c /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/CMakeTmp/CheckSymbolExists.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1ae71.dir/CheckSymbolExists.c.o -o cmTC_1ae71 | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_1ae71.dir/CheckSymbolExists.c.o -o cmTC_1ae71 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| 2019-03-01 08:34:01 +0100 | |
| make | |
| -j12 | |
| /usr/local/Cellar/cmake/3.13.4/bin/cmake -S/tmp/rdkit-20190301-1994-10cstk -B/tmp/rdkit-20190301-1994-10cstk --check-build-system CMakeFiles/Makefile.cmake 0 | |
| /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_progress_start /tmp/rdkit-20190301-1994-10cstk/CMakeFiles /tmp/rdkit-20190301-1994-10cstk/CMakeFiles/progress.marks | |
| /Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 all | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/catch /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/catch /tmp/rdkit-20190301-1994-10cstk/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target catch | |
| Scanning dependencies of target inchi_support | |
| Scanning dependencies of target coordgen_support | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build | |
| make[2]: Nothing to be done for `External/CoordGen/CMakeFiles/coordgen_support.dir/build'. | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E copy /tmp/rdkit-20190301-1994-10cstk/External/INCHI-API/python/noinchi.py /tmp/rdkit-20190301-1994-10cstk/rdkit/Chem/inchi.py | |
| make[2]: Nothing to be done for `External/catch/CMakeFiles/catch.dir/build'. | |
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| /Library/Developer/CommandLineTools/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/CMakeFiles/maeparser.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= | |
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| Scanning dependencies of target hc | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build | |
| [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o | |
| [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/hc.c | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/hcdriver.c | |
| [ 1%] Linking C shared library ../../../../lib/libRDKithc.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../../lib/libRDKithc.2019.03.1dev1.dylib -install_name @rpath/libRDKithc.1.dylib CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.2019.03.1dev1.dylib ../../../../lib/libRDKithc.1.dylib ../../../../lib/libRDKithc.dylib | |
| [ 1%] Built target hc | |
| Scanning dependencies of target RDGeneral | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build | |
| [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/Invariant.cpp | |
| [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/types.cpp | |
| [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/utils.cpp | |
| [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/RDLog.cpp | |
| [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o | |
| [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o | |
| [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/LocaleSwitcher.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/versions.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/Dict.cpp | |
| Scanning dependencies of target maeparser | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/maeparser.dir/build.make External/CoordGen/CMakeFiles/maeparser.dir/build | |
| [ 3%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o | |
| [ 3%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/MaeBlock.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/Buffer.cpp | |
| [ 4%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o | |
| [ 4%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/Reader.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/MaeParser.cpp | |
| [ 4%] Linking CXX shared library ../../lib/libRDKitRDGeneral.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDGeneral.1.dylib CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.1.dylib ../../lib/libRDKitRDGeneral.dylib | |
| [ 4%] Built target RDGeneral | |
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| /Library/Developer/CommandLineTools/usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target EigenSolvers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build | |
| [ 4%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp | |
| Scanning dependencies of target SimDivPickers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build | |
| [ 4%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/DistPicker.cpp | |
| [ 4%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/MaxMinPicker.cpp | |
| [ 5%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/HierarchicalClusterPicker.cpp | |
| Scanning dependencies of target DataStructs | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build | |
| [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/Bi[ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o | |
| tVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/BitVect.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/SparseBitVect.cpp | |
| [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o | |
| [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Utils.cpp | |
| [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/ExplicitBitVect.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/base64.cpp | |
| Scanning dependencies of target Catalogs | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build | |
| Scanning dependencies of target RDBoost | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build | |
| [ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/Catalog.cpp | |
| [ 6%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap.cpp | |
| [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/BitOps.cpp | |
| [ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CatalogParams.cpp | |
| [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/DiscreteDistMat.cpp | |
| [ 7%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CatalogEntry.cpp | |
| [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/DiscreteValueVect.cpp | |
| [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/FPBReader.cpp | |
| [ 8%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitSimDivPickers.2019.03.1dev1.dylib -install_name @rpath/libRDKitSimDivPickers.1.dylib CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKithc.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.2019.03.1dev1.dylib ../../lib/libRDKitSimDivPickers.1.dylib ../../lib/libRDKitSimDivPickers.dylib | |
| [ 8%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 | |
| [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/MultiFPBReader.cpp | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib -install_name @rpath/libRDKitEigenSolvers.1.dylib CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 8%] Built target SimDivPickers | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.1.dylib ../../../lib/libRDKitEigenSolvers.dylib | |
| [ 8%] Built target EigenSolvers | |
| [ 8%] Linking CXX shared library ../../lib/libRDKitCatalogs.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitCatalogs.2019.03.1dev1.dylib -install_name @rpath/libRDKitCatalogs.1.dylib CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../lib/libRDKitCatalogs.1.dylib ../../lib/libRDKitCatalogs.dylib | |
| [ 8%] Built target Catalogs | |
| [ 8%] Linking CXX shared library ../../lib/libRDKitRDBoost.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDBoost.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDBoost.1.dylib CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.2019.03.1dev1.dylib ../../lib/libRDKitRDBoost.1.dylib ../../lib/libRDKitRDBoost.dylib | |
| [ 8%] Built target RDBoost | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= | |
| [ 8%] Linking CXX shared library ../../lib/libRDKitmaeparser.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/maeparser.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitmaeparser.2019.03.1dev1.dylib -install_name @rpath/libRDKitmaeparser.1.dylib CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../lib/libRDKitmaeparser.1.dylib ../../lib/libRDKitmaeparser.dylib | |
| [ 8%] Built target maeparser | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/coordgen.dir/build.make External/CoordGen/CMakeFiles/coordgen.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/CMakeFiles/coordgen.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target coordgen | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/CMakeFiles/coordgen.dir/build.make External/CoordGen/CMakeFiles/coordgen.dir/build | |
| [ 8%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/CoordgenFragmentBuilder.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmentBuilder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenFragmentBuilder.cpp | |
| [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/CoordgenFragmenter.cpp.o | |
| [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/CoordgenMinimizer.cpp.o | |
| [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/CoordgenMacrocycleBuilder.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenMinimizer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenMinimizer.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenMacrocycleBuilder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenMacrocycleBuilder.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmenter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenFragmenter.cpp | |
| [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizer.cpp.o | |
| [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerAtom.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerAtom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerAtom.cpp | |
| [ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerBond.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizer.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerBond.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerBond.cpp | |
| [ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerFragment.cpp.o | |
| [ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMarchingSquares.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerFragment.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerFragment.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMarchingSquares.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerMarchingSquares.cpp | |
| [ 10%] Linking CXX shared library ../../lib/libRDKitDataStructs.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib -install_name @rpath/libRDKitDataStructs.1.dylib CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.1.dylib ../../lib/libRDKitDataStructs.dylib | |
| [ 10%] Built target DataStructs | |
| [ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMolecule.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMolecule.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerMolecule.cpp | |
| Scanning dependencies of target Clustering | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build | |
| Scanning dependencies of target rdBase | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build | |
| [ 11%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/Clustering.cpp | |
| [ 12%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap/RDBase.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Geometry /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Geometry /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target RDGeometryLib | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build | |
| [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/point.cpp | |
| Scanning dependencies of target InfoTheory | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build | |
| Scanning dependencies of target rdMetricMatrixCalc | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build | |
| [ 12%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/InfoBitRanker.cpp | |
| [ 13%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp | |
| Scanning dependencies of target rdSimDivPickers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build | |
| [ 14%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap/MaxMinPicker.cpp | |
| Scanning dependencies of target cDataStructs | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build | |
| [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/DataStructs.cpp | |
| [ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Transform2D.cpp | |
| [ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp | |
| [ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Transform3D.cpp | |
| [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/DiscreteValueVect.cpp | |
| [ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp | |
| [ 16%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitInfoTheory.2019.03.1dev1.dylib -install_name @rpath/libRDKitInfoTheory.1.dylib CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 16%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKithc.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.2019.03.1dev1.dylib ../../../lib/libRDKitInfoTheory.1.dylib ../../../lib/libRDKitInfoTheory.dylib | |
| [ 16%] Built target InfoTheory | |
| [ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/SparseIntVect.cpp | |
| [ 16%] Built target Clustering | |
| [ 17%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidue.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidue.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerResidue.cpp | |
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| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= | |
| [ 17%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/UniformGrid3D.cpp | |
| [ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_SparseBV.cpp | |
| Scanning dependencies of target rdInfoTheory | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build | |
| [ 18%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidueInteraction.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidueInteraction.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerResidueInteraction.cpp | |
| [ 18%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp | |
| [ 18%] Building CXX object External/CoordGen/CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerRing.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerRing.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/sketcherMinimizerRing.cpp | |
| [ 18%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 18%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/GridUtils.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= | |
| [ 18%] Built target rdMetricMatrixCalc | |
| [ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp | |
| [ 19%] Linking CXX shared library ../../lib/libRDKitcoordgen.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/coordgen.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitcoordgen.2019.03.1dev1.dylib -install_name @rpath/libRDKitcoordgen.1.dylib CMakeFiles/coordgen.dir/coordgen/CoordgenFragmentBuilder.cpp.o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmenter.cpp.o CMakeFiles/coordgen.dir/coordgen/CoordgenMacrocycleBuilder.cpp.o CMakeFiles/coordgen.dir/coordgen/CoordgenMinimizer.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizer.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerAtom.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerBond.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerFragment.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgen.dir/coordgen/sketcherMinimizerRing.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitmaeparser.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../lib/libRDKitcoordgen.1.dylib ../../lib/libRDKitcoordgen.dylib | |
| [ 19%] Built target coordgen | |
| [ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp | |
| [ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp | |
| [ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_BitOps.cpp | |
| [ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_FPB.cpp | |
| [ 19%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSimDivPickers.2019.03.1dev1.dylib ../../../lib/libRDKithc.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| Scanning dependencies of target cQuantize | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build | |
| [ 19%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data/cQuantize.cpp | |
| [ 19%] Built target rdSimDivPickers | |
| [ 19%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap/wrap_Utils.cpp | |
| [ 20%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDGeometryLib.1.dylib CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitRDGeometryLib.1.dylib ../../lib/libRDKitRDGeometryLib.dylib | |
| [ 20%] Built target RDGeometryLib | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= | |
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| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= | |
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| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target Alignment | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build | |
| [ 20%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DAlignment_EXPORTS -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/AlignPoints.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= | |
| [ 20%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/InfoTheory/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitInfoTheory.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
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| [ 20%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ML/Data && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitInfoTheory.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 20%] Built target cQuantize | |
| Scanning dependencies of target GraphMol | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build | |
| Scanning dependencies of target ChemicalFeatures | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build | |
| Scanning dependencies of target rdGeometry | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build | |
| [ 20%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/FreeChemicalFeature.cpp | |
| [ 20%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap/Point.cpp | |
| [ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap/UniformGrid3D.cpp | |
| [ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap/rdGeometry.cpp | |
| [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Atom.cpp | |
| [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/QueryAtom.cpp | |
| [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/QueryBond.cpp | |
| [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Bond.cpp | |
| [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolOps.cpp | |
| [ 22%] Linking CXX shared library ../../../lib/libRDKitAlignment.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib -install_name @rpath/libRDKitAlignment.1.dylib CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.1.dylib ../../../lib/libRDKitAlignment.dylib | |
| [ 22%] Built target Alignment | |
| [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FindRings.cpp | |
| [ 24%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 24%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitChemicalFeatures.2019.03.1dev1.dylib -install_name @rpath/libRDKitChemicalFeatures.1.dylib CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 24%] Linking CXX shared module ../../../rdkit/rdBase.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.2019.03.1dev1.dylib ../../lib/libRDKitChemicalFeatures.1.dylib ../../lib/libRDKitChemicalFeatures.dylib | |
| [ 24%] Built target ChemicalFeatures | |
| [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ROMol.cpp | |
| [ 24%] Built target cDataStructs | |
| [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RWMol.cpp | |
| [ 24%] Built target rdBase | |
| [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PeriodicTable.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= | |
| [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/atomic_data.cpp | |
| [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/QueryOps.cpp | |
| [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolPickler.cpp | |
| [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Canon.cpp | |
| Scanning dependencies of target rdAlignment | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build | |
| [ 25%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap/rdAlignment.cpp | |
| [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/AtomIterators.cpp | |
| [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/BondIterators.cpp | |
| [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Aromaticity.cpp | |
| [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Kekulize.cpp | |
| [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDiscriminators.cpp | |
| [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ConjugHybrid.cpp | |
| [ 27%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Geometry/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 27%] Built target rdGeometry | |
| [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/AddHs.cpp | |
| [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Matrices.cpp | |
| [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Chirality.cpp | |
| [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RingInfo.cpp | |
| [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Conformer.cpp | |
| [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Renumber.cpp | |
| [ 28%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Alignment/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 28%] Built target rdAlignment | |
| [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/AdjustQuery.cpp | |
| [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Resonance.cpp | |
| [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StereoGroup.cpp | |
| [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/new_canon.cpp | |
| [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Sgroup.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/GraphMol.dir/Sgroup.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Sgroup.cpp | |
| [ 29%] Linking CXX shared library ../../lib/libRDKitGraphMol.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitGraphMol.2019.03.1dev1.dylib -install_name @rpath/libRDKitGraphMol.1.dylib CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/Sgroup.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../lib/libRDKitGraphMol.1.dylib ../../lib/libRDKitGraphMol.dylib | |
| [ 29%] Built target GraphMol | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend | |
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| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend | |
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| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend | |
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| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target Trajectory | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build | |
| Scanning dependencies of target MolCatalog | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build | |
| [ 30%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory/Trajectory.cpp | |
| [ 30%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp | |
| [ 30%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/MolCatalogParams.cpp | |
| Scanning dependencies of target Subgraphs | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build | |
| Scanning dependencies of target MolInterchange | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build | |
| Scanning dependencies of target SubstructMatch | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build | |
| Scanning dependencies of target PartialCharges | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build | |
| [ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs/Subgraphs.cpp | |
| [ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs/SubgraphUtils.cpp | |
| [ 30%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/rapidjson-1.1.0/include -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Parser.cpp | |
| Scanning dependencies of target MolTransforms | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build | |
| [ 30%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct/SubstructMatch.cpp | |
| [ 31%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/GasteigerCharges.cpp | |
| [ 31%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/MolTransforms.cpp | |
| Scanning dependencies of target rdChemicalFeatures | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build | |
| Scanning dependencies of target rdqueries | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build | |
| [ 31%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp | |
| [ 31%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/rdqueries.cpp | |
| Scanning dependencies of target SmilesParse | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build | |
| [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/SmilesParse.cpp | |
| [ 31%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct/SubstructUtils.cpp | |
| [ 31%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 | |
| [ 31%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/GasteigerParams.cpp | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolCatalog.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolCatalog.1.dylib CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitMolCatalog.1.dylib ../../../lib/libRDKitMolCatalog.dylib | |
| [ 31%] Built target MolCatalog | |
| [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/SmilesParseOps.cpp | |
| [ 31%] Linking CXX shared library ../../../lib/libRDKitTrajectory.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 | |
| [ 31%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib -install_name @rpath/libRDKitTrajectory.1.dylib CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 31%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib -install_name @rpath/libRDKitSubgraphs.1.dylib CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Trajectory && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.1.dylib ../../../lib/libRDKitTrajectory.dylib | |
| [ 31%] Built target Trajectory | |
| [ 32%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/rapidjson-1.1.0/include -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Writer.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Subgraphs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.1.dylib ../../../lib/libRDKitSubgraphs.dylib | |
| [ 32%] Built target Subgraphs | |
| [ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/SmilesWrite.cpp | |
| [ 34%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Queries.cpp | |
| [ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/SmartsWrite.cpp | |
| [ 34%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib -install_name @rpath/libRDKitSubstructMatch.1.dylib CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Substruct && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.1.dylib ../../../lib/libRDKitSubstructMatch.dylib | |
| [ 34%] Built target SubstructMatch | |
| [ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/CXSmilesOps.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= | |
| [ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/smarts.tab.cpp | |
| [ 35%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolTransforms.1.dylib CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.1.dylib ../../../lib/libRDKitMolTransforms.dylib | |
| [ 35%] Built target MolTransforms | |
| [ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/smiles.tab.cpp | |
| Scanning dependencies of target Optimizer | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build | |
| [ 35%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer/BFGSOpt.cpp | |
| [ 35%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib -install_name @rpath/libRDKitPartialCharges.1.dylib CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| Scanning dependencies of target rdtrajectory | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build | |
| [ 35%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Trajectory.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../lib/libRDKitPartialCharges.1.dylib ../../../lib/libRDKitPartialCharges.dylib | |
| [ 35%] Built target PartialCharges | |
| [ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/lex.yysmarts.cpp | |
| [ 36%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer/LinearSearch.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= | |
| [ 36%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/rdTrajectory.cpp | |
| [ 36%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolInterchange.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolInterchange.1.dylib CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.2019.03.1dev1.dylib ../../../lib/libRDKitMolInterchange.1.dylib ../../../lib/libRDKitMolInterchange.dylib | |
| [ 36%] Built target MolInterchange | |
| [ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse/lex.yysmiles.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= | |
| [ 36%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ChemicalFeatures/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitChemicalFeatures.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 36%] Built target rdChemicalFeatures | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdMolTransforms | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build | |
| [ 36%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp | |
| [ 36%] Linking CXX shared library ../../../lib/libRDKitOptimizer.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib -install_name @rpath/libRDKitOptimizer.1.dylib CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| Scanning dependencies of target ShapeHelpers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.1.dylib ../../../lib/libRDKitOptimizer.dylib | |
| [ 36%] Built target Optimizer | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ForceField /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ForceField /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= | |
| [ 37%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp | |
| [ 37%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp | |
| Scanning dependencies of target rdMolInterchange | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build | |
| [ 37%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolInterchange_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/rapidjson-1.1.0/include -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp | |
| Scanning dependencies of target rdPartialCharges | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build | |
| [ 37%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp | |
| [ 37%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 37%] Built target rdqueries | |
| [ 37%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib -install_name @rpath/libRDKitSmilesParse.1.dylib CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| Scanning dependencies of target ForceField | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.1.dylib ../../../lib/libRDKitSmilesParse.dylib | |
| [ 37%] Built target SmilesParse | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend | |
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| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= | |
| [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/ForceField.cpp | |
| [ 39%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 39%] Built target rdtrajectory | |
| [ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/AngleBend.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ChemTransforms | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build | |
| Scanning dependencies of target MolChemicalFeatures | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build | |
| [ 40%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms/ChemTransforms.cpp | |
| Scanning dependencies of target FilterCatalog | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build | |
| [ 41%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp | |
| Scanning dependencies of target FragCatalog | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build | |
| [ 41%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Filters.cpp | |
| [ 41%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp | |
| Scanning dependencies of target Fingerprints | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build | |
| [ 41%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Fingerprints.cpp | |
| [ 41%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitShapeHelpers.2019.03.1dev1.dylib -install_name @rpath/libRDKitShapeHelpers.1.dylib CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| Scanning dependencies of target ReducedGraphs | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitShapeHelpers.1.dylib ../../../lib/libRDKitShapeHelpers.dylib | |
| [ 41%] Built target ShapeHelpers | |
| [ 41%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/BondStretch.cpp | |
| [ 41%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp | |
| [ 41%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms/MolFragmenter.cpp | |
| [ 41%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragCatGenerator.cpp | |
| [ 42%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolInterchange/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolInterchange.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 42%] Built target rdMolInterchange | |
| [ 42%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/FilterCatalog.cpp | |
| [ 42%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/PartialCharges/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 42%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/Nonbonded.cpp | |
| [ 42%] Built target rdPartialCharges | |
| [ 42%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/PatternFingerprints.cpp | |
| [ 42%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp | |
| [ 43%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp | |
| [ 44%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolTransforms/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 44%] Built target rdMolTransforms | |
| [ 45%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/Inversion.cpp | |
| [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/MorganFingerprints.cpp | |
| [ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp | |
| [ 46%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitReducedGraphs.2019.03.1dev1.dylib -install_name @rpath/libRDKitReducedGraphs.1.dylib CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.2019.03.1dev1.dylib ../../../lib/libRDKitReducedGraphs.1.dylib ../../../lib/libRDKitReducedGraphs.dylib | |
| [ 46%] Built target ReducedGraphs | |
| [ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragCatParams.cpp | |
| [ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp | |
| [ 46%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/TorsionAngle.cpp | |
| [ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/FilterMatchers.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= | |
| [ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/FragFPGenerator.cpp | |
| Scanning dependencies of target rdShapeHelpers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build | |
| [ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp | |
| [ 47%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib -install_name @rpath/libRDKitChemTransforms.1.dylib CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 47%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemTransforms && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitChemTransforms.1.dylib ../../../lib/libRDKitChemTransforms.dylib | |
| [ 47%] Built target ChemTransforms | |
| [ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/AtomPairs.cpp | |
| [ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/DistanceConstraint.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= | |
| [ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/MACCS.cpp | |
| [ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/AngleConstraint.cpp | |
| Scanning dependencies of target rdReducedGraphs | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build | |
| [ 48%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp | |
| [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp | |
| [ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/TorsionConstraint.cpp | |
| [ 48%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolChemicalFeatures.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolChemicalFeatures.1.dylib CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.2019.03.1dev1.dylib ../../../lib/libRDKitMolChemicalFeatures.1.dylib ../../../lib/libRDKitMolChemicalFeatures.dylib | |
| [ 48%] Built target MolChemicalFeatures | |
| [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp | |
| [ 48%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitFragCatalog.2019.03.1dev1.dylib -install_name @rpath/libRDKitFragCatalog.1.dylib CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitFragCatalog.1.dylib ../../../lib/libRDKitFragCatalog.dylib | |
| [ 48%] Built target FragCatalog | |
| [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/PositionConstraint.cpp | |
| [ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/MorganGenerator.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= | |
| [ 50%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 | |
| [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/UFF/Params.cpp | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib -install_name @rpath/libRDKitFilterCatalog.1.dylib CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitFilterCatalog.1.dylib ../../../lib/libRDKitFilterCatalog.dylib | |
| [ 50%] Built target FilterCatalog | |
| [ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp | |
| Scanning dependencies of target rdchem | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build | |
| [ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/FingerprintUtil.cpp | |
| [ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/rdchem.cpp | |
| Scanning dependencies of target rdMolChemicalFeatures | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build | |
| [ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp | |
| [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/AngleBend.cpp | |
| [ 51%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 | |
| [ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitShapeHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp | |
| [ 51%] Built target rdShapeHelpers | |
| [ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Table.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Table.cpp | |
| [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/BondStretch.cpp | |
| [ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp | |
| [ 51%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Atom.cpp | |
| [ 51%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitReducedGraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 51%] Built target rdReducedGraphs | |
| [ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp | |
| [ 52%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Bond.cpp | |
| [ 53%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/StretchBend.cpp | |
| [ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Mol.cpp | |
| [ 53%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp | |
| [ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/Conformer.cpp | |
| [ 54%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/OopBend.cpp | |
| [ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/RingInfo.cpp | |
| [ 54%] Linking CXX shared library ../../../lib/libRDKitFingerprints.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib -install_name @rpath/libRDKitFingerprints.1.dylib CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../lib/libRDKitFingerprints.1.dylib ../../../lib/libRDKitFingerprints.dylib | |
| [ 54%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/TorsionAngle.cpp | |
| [ 54%] Built target Fingerprints | |
| [ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/EditableMol.cpp | |
| [ 54%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/Nonbonded.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= | |
| [ 54%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/DistanceConstraint.cpp | |
| [ 54%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolChemicalFeatures.2019.03.1dev1.dylib ../../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 54%] Built target rdMolChemicalFeatures | |
| [ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/MonomerInfo.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdFingerprintGenerator | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build | |
| [ 54%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp | |
| Scanning dependencies of target SubstructLibrary | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build | |
| [ 54%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp | |
| [ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp | |
| [ 55%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/AngleConstraint.cpp | |
| [ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/MolBundle.cpp | |
| [ 56%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/TorsionConstraint.cpp | |
| [ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/StereoGroup.cpp | |
| [ 56%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/PositionConstraint.cpp | |
| [ 56%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/MMFF/Params.cpp | |
| [ 57%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitSubstructLibrary.2019.03.1dev1.dylib -install_name @rpath/libRDKitSubstructLibrary.1.dylib CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructLibrary.1.dylib ../../../lib/libRDKitSubstructLibrary.dylib | |
| [ 57%] Built target SubstructLibrary | |
| [ 57%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 57%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Fingerprints/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 | |
| [ 57%] Built target rdchem | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 57%] Built target rdFingerprintGenerator | |
| [ 58%] Linking CXX shared library ../../lib/libRDKitForceField.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitForceField.2019.03.1dev1.dylib -install_name @rpath/libRDKitForceField.1.dylib CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../lib/libRDKitForceField.1.dylib ../../lib/libRDKitForceField.dylib | |
| [ 58%] Built target ForceField | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ForceFieldHelpers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build | |
| [ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o | |
| [ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp | |
| [ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp | |
| [ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp | |
| [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp | |
| [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp | |
| [ 59%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib -install_name @rpath/libRDKitForceFieldHelpers.1.dylib CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.1.dylib ../../../lib/libRDKitForceFieldHelpers.dylib | |
| [ 59%] Built target ForceFieldHelpers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target DistGeometry | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build | |
| [ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/DistGeomUtils.cpp | |
| [ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/TriangleSmooth.cpp | |
| [ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/DistViolationContrib.cpp | |
| [ 60%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/ChiralViolationContrib.cpp | |
| Scanning dependencies of target rdForceField | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build | |
| Scanning dependencies of target rdForceFieldHelpers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build | |
| [ 61%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap/ForceField.cpp | |
| [ 61%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp | |
| Scanning dependencies of target MolAlign | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build | |
| [ 61%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/AlignMolecules.cpp | |
| [ 61%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp | |
| [ 61%] Linking CXX shared library ../../lib/libRDKitDistGeometry.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitDistGeometry.2019.03.1dev1.dylib -install_name @rpath/libRDKitDistGeometry.1.dylib CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.2019.03.1dev1.dylib ../../lib/libRDKitDistGeometry.1.dylib ../../lib/libRDKitDistGeometry.dylib | |
| [ 61%] Built target DistGeometry | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target DistGeom | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build | |
| [ 61%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap/DistGeom.cpp | |
| Scanning dependencies of target DistGeomHelpers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build | |
| [ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp | |
| [ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Embedder.cpp | |
| [ 62%] Linking CXX shared library ../../../lib/libRDKitMolAlign.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolAlign.1.dylib CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.1.dylib ../../../lib/libRDKitMolAlign.dylib | |
| [ 62%] Built target MolAlign | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= | |
| [ 62%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 62%] Built target rdForceFieldHelpers | |
| Scanning dependencies of target rdCoordGen | |
| /Library/Developer/CommandLineTools/usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build | |
| Scanning dependencies of target Depictor | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build | |
| [ 62%] Building CXX object External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdCoordGen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap/rdCoordGen.cpp | |
| [ 62%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/RDDepictor.cpp | |
| [ 63%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o | |
| [ 63%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/EmbeddedFrag.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/DepictUtils.cpp | |
| [ 63%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/ForceField/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 63%] Built target rdForceField | |
| [ 64%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitDistGeomHelpers.2019.03.1dev1.dylib -install_name @rpath/libRDKitDistGeomHelpers.1.dylib CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDistGeometry.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitDistGeomHelpers.1.dylib ../../../lib/libRDKitDistGeomHelpers.dylib | |
| [ 64%] Built target DistGeomHelpers | |
| [ 64%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/DistGeom/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDistGeometry.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 64%] Built target DistGeom | |
| [ 64%] Linking CXX shared library ../../../lib/libRDKitDepictor.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib -install_name @rpath/libRDKitDepictor.1.dylib CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.1.dylib ../../../lib/libRDKitDepictor.dylib | |
| [ 64%] Built target Depictor | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= | |
| [ 65%] Linking CXX shared module ../../../rdkit/Chem/rdCoordGen.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdCoordGen.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdCoordGen.so CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 65%] Built target rdCoordGen | |
| Scanning dependencies of target FileParsers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build | |
| [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/Mol2FileParser.cpp | |
| [ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolFileParser.cpp | |
| [ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolSGroupParsing.cpp | |
| [ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o | |
| [ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolFileStereochem.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolSGroupWriting.cpp | |
| [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MolFileWriter.cpp | |
| [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o | |
| [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SDMolSupplier.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp | |
| [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SDWriter.cpp | |
| [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp | |
| [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SmilesWriter.cpp | |
| [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/TDTMolSupplier.cpp | |
| [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/TDTWriter.cpp | |
| [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/TplFileParser.cpp | |
| [ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/TplFileWriter.cpp | |
| [ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/PDBParser.cpp | |
| [ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/PDBWriter.cpp | |
| [ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/PDBSupplier.cpp | |
| [ 69%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/MaeMolSupplier.cpp | |
| [ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/ProximityBonds.cpp | |
| [ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SequenceParsers.cpp | |
| [ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SequenceWriters.cpp | |
| [ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers/SVGParser.cpp | |
| [ 71%] Linking CXX shared library ../../../lib/libRDKitFileParsers.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib -install_name @rpath/libRDKitFileParsers.1.dylib CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.1.dylib ../../../lib/libRDKitFileParsers.dylib | |
| [ 71%] Built target FileParsers | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target MMPA | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build | |
| [ 71%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/MMPA.cpp | |
| Scanning dependencies of target rdMolCatalog | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build | |
| Scanning dependencies of target FMCS | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build | |
| Scanning dependencies of target rdDepictor | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build | |
| Scanning dependencies of target rdDistGeom | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build | |
| Scanning dependencies of target rdSubstructLibrary | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build | |
| [ 72%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp | |
| Scanning dependencies of target rdfiltercatalog | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build | |
| [ 72%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DIN_COORDGEN -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp | |
| [ 72%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o | |
| [ 72%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/FMCS.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp | |
| [ 72%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o | |
| [ 73%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/Seed.cpp | |
| [ 73%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp | |
| [ 73%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp | |
| Scanning dependencies of target rdfragcatalog | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build | |
| [ 73%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp | |
| Scanning dependencies of target rdmolfiles | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build | |
| [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/rdmolfiles.cpp | |
| Scanning dependencies of target Descriptors | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build | |
| [ 73%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Crippen.cpp | |
| [ 73%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp | |
| [ 74%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp | |
| [ 74%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp | |
| [ 74%] Linking CXX shared library ../../../lib/libRDKitMMPA.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMMPA.2019.03.1dev1.dylib -install_name @rpath/libRDKitMMPA.1.dylib CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.2019.03.1dev1.dylib ../../../lib/libRDKitMMPA.1.dylib ../../../lib/libRDKitMMPA.dylib | |
| [ 74%] Built target MMPA | |
| [ 74%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/SubstructMatchCustom.cpp | |
| [ 75%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp | |
| [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/MolDescriptors.cpp | |
| [ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp | |
| [ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Depictor/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 76%] Built target rdDepictor | |
| [ 76%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/MaeMolSupplier.cpp | |
| [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/MolSurf.cpp | |
| [ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolCatalog/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolCatalog.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 76%] Built target rdMolCatalog | |
| [ 77%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp | |
| [ 77%] Linking CXX shared library ../../../lib/libRDKitFMCS.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitFMCS.2019.03.1dev1.dylib -install_name @rpath/libRDKitFMCS.1.dylib CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.2019.03.1dev1.dylib ../../../lib/libRDKitFMCS.1.dylib ../../../lib/libRDKitFMCS.dylib | |
| [ 77%] Built target FMCS | |
| [ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/SDMolSupplier.cpp | |
| [ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitDistGeomHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitDistGeometry.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Lipinski.cpp | |
| [ 77%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp | |
| [ 77%] Built target rdDistGeom | |
| [ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/TDTMolSupplier.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= | |
| [ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/SmilesMolSupplier.cpp | |
| [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdMMPA | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build | |
| [ 77%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp | |
| [ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitSubstructLibrary.2019.03.1dev1.dylib ../../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| Scanning dependencies of target RGroupDecomposition | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build | |
| [ 77%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp | |
| [ 77%] Built target rdSubstructLibrary | |
| [ 78%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/SmilesWriter.cpp | |
| [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/MQN.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= | |
| [ 78%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/SDWriter.cpp | |
| [ 78%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/TDTWriter.cpp | |
| [ 79%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Property.cpp | |
| Scanning dependencies of target rdFMCS | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build | |
| [ 80%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp | |
| [ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FragCatalog/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitFragCatalog.2019.03.1dev1.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/AUTOCORR2D.cpp | |
| [ 80%] Built target rdfragcatalog | |
| [ 80%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/PDBWriter.cpp | |
| [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp | |
| [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp | |
| [ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/USRDescriptor.cpp | |
| [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MMPA/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMMPA.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/EEM.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/EEM.cpp | |
| [ 81%] Built target rdMMPA | |
| [ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/PBF.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/PBF.cpp | |
| [ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/PMI.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/PMI.cpp | |
| [ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/AUTOCORR3D.cpp | |
| [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FilterCatalog/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 81%] Built target rdfiltercatalog | |
| [ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/RDF.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/RDF.cpp | |
| [ 82%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitRGroupDecomposition.2019.03.1dev1.dylib -install_name @rpath/libRDKitRGroupDecomposition.1.dylib CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitFMCS.2019.03.1dev1.dylib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib | |
| [ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/MORSE.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/MORSE.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.2019.03.1dev1.dylib ../../../lib/libRDKitRGroupDecomposition.1.dylib ../../../lib/libRDKitRGroupDecomposition.dylib | |
| [ 82%] Built target RGroupDecomposition | |
| [ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/GETAWAY.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= | |
| [ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Descriptors.dir/WHIM.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/WHIM.cpp | |
| [ 83%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 83%] Built target rdmolfiles | |
| [ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/FMCS/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitFMCS.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| Scanning dependencies of target rdRGroupDecomposition | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build | |
| [ 83%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp | |
| [ 83%] Built target rdFMCS | |
| [ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/RGroupDecomposition/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitRGroupDecomposition.2019.03.1dev1.dylib ../../../../lib/libRDKitFMCS.2019.03.1dev1.dylib ../../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 83%] Built target rdRGroupDecomposition | |
| [ 84%] Linking CXX shared library ../../../lib/libRDKitDescriptors.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib -install_name @rpath/libRDKitDescriptors.1.dylib CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors.dir/EEM.cpp.o CMakeFiles/Descriptors.dir/PBF.cpp.o CMakeFiles/Descriptors.dir/PMI.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors.dir/RDF.cpp.o CMakeFiles/Descriptors.dir/MORSE.cpp.o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o CMakeFiles/Descriptors.dir/WHIM.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../lib/libRDKitDescriptors.1.dylib ../../../lib/libRDKitDescriptors.dylib | |
| [ 84%] Built target Descriptors | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdMolDescriptors | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build | |
| Scanning dependencies of target rdMolAlign | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build | |
| Scanning dependencies of target MolHash | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build | |
| [ 84%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp | |
| [ 84%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp | |
| [ 84%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash/MolHash.cpp | |
| [ 84%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash/HashToString.cpp | |
| Scanning dependencies of target StructChecker | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build | |
| [ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/StructChecker.cpp | |
| [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/StructCheckerOptions.cpp | |
| [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/StructureFlags.cpp | |
| [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o | |
| [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Utilites.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Pattern.cpp | |
| [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Stereo.cpp | |
| [ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp | |
| Scanning dependencies of target ChemReactions | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build | |
| [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Reaction.cpp | |
| [ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/StripSmallFragments.cpp | |
| [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/MDLParser.cpp | |
| [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/DaylightParser.cpp | |
| [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/ReactionPickler.cpp | |
| [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/ReactionWriter.cpp | |
| [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/ReactionDepict.cpp | |
| [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp | |
| [ 87%] Linking CXX shared library ../../../lib/libRDKitMolHash.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolHash.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolHash.1.dylib CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.2019.03.1dev1.dylib ../../../lib/libRDKitMolHash.1.dylib ../../../lib/libRDKitMolHash.dylib | |
| [ 87%] Built target MolHash | |
| [ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/ReCharge.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= | |
| [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/ReactionUtils.cpp | |
| Scanning dependencies of target rdMolHash | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build | |
| [ 88%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp | |
| [ 88%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Tautomer.cpp | |
| [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/MoleculeParser.cpp | |
| [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/ReactionRunner.cpp | |
| [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/PreprocessRxn.cpp | |
| [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/SanitizeRxn.cpp | |
| [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp | |
| [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp | |
| [ 89%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolAlign/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 89%] Built target rdMolAlign | |
| [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp | |
| [ 90%] Linking CXX shared library ../../../lib/libRDKitStructChecker.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitStructChecker.2019.03.1dev1.dylib -install_name @rpath/libRDKitStructChecker.1.dylib CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.2019.03.1dev1.dylib ../../../lib/libRDKitStructChecker.1.dylib ../../../lib/libRDKitStructChecker.dylib | |
| [ 90%] Built target StructChecker | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= | |
| [ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolHash/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolHash.2019.03.1dev1.dylib ../../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 90%] Built target rdMolHash | |
| Scanning dependencies of target rdStructChecker | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build | |
| [ 90%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Wrap/structchecker.cpp | |
| [ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Descriptors/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 90%] Built target rdMolDescriptors | |
| [ 90%] Linking CXX shared library ../../../lib/libRDKitChemReactions.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitChemReactions.2019.03.1dev1.dylib -install_name @rpath/libRDKitChemReactions.1.dylib CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.2019.03.1dev1.dylib ../../../lib/libRDKitChemReactions.1.dylib ../../../lib/libRDKitChemReactions.dylib | |
| [ 90%] Built target ChemReactions | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdChemReactions | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build | |
| [ 90%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp | |
| [ 90%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp | |
| Scanning dependencies of target MolDraw2D | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build | |
| [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/MolDraw2D.cpp | |
| [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp | |
| [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp | |
| [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp | |
| Scanning dependencies of target MolStandardize | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build | |
| [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/MolStandardize.cpp | |
| [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Metal.cpp | |
| [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Normalize.cpp | |
| [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Validate.cpp | |
| [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Charge.cpp | |
| [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/StructChecker/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitStructChecker.2019.03.1dev1.dylib ../../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Tautomer.cpp | |
| [ 93%] Built target rdStructChecker | |
| [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Fragment.cpp | |
| [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp | |
| [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp | |
| [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp | |
| [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp | |
| [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp | |
| [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp | |
| [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp | |
| [ 96%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 | |
| [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolDraw2D.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolDraw2D.1.dylib CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitChemReactions.2019.03.1dev1.dylib ../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib | |
| [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.2019.03.1dev1.dylib ../../../lib/libRDKitMolDraw2D.1.dylib ../../../lib/libRDKitMolDraw2D.dylib | |
| [ 96%] Built target MolDraw2D | |
| [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= | |
| [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp | |
| [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp | |
| Scanning dependencies of target rdMolDraw2D | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build | |
| Scanning dependencies of target rdmolops | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build | |
| [ 97%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp | |
| [ 97%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/rdmolops.cpp | |
| [ 97%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap/MolOps.cpp | |
| [ 97%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitMolStandardize.2019.03.1dev1.dylib -install_name @rpath/libRDKitMolStandardize.1.dylib CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitChemReactions.2019.03.1dev1.dylib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib | |
| [ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/ChemReactions/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitChemReactions.2019.03.1dev1.dylib ../../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.2019.03.1dev1.dylib ../../../lib/libRDKitMolStandardize.1.dylib ../../../lib/libRDKitMolStandardize.dylib | |
| [ 98%] Built target MolStandardize | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend | |
| cd /tmp/rdkit-20190301-1994-10cstk && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap /tmp/rdkit-20190301-1994-10cstk /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= | |
| [ 98%] Built target rdChemReactions | |
| Scanning dependencies of target rdMolStandardize | |
| /Library/Developer/CommandLineTools/usr/bin/make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build | |
| [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o | |
| [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap/Validate.cpp | |
| [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap/Charge.cpp | |
| [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o | |
| [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp | |
| [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -I/tmp/rdkit-20190301-1994-10cstk/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap/Metal.cpp | |
| [100%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolDraw2D/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolDraw2D.2019.03.1dev1.dylib ../../../../lib/libRDKitChemReactions.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib | |
| [100%] Built target rdMolDraw2D | |
| [100%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitMolDraw2D.2019.03.1dev1.dylib ../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitChemReactions.2019.03.1dev1.dylib ../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib | |
| [100%] Built target rdmolops | |
| [100%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so | |
| cd /tmp/rdkit-20190301-1994-10cstk/Code/GraphMol/MolStandardize/Wrap && /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -bundle -Wl,-headerpad_max_install_names -bundle -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../../lib/libRDKitMolStandardize.2019.03.1dev1.dylib ../../../../lib/libRDKitRDBoost.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitChemReactions.2019.03.1dev1.dylib ../../../../lib/libRDKitFilterCatalog.2019.03.1dev1.dylib ../../../../lib/libRDKitCatalogs.2019.03.1dev1.dylib ../../../../lib/libRDKitDescriptors.2019.03.1dev1.dylib ../../../../lib/libRDKitPartialCharges.2019.03.1dev1.dylib ../../../../lib/libRDKitFingerprints.2019.03.1dev1.dylib ../../../../lib/libRDKitSubgraphs.2019.03.1dev1.dylib ../../../../lib/libRDKitFileParsers.2019.03.1dev1.dylib ../../../../lib/libRDKitDepictor.2019.03.1dev1.dylib ../../../../lib/libRDKitMolAlign.2019.03.1dev1.dylib ../../../../lib/libRDKitMolTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib ../../../../lib/libRDKitAlignment.2019.03.1dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2019.03.1dev1.dylib ../../../../lib/libRDKitForceField.2019.03.1dev1.dylib ../../../../lib/libRDKitOptimizer.2019.03.1dev1.dylib ../../../../lib/libRDKitTrajectory.2019.03.1dev1.dylib ../../../../lib/libRDKitcoordgen.2019.03.1dev1.dylib ../../../../lib/libRDKitmaeparser.2019.03.1dev1.dylib ../../../../lib/libRDKitChemTransforms.2019.03.1dev1.dylib ../../../../lib/libRDKitSmilesParse.2019.03.1dev1.dylib ../../../../lib/libRDKitSubstructMatch.2019.03.1dev1.dylib ../../../../lib/libRDKitGraphMol.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2019.03.1dev1.dylib ../../../../lib/libRDKitDataStructs.2019.03.1dev1.dylib ../../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib | |
| [100%] Built target rdMolStandardize | |
| /usr/local/Cellar/cmake/3.13.4/bin/cmake -E cmake_progress_start /tmp/rdkit-20190301-1994-10cstk/CMakeFiles 0 |
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| clang called with: -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/hc.c | |
| superenv removed: -I/usr/local/include | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang -pipe -w -Os -march=core2 -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/hc.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/hcdriver.c | |
| superenv removed: -I/usr/local/include | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang -pipe -w -Os -march=core2 -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /tmp/rdkit-20190301-1994-10cstk/Code/ML/Cluster/Murtagh/hcdriver.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang called with: -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../../lib/libRDKithc.2019.03.1dev1.dylib -install_name @rpath/libRDKithc.1.dylib CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=core2 -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../../lib/libRDKithc.2019.03.1dev1.dylib -install_name @rpath/libRDKithc.1.dylib CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/Invariant.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/Invariant.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/RDLog.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/RDLog.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/types.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/types.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/utils.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/utils.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/LocaleSwitcher.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/LocaleSwitcher.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/versions.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/versions.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/Dict.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDGeneral/Dict.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/MaeBlock.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/MaeBlock.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/Buffer.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/Buffer.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/MaeParser.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/MaeParser.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/Reader.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dmaeparser_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/maeparser/Reader.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDGeneral.1.dylib CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDGeneral.1.dylib CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/DistPicker.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/DistPicker.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/MaxMinPicker.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/MaxMinPicker.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/HierarchicalClusterPicker.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/SimDivPickers/HierarchicalClusterPicker.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/BitVect.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/BitVect.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/SparseBitVect.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/SparseBitVect.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Utils.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/Utils.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/ExplicitBitVect.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/ExplicitBitVect.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/base64.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/base64.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/Catalog.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/Catalog.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/RDBoost/Wrap.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/BitOps.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/BitOps.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CatalogParams.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CatalogParams.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/DiscreteDistMat.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/DiscreteDistMat.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CatalogEntry.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/Catalogs/CatalogEntry.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/DiscreteValueVect.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/DiscreteValueVect.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/FPBReader.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/FPBReader.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitSimDivPickers.2019.03.1dev1.dylib -install_name @rpath/libRDKitSimDivPickers.1.dylib CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKithc.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitSimDivPickers.2019.03.1dev1.dylib -install_name @rpath/libRDKitSimDivPickers.1.dylib CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKithc.2019.03.1dev1.dylib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib -install_name @rpath/libRDKitEigenSolvers.1.dylib CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../../lib/libRDKitEigenSolvers.2019.03.1dev1.dylib -install_name @rpath/libRDKitEigenSolvers.1.dylib CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/MultiFPBReader.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/Code/DataStructs/MultiFPBReader.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitCatalogs.2019.03.1dev1.dylib -install_name @rpath/libRDKitCatalogs.1.dylib CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitCatalogs.2019.03.1dev1.dylib -install_name @rpath/libRDKitCatalogs.1.dylib CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDBoost.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDBoost.1.dylib CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitRDBoost.2019.03.1dev1.dylib -install_name @rpath/libRDKitRDBoost.1.dylib CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-rpath,/tmp/rdkit-20190301-1994-10cstk/lib ../../lib/libRDKitRDGeneral.2019.03.1dev1.dylib /usr/local/lib/libboost_python37-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitmaeparser.2019.03.1dev1.dylib -install_name @rpath/libRDKitmaeparser.1.dylib CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2019.3.1 -o ../../lib/libRDKitmaeparser.2019.03.1dev1.dylib -install_name @rpath/libRDKitmaeparser.1.dylib CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include -L/usr/local/opt/icu4c/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/opt/openblas/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmentBuilder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenFragmentBuilder.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmentBuilder.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenFragmentBuilder.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| clang++ called with: -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmenter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenFragmenter.cpp | |
| superenv removed: -I/usr/local/include -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=core2 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -I/usr/local/opt/openblas/include | |
| superenv executed: clang++ -pipe -w -Os -march=core2 -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dcoordgen_EXPORTS -I/tmp/rdkit-20190301-1994-10cstk/External/catch/catch/single_include -I/tmp/rdkit-20190301-1994-10cstk/External -I/tmp/rdkit-20190301-1994-10cstk/External/CoordGen -I/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/tmp/rdkit-20190301-1994-10cstk/Code -isystem /usr/local/include/eigen3 -std=c++11 -stdlib=libc++ -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -mpopcnt -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -stdlib=libc++ -DNDEBUG -fPIC -o CMakeFiles/coordgen.dir/coordgen/CoordgenFragmenter.cpp.o -c /tmp/rdkit-20190301-1994-10cstk/External/CoordGen/coordgen/CoordgenFragmenter.cpp -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk - |
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