Last active
April 4, 2022 17:20
-
-
Save thejohnhoffer/88fc99b1a44c47c70ef02b6add6ee5aa to your computer and use it in GitHub Desktop.
Custom auto-hyperlink tables in Minerva Story
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <!DOCTYPE html> | |
| <html lang="en-US" class="h-100"> | |
| <head> | |
| <meta charset='utf-8'> | |
| <meta http-equiv="X-UA-Compatible" content="IE=edge"> | |
| <meta name="viewport" content="width=device-width, initial-scale=1"> | |
| </head> | |
| <body> | |
| <div id="minerva-browser" style="position: absolute; top: 0; left: 0; height: 100%; width: 100%;"> </div> | |
| <script defer src="https://use.fontawesome.com/releases/v5.2.0/js/all.js" integrity="sha384-4oV5EgaV02iISL2ban6c/RmotsABqE4yZxZLcYMAdG7FAPsyHYAPpywE9PJo+Khy" crossorigin="anonymous"></script> | |
| <script src="https://api.html5media.info/1.2.2/html5media.min.js"></script> | |
| <script src="https://cdn.jsdelivr.net/npm/amazon-cognito-identity-js@4.5.0/dist/amazon-cognito-identity.min.js"></script> | |
| <script src="https://cdn.jsdelivr.net/npm/minerva-browser@3.2.4/build/bundle.js"></script> | |
| <script> | |
| const speech_bucket = ""; | |
| const authenticate = function(username, pass) { | |
| const authenticateUser = function(cognitoUser, authenticationDetails) { | |
| return new Promise(function(resolve, reject) { | |
| cognitoUser.authenticateUser(authenticationDetails, { | |
| onSuccess: result => resolve(result), | |
| onFailure: err => reject(err), | |
| mfaRequired: codeDeliveryDetails => reject(codeDeliveryDetails), | |
| newPasswordRequired: (fields, required) => reject({fields, required}) | |
| }); | |
| }); | |
| }; | |
| return pass.then(function(password) { | |
| const minervaPoolId = 'us-east-1_d3Wusx6qp'; | |
| const minervaClientId = 'cvuuuuogh6nmqm8491iiu1lh5'; | |
| const minervaPool = new AmazonCognitoIdentity.CognitoUserPool({ | |
| UserPoolId : minervaPoolId, | |
| ClientId : minervaClientId | |
| }); | |
| const cognitoUser = new AmazonCognitoIdentity.CognitoUser({ | |
| Username: username, | |
| Pool: minervaPool | |
| }); | |
| const authenticationDetails = new AmazonCognitoIdentity.AuthenticationDetails({ | |
| Username: username, | |
| Password: password | |
| }); | |
| return authenticateUser(cognitoUser, authenticationDetails) | |
| .then(response => response.getIdToken().getJwtToken()); | |
| }); | |
| } | |
| const markerData = [ | |
| { | |
| String: "SMA", | |
| Alias: "ACTA2", | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ACTA2&keywords=smooth,muscle,actin" | |
| }, | |
| { | |
| String: "CD3e", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD3E&keywords=cd3" | |
| }, | |
| { | |
| String: "E-Cadherin", | |
| Alias: "cadherin, CDH1", | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CDH1" | |
| }, | |
| { | |
| String: "CD31", | |
| Alias: "PECAM1", | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=PECAM1&keywords=cd31" | |
| }, | |
| { | |
| String: "ARL13B", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ARL13B&keywords=ARL13B" | |
| }, | |
| { | |
| String: "ASMA", | |
| Alias: "A-SMA, a-SMA, alpha-SMA, α-SMA", | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ACTA2&keywords=alpha,smooth,muscle,actin" | |
| }, | |
| { | |
| String: "BANF1", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=BANF1&keywords=BANF1" | |
| }, | |
| { | |
| String: "CD11B", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ITGAM&keywords=CD11B" | |
| }, | |
| { | |
| String: "CD14", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD14&keywords=CD14" | |
| }, | |
| { | |
| String: "CD163", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD163&keywords=CD163" | |
| }, | |
| { | |
| String: "CD19", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD19&keywords=CD19" | |
| }, | |
| { | |
| String: "CD20", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=MS4A1&keywords=CD20" | |
| }, | |
| { | |
| String: "CD21", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CR2&keywords=CD21" | |
| }, | |
| { | |
| String: "CD3D", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD3D&keywords=CD3D" | |
| }, | |
| { | |
| String: "CD4", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD4&keywords=CD4" | |
| }, | |
| { | |
| String: "CD45", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=PTPRC&keywords=CD45" | |
| }, | |
| { | |
| String: "CD45RB", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=PTPRC&keywords=CD45RB" | |
| }, | |
| { | |
| String: "CD68", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD68&keywords=CD68" | |
| }, | |
| { | |
| String: "CD8A", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD8A&keywords=CD8A" | |
| }, | |
| { | |
| String: "FOXP3", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=FOXP3&keywords=FOXP3" | |
| }, | |
| { | |
| String: "GFAP", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=GFAP&keywords=GFAP" | |
| }, | |
| { | |
| String: "GTUBULIN", | |
| Alias: "gamma-tubulin", | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=TUBG1&keywords=gamma,tubulin" | |
| }, | |
| { | |
| String: "IBA1", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=AIF1&keywords=IBA1" | |
| }, | |
| { | |
| String: "KERATIN", | |
| Alias: "pan-cytokeratin, pan-keratin", | |
| Link: "https://www.genecards.org/Search/Keyword?queryString=KERATIN" | |
| }, | |
| { | |
| String: "KI67", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=MKI67&keywords=KI67" | |
| }, | |
| { | |
| String: "LAG3", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=LAG3&keywords=LAG3" | |
| }, | |
| { | |
| String: "LAMINAC", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=LMNA&keywords=LAMIN,AC" | |
| }, | |
| { | |
| String: "LAMINB", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=LMNB1&keywords=LAMINB" | |
| }, | |
| { | |
| String: "PD-1", | |
| Alias: "PD1", | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=PDCD1&keywords=PD-1" | |
| }, | |
| { | |
| String: "PD-L1", | |
| Alias: "PDL1", | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD274&keywords=PD-L1" | |
| }, | |
| { | |
| String: "CD19", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD19&keywords=CD19" | |
| }, | |
| { | |
| String: "CD14", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD14&keywords=CD11c" | |
| }, | |
| { | |
| String: "CD56", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=NCAM1&keywords=CD56" | |
| }, | |
| { | |
| String: "CD34", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD34&keywords=CD34" | |
| }, | |
| { | |
| String: "CD44", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD44&keywords=CD34" | |
| }, | |
| { | |
| String: "CD14", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD14&keywords=CD14" | |
| }, | |
| { | |
| String: "CD33", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD33&keywords=CD33" | |
| }, | |
| { | |
| String: "CD41", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ITGA2B&keywords=CD41" | |
| }, | |
| { | |
| String: "CD61", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ITGB3&keywords=CD61" | |
| }, | |
| { | |
| String: "CD62", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=SELP&keywords=CD62" | |
| }, | |
| { | |
| String: "CD146", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=MCAM&keywords=CD146" | |
| }, | |
| { | |
| String: "CD1d", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD1D&keywords=CD1d" | |
| }, | |
| { | |
| String: "CD2", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD2&keywords=CD2" | |
| }, | |
| { | |
| String: "CD5", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD5&keywords=cd5" | |
| }, | |
| { | |
| String: "CD7", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD7&keywords=CD7" | |
| }, | |
| { | |
| String: "CD9", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD9&keywords=CD9" | |
| }, | |
| { | |
| String: "CD10", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=MME&keywords=CD10" | |
| }, | |
| { | |
| String: "CD11A", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ITGAL&keywords=CD11A" | |
| }, | |
| { | |
| String: "CD70", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD70&keywords=CD70" | |
| }, | |
| { | |
| String: "CD74", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=CD74&keywords=CD74" | |
| }, | |
| { | |
| String: "CD103", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ITGAE&keywords=CD103" | |
| }, | |
| { | |
| String: "CD133", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=PROM1&keywords=CD133" | |
| }, | |
| { | |
| String: "CD168", | |
| Alias: null, | |
| Link: "https://www.genecards.org/cgi-bin/carddisp.pl?gene=HMMR&keywords=CD168" | |
| } | |
| ]; | |
| const cellTypeData = [ | |
| { | |
| String: "Natural Killer Cells", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/c%C3%A9lulas/natural-killer-cells" | |
| }, | |
| { | |
| String: "B Cells", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/cells/b-cells" | |
| }, | |
| { | |
| String: "Basophil", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/c%C3%A9lulas/basophils" | |
| }, | |
| { | |
| String: "Helper T cell", | |
| Alias: "CD4+ T Cell", | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/células/cd4-t-cells" | |
| }, | |
| { | |
| String: "Cytotoxic T Cell", | |
| Alias: "CD8+ T Cell", | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/c%C3%A9lulas/cd8-t-cells" | |
| }, | |
| { | |
| String: "Dendritic Cell", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/cells/dendritic-cells" | |
| }, | |
| { | |
| String: "Eosinophils", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/c%C3%A9lulas/eosinophils" | |
| }, | |
| { | |
| String: "Macrophage", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/c%C3%A9lulas/macrophages" | |
| }, | |
| { | |
| String: "Mast Cell", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/c%C3%A9lulas/mast-cells" | |
| }, | |
| { | |
| String: "Neutrophil", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/cells/neutrophils" | |
| }, | |
| { | |
| String: "Regulatory T Cell", | |
| Alias: "Treg", | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/células/regulatory-t-cells-tregs" | |
| }, | |
| { | |
| String: "T follicular helper cell", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/cells/t-follicular-helper-cells" | |
| }, | |
| { | |
| String: "bone marrow", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/%C3%B3rganos-y-tejidos/bone-marrow" | |
| }, | |
| { | |
| String: "lymph node", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/organs-and-tissues/lymph-node" | |
| }, | |
| { | |
| String: "complement system", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/sistemas-y-procesos/complement-system" | |
| }, | |
| { | |
| String: "phagocytosis", | |
| Alias: null, | |
| Link: "https://www.immunology.org/public-information/bitesized-immunology/systems-and-processes/phagocytosis" | |
| } | |
| ]; | |
| window.viewer = MinervaStory.default.build_page({ | |
| hideWelcome: true, | |
| markerData: markerData, | |
| cellTypeData: cellTypeData, | |
| authenticate: authenticate, | |
| speech_bucket: speech_bucket, | |
| exhibit: "exhibit.json", | |
| id: "minerva-browser", | |
| embedded: true | |
| }); | |
| </script> | |
| </body> | |
| </html> |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment